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Conserved domains on  [gi|1273810820|gb|ATQ39492|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Betiscoides sp. B13_ko_11]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-247 3.34e-100

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 302.83  E-value: 3.34e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  81 AGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471


                  ....*..
gi 1273810820 241 ISNLSIS 247
Cdd:MTH00165  472 LSLMSLS 478
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-247 3.34e-100

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 302.83  E-value: 3.34e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  81 AGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471


                  ....*..
gi 1273810820 241 ISNLSIS 247
Cdd:MTH00165  472 LSLMSLS 478
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.04e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.08  E-value: 6.04e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIF-GFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFALSpVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 159 AYSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPFMVSLPYYLKFLTMI 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810820 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 1.06e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.65  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 172 DNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPV-----------PFMVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810820 241 I 241
Cdd:TIGR01974 517 L 517
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 13-153 3.05e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 3.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  13 NFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGPMIHNLK 89
Cdd:pfam00361 148 QILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRV 227

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810820  90 DSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFIS 153
Cdd:pfam00361 228 HTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-247 3.34e-100

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 302.83  E-value: 3.34e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00165  232 RFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLC 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  81 AGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00165  312 AGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSY 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 161 SFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:MTH00165  392 SFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYE 471


                  ....*..
gi 1273810820 241 ISNLSIS 247
Cdd:MTH00165  472 LSLMSLS 478
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-238 3.15e-68

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 219.71  E-value: 3.15e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIF-GFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00151  228 RFFPFLSSSsGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFL 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00151  308 CAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTAL 387

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLG 238
Cdd:MTH00151  388 YSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLS 466
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-244 3.11e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 217.21  E-value: 3.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNF-LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00209  227 RFFPSLFSSPFFSMsLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFI 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00209  307 CAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAA 386

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00209  387 YSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466


                  ....*
gi 1273810820 240 LISNL 244
Cdd:MTH00209  467 MVLKK 471
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-247 9.11e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 216.17  E-value: 9.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFG-FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00207  231 RFYPFLSSTYwFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFV 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00207  311 CAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAA 390

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00207  391 YSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470


                  ....*...
gi 1273810820 240 LISNLSIS 247
Cdd:MTH00207  471 LFTTPNIT 478
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-247 2.74e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 189.01  E-value: 2.74e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPM-LDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00211  256 RLSPLfQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFM 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00211  336 CSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAA 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMV-SLPYYLKFLTMIVVILGSYLG 238
Cdd:MTH00211  416 YSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLG 495


                  ....*....
gi 1273810820 239 YLISNLSIS 247
Cdd:MTH00211  496 LELVNLTHK 504
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 16-245 1.43e-53

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 181.90  E-value: 1.43e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  16 LLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDSQDIR 95
Cdd:MTH00004  277 LCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIR 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  96 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNF 175
Cdd:MTH00004  357 KMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT 436

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1273810820 176 YSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPV-PFMVSLPYYLKFLTMIVVILGSYLGYLISNLS 245
Cdd:MTH00004  437 PPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGILLALELSNMT 507
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-245 1.50e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 171.19  E-value: 1.50e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLL-VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00108  262 RFHPLMENNKTIQTLTLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00108  342 CSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFP--VPFMvSLPYYLKFLTMIVVILGSYL 237
Cdd:MTH00108  422 YSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIPQM-TMPLYLKLTALAVTILGFIL 500


                  ....*...
gi 1273810820 238 GYLISNLS 245
Cdd:MTH00108  501 ALELNLLT 508
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 16-245 4.55e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 167.01  E-value: 4.55e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  16 LLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDSQDIR 95
Cdd:MTH00066  275 LCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  96 FMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNF 175
Cdd:MTH00066  355 KMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRS 434

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1273810820 176 YSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPV-PFMVSLPYYLKFLTMIVVILGSYLGYLISNLS 245
Cdd:MTH00066  435 LPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGLLIALDLAKIT 505
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-243 7.20e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 167.07  E-value: 7.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGN-FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00208  288 RTSPLISNSPWFLsLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVsLPYYLKFLTMIVVILGSYLGY 239
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLPPLT-LPLILKSLPLIVTIIGAAFSF 526


