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Conserved domains on  [gi|1272820894|gb|ATP66622|]
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DNA polymerase, partial [Shrew adenovirus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DNA_pol_B_2 super family cl44393
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-82 5.06e-20

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


The actual alignment was detected with superfamily member pfam03175:

Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 82.01  E-value: 5.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1272820894   1 DICGMYASALTH-PFPSGRPlnPFDRALAVKNWEIRLknsQTIDYFTPHLLPGIFTIDADPPAETYLDvlppfCSRKGGR 79
Cdd:pfam03175 227 DVNSLYPSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGR 296


                  ...
gi 1272820894  80 LCW 82
Cdd:pfam03175 297 LIW 299
 
Name Accession Description Interval E-value
DNA_pol_B_2 pfam03175
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-82 5.06e-20

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 82.01  E-value: 5.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1272820894   1 DICGMYASALTH-PFPSGRPlnPFDRALAVKNWEIRLknsQTIDYFTPHLLPGIFTIDADPPAETYLDvlppfCSRKGGR 79
Cdd:pfam03175 227 DVNSLYPSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGR 296


                  ...
gi 1272820894  80 LCW 82
Cdd:pfam03175 297 LIW 299
 
Name Accession Description Interval E-value
DNA_pol_B_2 pfam03175
DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also ...
 1-82 5.06e-20

DNA polymerase type B, organellar and viral; Like pfam00136, members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria, and in viruses.


Pssm-ID: 367375 [Multi-domain]  Cd Length: 455  Bit Score: 82.01  E-value: 5.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1272820894   1 DICGMYASALTH-PFPSGRPlnPFDRALAVKNWEIRLknsQTIDYFTPHLLPGIFTIDADPPAETYLDvlppfCSRKGGR 79
Cdd:pfam03175 227 DVNSLYPSAMKHyPMPYGKP--PYEEGLYIKDFQYPL---DKFGFFDAKIKPPIFTIDYIPPLPIRLD-----CSRKGGR 296


                  ...
gi 1272820894  80 LCW 82
Cdd:pfam03175 297 LIW 299
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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