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Conserved domains on  [gi|1271217868|gb|PHU31066|]
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hypothetical protein BC332_03159 [Capsicum chinense]

Protein Classification

STMP1 family protein( domain architecture ID 10633349)

STMP1 family protein is a DUF4535 domain-containing protein; similar to Homo sapiens short transmembrane mitochondrial protein 1 (STMP1) which acts as a subunit of mitochondrial respiratory complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4535 pfam15054
Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 ...
 4-46 8.18e-14

Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 that is found in eukaryotes. Members are generally less than 100 residues in length. Although the precise function of the domain is still unknown, members have a predicted N-terminal signal peptide sequence which suggests they are short secreted peptides.


:

Pssm-ID: 464473  Cd Length: 45  Bit Score: 58.38  E-value: 8.18e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1271217868  4 FGFMFGTLCGVYIAQNYTLPKIEDWAQSTYVKARELEKAYRNK 46
Cdd:pfam15054  3 FSFGLGTYCGIYVAQNYEVPNVKKLANTGLEKAKELEEQYRKP 45
 
Name Accession Description Interval E-value
DUF4535 pfam15054
Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 ...
 4-46 8.18e-14

Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 that is found in eukaryotes. Members are generally less than 100 residues in length. Although the precise function of the domain is still unknown, members have a predicted N-terminal signal peptide sequence which suggests they are short secreted peptides.


Pssm-ID: 464473  Cd Length: 45  Bit Score: 58.38  E-value: 8.18e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1271217868  4 FGFMFGTLCGVYIAQNYTLPKIEDWAQSTYVKARELEKAYRNK 46
Cdd:pfam15054  3 FSFGLGTYCGIYVAQNYEVPNVKKLANTGLEKAKELEEQYRKP 45
 
Name Accession Description Interval E-value
DUF4535 pfam15054
Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 ...
 4-46 8.18e-14

Domain of unknown function (DUF4535); This family includes the uncharacterized protein C7orf73 that is found in eukaryotes. Members are generally less than 100 residues in length. Although the precise function of the domain is still unknown, members have a predicted N-terminal signal peptide sequence which suggests they are short secreted peptides.


Pssm-ID: 464473  Cd Length: 45  Bit Score: 58.38  E-value: 8.18e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1271217868  4 FGFMFGTLCGVYIAQNYTLPKIEDWAQSTYVKARELEKAYRNK 46
Cdd:pfam15054  3 FSFGLGTYCGIYVAQNYEVPNVKKLANTGLEKAKELEEQYRKP 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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