                  ....
gi 1273810820 240 LISN 243
Cdd:MTH00208  527 SFLL 530
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-169 6.15e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 158.84  E-value: 6.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDifgfGNFLLLVGCM------TMFMA--GLGANfefDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHAL 72
Cdd:MTH00137  267 RLSPLME----NNQTALTTCLclgaltTLFTAtcALTQN---DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAF 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  73 FKALLFMCAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFI 152
Cdd:MTH00137  340 FKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLI 419

                         170
                  ....*....|....*...
gi 1273810820 153 STGLTAAYSFRL-FYYSM 169
Cdd:MTH00137  420 ATSFTAVYSLRVvFFVSM 437
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-241 6.04e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.08  E-value: 6.04e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIF-GFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:COG1009   263 RLSPLFALSpVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFL 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE-LVCLSWINCLIFFLYFISTGLTA 158
Cdd:COG1009   343 GAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTA 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 159 AYSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWI---------IFPVPFMVSLPYYLKFLTMI 229
Cdd:COG1009   422 FYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLL 501

                         250
                  ....*....|..
gi 1273810820 230 VVILGSYLGYLI 241
Cdd:COG1009   502 LSLLGIALGYLL 513
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 12-241 1.06e-38

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 141.65  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDS 91
Cdd:TIGR01974 277 LYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:TIGR01974 357 QDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG 436

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 172 DNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPV-----------PFMVSLPYYLKFLTMIVVILGSYLGYL 240
Cdd:TIGR01974 437 KERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIVPLFEFLkgvlptsaepaLEHHHVPALEIWSPTAVAILGILLAYL 516


                  .
gi 1273810820 241 I 241
Cdd:TIGR01974 517 L 517
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 12-241 1.44e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 138.75  E-value: 1.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDS 91
Cdd:PRK06590  281 LLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHE 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:PRK06590  361 QDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE-AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHG 439

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 172 DNNfYSSYSFDDSGYFISFGMIGLLIIAVFGG-----SLLSWIIFP-----VPFMVSLPYYLKFLTMIVVILGSYLGYLI 241
Cdd:PRK06590  440 KEK-EKIHHPHESPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTtelahGEAEHHLPVWVALLPLVVALAGIALAWLL 518
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 17-243 3.80e-36

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 134.75  E-value: 3.80e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNLKDSQDIRF 96
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRK 359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  97 MGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSGDNNFY 176
Cdd:MTH00210  360 MGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSK 439

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810820 177 SS--YSFDDSGYFISFGMIGLLIIAVFGGSL-----LSWIIFPVpfmvsLPYYLKFLTMIVVILGSYLGYLISN 243
Cdd:MTH00210  440 KEvfIGVHESSWNITFPLLLLAFGSIFVGYLgkevvLSNVIPPI-----VPNSIKMIPLLFSLLGALLAFVIYN 508
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-174 6.73e-35

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 131.35  E-value: 6.73e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLL-LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:MTH00020  262 RSSPLFEQAPLALIIVtIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFL 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAA 159
Cdd:MTH00020  342 SAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAF 421

                         170
                  ....*....|....*
gi 1273810820 160 YSFRLFYYSMSGDNN 174
Cdd:MTH00020  422 YSIRLIYLTFLSNTN 436
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-172 1.26e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 125.14  E-value: 1.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGF-GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK07376  279 RMYPVFEQFPAvMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFL 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  80 CAGPMIHNLKD--------SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSwiNCLIFFLYF 151
Cdd:PRK07376  359 GSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGF 436

                         170       180
                  ....*....|....*....|.
gi 1273810820 152 ISTGLTAAYSFRLFYYSMSGD 172
Cdd:PRK07376  437 LTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 13-194 1.21e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 108.06  E-value: 1.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  13 NFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNL---- 88
Cdd:CHL00025  292 NLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepiv 371

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  89 ----KDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILElvcLSWINCLIF-FLYFISTGLTAAYSFR 163
Cdd:CHL00025  372 gyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILN---DSWLYSPIFaIIAWSTAGLTAFYMFR 448

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1273810820 164 LFYYSMSGDNNFYS-SYSFDDSGYFISFGMIG 194
Cdd:CHL00025  449 IYLLTFEGHLRVHFqNYSGKKNSSFYSISLWG 480
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 13-153 3.05e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 3.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  13 NFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGPMIHNLK 89
Cdd:pfam00361 148 QILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiQAAIFHLLTHGLFSAGLFLCAGSVIYRRV 227

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810820  90 DSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFIS 153
Cdd:pfam00361 228 HTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 17-136 6.53e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 96.95  E-value: 6.53e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM-GYSKLAFFHLLTHALFKALLFMCAGPMIHNLK-DSQDI 94
Cdd:MTH00032  294 IFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDM 373

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1273810820  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILEL 136
Cdd:MTH00032  374 RKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 11-167 5.16e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 93.67  E-value: 5.16e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGPMIHN 87
Cdd:COG0651   271 LGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERA 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIFFLYFISTGLTAAYSFRLFYY 167
Cdd:COG0651   351 TG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-233 7.95e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 90.75  E-value: 7.95e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00095  216 NFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQ 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  81 AGPMIHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGLTAAY 160
Cdd:MTH00095  296 VGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGY 375

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810820 161 SFRLFyysMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFggsLLSWIIFPVPFMVSLPYYLKFLTMIVVIL 233
Cdd:MTH00095  376 SYRLW---KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVF---FLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
PRK12650 PRK12650
DUF4040 family protein;
1-164 1.59e-18

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 84.32  E-value: 1.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPML-DIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKAL 76
Cdd:PRK12650  260 RFSPVFhDVAVWNWLLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPfalTAAVVHTLAHALFKSS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  77 LFMCAGPMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTGL 156
Cdd:PRK12650  340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAAL 418

                         170
                  ....*....|..
gi 1273810820 157 TA----AYSFRL 164
Cdd:PRK12650  419 GAvftfAYSARL 430
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-167 6.68e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 82.23  E-value: 6.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  10 GFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIH 86
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  87 NLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK-DLILELVCLSWINCLIFFLyfISTGLTAAYSFRLF 165
Cdd:PRK08375  349 TYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSLLALLYFLRIW 425


                  ..
gi 1273810820 166 YY 167
Cdd:PRK08375  426 YR 427
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 160-247 1.62e-17

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 77.59  E-value: 1.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 160 YSFRLFYYSMSGDNNFYSSYSFDDSGYFISFGMIGLLIIAVFGGSLLSWIIFPVPFMVSLPYYLKFLTMIVVILGSYLGY 239
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80


                  ....*...
gi 1273810820 240 LISNLSIS 247
Cdd:pfam06455  81 ELSNLSNK 88
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 17-163 5.03e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 79.85  E-value: 5.03e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  17 LVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLA----FFHLLTHALFKALLFMCAGpMIHNLKDSQ 92
Cdd:PRK12648  276 GAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAG-IIDHETGTR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810820  93 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDL----ILELVCLSWINCLIFFLYFISTGLTAAYSFR 163
Cdd:PRK12648  354 DMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATLAGAFSVAYSLR 428
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 1-171 4.16e-16

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 77.27  E-value: 4.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPmldIFGFGN----FLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL-------------- 62
Cdd:PRK12645  262 RFTP---IFAGSQvwfwTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLhyqgddskiyaaai 338

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  63 --AFFHLLTHALFKALLFMCAGPMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE----- 135
Cdd:PRK12645  339 taAIFHLINHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlna 417

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1273810820 136 ----LVCLSWINCLIFFLYFISTGLTAAYSFRLFYYSMSG 171
Cdd:PRK12645  418 teanLFSLDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFG 457
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-166 4.23e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 77.27  E-value: 4.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHL---LTHALFKALLFMCAGPMIHNlKDS 91
Cdd:PRK12644  270 VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGT 348

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELV----CLSWINCLIFFLYFISTGLTAAYSFRLFY 166
Cdd:PRK12644  349 RDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVlhdgALGPAGPVVLAGIVLGSILTVAYSLRFLW 427
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 15-135 6.67e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 76.50  E-value: 6.67e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGPMIHNlKDS 91
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSElaiKAAVLFLVAHSLYKGALFMVAGIIDHE-TGT 340

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12647  341 RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYE 384
PRK12646 PRK12646
DUF4040 family protein;
1-135 9.64e-16

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 76.33  E-value: 9.64e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGF-GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG----------YSKL------- 62
Cdd:PRK12646  262 RFTPLLGLSNMyIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaIASIyvfvlfa 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1273810820  63 AFFHLLTHALFKALLFMCAGPMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12646  342 ALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-166 1.66e-15

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 75.39  E-value: 1.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   8 IFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAGP 83
Cdd:PRK12667  291 RAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIG-TQLglaaALFHIINHAIAKSLLFLASGV 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  84 MIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLyFISTGLTAAYSFR 163
Cdd:PRK12667  370 FIHAAG-TRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVL-LIASAISLVGYFR 447


                  ...
gi 1273810820 164 LFY 166
Cdd:PRK12667  448 AWY 450
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 13-166 2.67e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 71.86  E-value: 2.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  13 NFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMCAGPMIHNlKDSQ 92
Cdd:PRK07390  285 TVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT-TITQ 363

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810820  93 DIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSkdlILELVCLSWINCLIFFLYFISTGLTAAYS----FRLFY 166
Cdd:PRK07390  364 DLTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA---LLRLADGLWAVSPWLVGVLLLVNALTAFNltrvFRLVF 438
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-164 2.88e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 71.72  E-value: 2.88e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   5 MLDIFGFGNFLLLV---GCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLF 78
Cdd:PRK08377  263 MQNANGWSSVLKLViimATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQagvDAGVFHMINHAIVKALLF 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  79 MCAGPMIHNLKDSQDIRFMGSVVNfMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILeLVCLSWINCLIFFLYFISTGLTA 158
Cdd:PRK08377  343 LAVGYVGITLGGTEIEKFEGLGKR-MPLTALALTIGALSTVGIPLFNVFWSKFRII-LAGLSAGYTWPVALVLGASVVEA 420


                  ....*.
gi 1273810820 159 AYSFRL 164
Cdd:PRK08377  421 VYYFRL 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-210 3.05e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 71.67  E-value: 3.05e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   2 FSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---------------AFFH 66
Cdd:PRK08376  277 YGPAINLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYH 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  67 LLTHALFKALLFMCAGPMIHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLswINCLI 146
Cdd:PRK08376  357 IVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPIL 433

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1273810820 147 FFLYFISTGLTAAYSFRLFYYSMSGDNNfYSSYSFDDSGYFISFGMIgLLIIAVFGGSLLSWII 210
Cdd:PRK08376  434 GVIAMIGSVLTLASFVKVFHTAFFGPPS-EKVMNVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 18-135 7.57e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 70.63  E-value: 7.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  18 VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIlsMGYSK---------LAFFHLLTHALFKALLFMCAGPMIHNL 88
Cdd:PRK12649  284 TGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTM--YGYTTyhepglgvaAATFHLLNHATFKACLFLVAGIVAHEA 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810820  89 KdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12649  362 A-TRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFYE 407
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-166 3.59e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 65.22  E-value: 3.59e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   8 IFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGYSKLAFFHLLTHALFKALLFMCAGPm 84
Cdd:PRK06589  276 IFAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS- 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  85 IHNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS---WINCLIFFLYFISTGLTAAYS 161
Cdd:PRK06589  355 IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIASSILSALYL 434


                  ....*
gi 1273810820 162 FRLFY 166
Cdd:PRK06589  435 LKILS 439
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 6-135 3.60e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 65.36  E-value: 3.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   6 LDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGysklAFFHlLTHALFKALLFMCAGpMI 85
Cdd:PRK07234  239 LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYA-LAHGLVKSTLFLCAG-AL 312

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810820  86 HNLKDSQDIRFMGSVVNFMPLTsvcfnVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07234  313 PSRNFTELISQMLGIGKWIPLT-----MASFSIAGFPLLAGFVSKVLTLK 357
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 11-166 6.85e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 64.63  E-value: 6.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYS---KLAFFHLLTHALFKALLFMCAGPMIHN 87
Cdd:PRK08668  271 FNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAVIYR 350

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1273810820  88 LKDSQdIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVcLSWINCLIFFLYFISTGLTAAYSFRLFY 166
Cdd:PRK08668  351 TGTTK-ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEAL-ISKGMPITAFMAFFGSIGSFLYVFRPLA 427
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-246 2.40e-11

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 62.97  E-value: 2.40e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFMC 80
Cdd:MTH00063  209 RYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFML 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  81 AGPMIHNLKDSQDIR-----FMGSVVNFMPLTSVCfnvssLSLCGMPFLAGFYSKDLILELVCLSWINCLIFFLYFISTG 155
Cdd:MTH00063  289 VGDVMSGSGGSQSSNcvyssILYGSWNLFYLFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVF 363

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820 156 LTAAYSFRLFyysmsgdNNFYSSYSFDDSGYFISFGMIGLLiiaVFGGSLLSWIIFPVPF-MVSLPYYLKFLTMIVVILG 234
Cdd:MTH00063  364 LSYLYSFRLC-------LILFGVKSSLSSGVRFLFFNSGLM---VFLWLFINYYVFLLLDeVVYLGVFISLVLLLVQLLG 433

                         250
                  ....*....|..
gi 1273810820 235 SYLGYLISNLSI 246
Cdd:MTH00063  434 LLVGVLFYDSNL 445
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 11-135 7.80e-11

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 61.67  E-value: 7.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGL-----------------MMSILSMGYsklAFFHLLTHALF 73
Cdd:PRK08667  269 WGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALGG---ALFHSLNHALF 345

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1273810820  74 KALLFMCAGPMIHNLKDsQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK08667  346 KSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 12-140 8.26e-11

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 61.44  E-value: 8.26e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGYSKL----------------AFFHLLTHALFKA 75
Cdd:PRK06521  276 GVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIF--VGLGLAMVfiaygmpllaalaltaALYHLLNHALFKS 353

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1273810820  76 LLFMCAGPMIHNLKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLS 140
Cdd:PRK06521  354 LLFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLLSS 417
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
10-134 8.30e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 61.45  E-value: 8.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  10 GFGNFLLLVGcMTMFMAGLGANF---EFDLKKIIALSTLSQLGLMMSILSMGySKL----AFFHLLTHALFKALLFMCAG 82
Cdd:PRK12668  236 AFPGTELLIY-IGAAMAVYGVFFallENDLRRLLSYHIVSQVGYMVAGIGIG-TALaingAVAHAFNHILYKGLLFMSAG 313

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1273810820  83 PMIHNLKDSqDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12668  314 AVLYRTGTE-KLTELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMII 364
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 12-127 6.64e-10

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 58.69  E-value: 6.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLA--------------FFHLLTHALFKALL 77
Cdd:PRK08042  245 GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVL 324

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810820  78 FMCAGPMIHNlKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGF 127
Cdd:PRK08042  325 FLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 11-134 1.02e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 58.06  E-value: 1.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGY--SKLAF----FHLLTHALFKALLFMCAGPM 84
Cdd:PRK06525  271 IGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAIlgSRLALegsiAYIFNHAFAKSLFFLVAGAL 350

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810820  85 IHNLkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06525  351 SYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIF 399
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 11-165 2.53e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 2.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGPMIHN 87
Cdd:COG1008   274 FAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVlLGIFALNPLGLqgAVLQMVSHGLITAALFLLVGVLYDR 353

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1273810820  88 LKdSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILELVCLSWIncLIFFLYFISTGLTAAYSFRLF 165
Cdd:COG1008   354 TH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWMY 428
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 13-135 3.27e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 56.50  E-value: 3.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  13 NFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGYSKL--AFFHLLTHALFKALLFMCAGPMIHnLK 89
Cdd:PRK07691  276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIlVGVAMMTESGMigAIYYLIHDMIVKAALFLLIGIMIK-IT 354

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1273810820  90 DSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK07691  355 GTTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 35-134 4.77e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.20  E-value: 4.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  35 DLKKIIALSTLSQLG-LMMSILSMGYSKL--AFFHLLTHALFKALLFMCAGPMIHNLKdSQDIRFMGSVVNFMPLTSVCF 111
Cdd:PRK05846  300 DIKKLIAYSSISHMGfVTLGIFAGNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFF 378

                          90       100
                  ....*....|....*....|...
gi 1273810820 112 NVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK05846  379 LFFAMASLGLPGTSGFVGEFLIL 401
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 10-135 1.25e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 48.81  E-value: 1.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  10 GFGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----GYSKlAFFHLLTHALFKALLFMCAGpMI 85
Cdd:PRK12665  271 GLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALstvaGLSG-AIYYVAHHITVQTTLFLVVG-LI 348

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1273810820  86 HNLKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK12665  349 ERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
1-82 1.32e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 48.54  E-value: 1.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDIFGFGNFLLL-VGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08168  251 RFAPLLEQAPPARWLLVlVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFL 330


                  ...
gi 1273810820  80 CAG 82
Cdd:PRK08168  331 SAS 333
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 11-166 3.43e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.44  E-value: 3.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKLAF---FHLLTHALFKALLFMCAGpMIHN 87
Cdd:PRK08676  272 FSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILHR 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  88 LKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELVCLS-WINCLIFFLYFIstgltAAYSFRLF 165
Cdd:PRK08676  351 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILlQLGGISvWLVLAVLLLLLL-----AASSFAIF 425


                  .
gi 1273810820 166 Y 166
Cdd:PRK08676  426 L 426
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 11-130 1.29e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 1.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  11 FGNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-YSKL--AFFHLLTHALFKALLFMCAGPMIHN 87
Cdd:PRK12662  278 FNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNtYYGLaaAVAYIVNHSIVKSALFMVSGSISYH 357

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810820  88 LkDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:PRK12662  358 F-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAK 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-134 2.20e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.92  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  12 GNFLLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFF----HLLTHALFKALLFmCAGPMIHN 87
Cdd:PRK06458  281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIF-FASGNVLQ 358

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1273810820  88 LKDSQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK06458  359 KYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLIL 405
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
15-134 5.77e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.79  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGYSKL---AFFHLLTHALFKALLFMCAGPMIHnLKDS 91
Cdd:PRK12663  275 LATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGY 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL 134
Cdd:PRK12663  354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 1-82 9.53e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 43.10  E-value: 9.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820   1 RFSPMLDiFGFGNFLLLVGCMTMFMAGLGANF-EFDLKKIIALSTLSQLGLMMSILSMGYSKLAFFHLLTHALFKALLFM 79
Cdd:PRK08601  255 RFSPLFH-DDIAQILLLIFASISVLIGTGISLvQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFL 333


                  ...
gi 1273810820  80 CAG 82
Cdd:PRK08601  334 QSG 336
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 15-137 5.84e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 40.58  E-value: 5.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGySKLAFFHLLTHALFKALLFMcagpMIHNLKdSQDI 94
Cdd:MTH00112  154 LLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYS-PKLTLLTFYIYILMTTPMFL----TLNTTS-TKTL 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810820  95 RFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLIL-ELV 137
Cdd:MTH00112  228 KDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTGFMPKWLILqELT 271
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
15-135 8.33e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.01  E-value: 8.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--YSKLA-FFHLLTHALFKALLFMCAGpMIHNLKDS 91
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtpLGIVAgIFHAINHVIYKSALFLGAG-IVSYRTKT 347

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1273810820  92 QDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSKDLILE 135
Cdd:PRK06277  348 SNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-130 6.29e-03

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 37.40  E-value: 6.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1273810820  15 LLLVGCMTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSIL----SMGYSkLAFFHLLTHALFKALLFMCAGPMIHNLKD 90
Cdd:COG1007   272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVS-AALFYLLAYLFMNLGAFAVILLLSRKGGE 350

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1273810820  91 SQDIRFMGSVVNFMPLTSVCFNVSSLSLCGMPFLAGFYSK 130
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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