|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
85-638 |
0e+00 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 744.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 85 ADWVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSLDLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQ 164
Cdd:cd10279 1 GNWLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTNRGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 165 AneaaPRDI-RRAW--ATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNSG 241
Cdd:cd10279 81 V----DRESgRKACcdVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 242 SEFGSRGYVTAFDAKTGKLAWRFFTVPGDPAKGFENDA-MAMAAKSWSGEWWKYGGGGTPWNAITFDESFNQILIGTGNG 320
Cdd:cd10279 157 AEFGVRGYVSAYDAETGKLVWRFYTVPGNPAKPFEHASlEAAAATWWTGEWWRTGGGGTVWDSITYDPELDLLYIGTGNG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 321 GPWNNKFRSndPKGQDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTNGFFYVI 400
Cdd:cd10279 237 SPWNRKVRS--PGGGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEIDGKPRKVLMHAPKNGFFYVL 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 401 DRADGKLISAGKIGKVTWADHIDLATGRPVERPGIRGEKGAAIIYPDNYGAHNWQAMSYNPRTGLAYIPYMQSGMKYgpa 480
Cdd:cd10279 315 DRATGKLLSAEPFVPVNWATGIDLKTGRPIENPEARYTKGPKLVFPGPLGAHNWHPMSYNPDTGLVYIPAQEIPAVY--- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 481 ltRAEAVDVDPNEKR--ISFRIGAAIEPMKDPGD-RLDGKGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGGNLVFQGTN 557
Cdd:cd10279 392 --EDDPGDFGYNPLGwnTGITPDATPPPAAAKRAlRKATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTA 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 558 TGKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSILVGYGAMGGMGGPGhDQGWKYGLQPRRLLSFALGGKANL 637
Cdd:cd10279 470 DGELAAYDARTGEKLWSFDTGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGP-PGAAGKVQNPGRLLVFKLGGKAVL 548
|
.
gi 1269188132 638 P 638
Cdd:cd10279 549 P 549
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
86-600 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 570.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 86 DWVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSLDLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQA 165
Cdd:TIGR03075 20 DWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSLGKQRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKILWKYDPKL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 166 neaaPRDIRRAWAT---NRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNSGS 242
Cdd:TIGR03075 100 ----PDDIIPVMCCdvvNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAAPLVVKGKVITGISGG 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 243 EFGSRGYVTAFDAKTGKLAWRFFTVPGDP---AKGFENDAMAMAAKSWSGEWWKYGGGgTPWNAITFDESFNQILIGTGN 319
Cdd:TIGR03075 176 EFGVRGYVTAYDAKTGKLVWRRYTVPGDMgylKKTGKPVGGDPGAKTWPGDAWKTGGG-ATWGTGSYDPETNLIYFGTGN 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 320 GGPWNNKFRsndpKGqDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTNGFFYV 399
Cdd:TIGR03075 255 PAPWNSHLR----PG-DNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYV 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 400 IDRADGKLISAGK-IGKVTWADHIDLATGRPVERPGIR---GEKGAAI-IYPDNYGAHNWQAMSYNPRTGLAYIPYMQSG 474
Cdd:TIGR03075 330 LDRTNGKLLSAEPfVDKVNWATGVDLKTGRPIEVPEARstdGKKGKPVeVCPGFLGGKNWQPMAYSPKTGLFYVPANHVC 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 475 MKYGPaltraeavdvdpneKRISFRIGAA-------IEPMKDpgdrlDGKGSLLAWDPVAQKVRWRVDYPTSLNAGTLTT 547
Cdd:TIGR03075 410 MDYWP--------------EKVSYKKGAAylgagftIKPPPD-----DHIGSLIAWDPITGKIVWEHKEDFPLWGGVLAT 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1269188132 548 GGNLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSILV 600
Cdd:TIGR03075 471 AGDLVFTGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLS 523
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
84-600 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 546.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 84 DADWVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSLDLDE--QSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTY 161
Cdd:COG4993 2 PGDWLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDlpERGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWRY 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 162 DPQANEAAPRdirrAWATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNSG 241
Cdd:COG4993 82 DPKLPDDAAC----CDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 242 SEFGSRGYVTAFDAKTGKLAWRFFTVPgdpakgfenDAMAMAAKSWS-GEWWKYGGGgTPWNAITFDESFNQILIGTGNG 320
Cdd:COG4993 158 GEFGPRGVVRAYDARTGKLVWRFDTIP---------DPGEPGAETWPpGDTWKRGGG-NVWGTMSYDPELGLVYLPTGNP 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 321 GP-WNNKFRsndpKGqDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTNGFFYV 399
Cdd:COG4993 228 APdWNGGQR----PG-DNLYSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPVDGKTRKALVQATKNGFIYV 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 400 IDRADGKLISAGKI-GKVTWADHIDLATGRPVERP-GIRGEkgAAIIYPDNYGAHNWQAMSYNPRTGLAYIPYMQSGMKY 477
Cdd:COG4993 303 LDRETGEPLVTQPFvKPPNWATEIDMWGATPIQTPpSLDGK--TTLICPGALGGKNWGPAAYDPETGLLYVPANELCMDY 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 478 gpaltraEAVDVDPNEKRISFRIGAAIEPMKDPGdrldgKGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGGNLVFQGTN 557
Cdd:COG4993 381 -------ELVPREYQAGAPYLGATLTMYPCPAPP-----WGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVFIGTL 448
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1269188132 558 TGKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSILV 600
Cdd:COG4993 449 DGYLRAFDAKTGKELWKFRLPSGGQATPMTYEVDGKQYVAVAA 491
|
|
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
83-600 |
2.16e-166 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 490.27 E-value: 2.16e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 83 RDADWVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSLDL-DEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTY 161
Cdd:cd10277 7 ETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFgGKQRGQESQPIVNDGVMYVTTSYNRVFAIDAKTGKELWKY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 162 DPQAneaaPRDIRRAW-ATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNS 240
Cdd:cd10277 87 KHRL----PEDIRPCCdVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKVIVGVS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 241 GSEFGSRGYVTAFDAKTGKLAWRFFTVPGDPAKGFEndamamaaKSWSGEWWKYGGGgTPWNAITFDESFNQILIGTGNG 320
Cdd:cd10277 163 GGEFGVRGFIAALDAETGKEVWRTYTVPGPGEPGST--------DTWPGDAWKTGGG-ATWLTGTYDPETNLLYWGVGNP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 321 GPWNNkfrsnDPKGQDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTNGFFYVI 400
Cdd:cd10277 234 APWNG-----DLRPGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYVL 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 401 DRADGKLISAGKIGKVTWADHIDLATGRPVERPG-IRGEKGAAI-IYPDNYGAHNWQAMSYNPRTGLAYIPYMQSGMKYG 478
Cdd:cd10277 309 DRTNGKLIWATPFVKKITWASIDLKTGRPIYDEDkVPPKKGKTVdFCPSFLGGKNWPPMAYSPDTGLFYVPANHWCMDLT 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 479 paltrAEAVDVDPNEkrisFRIGAAIEpMKDPGDrlDGKGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGGNLVFQGTNT 558
Cdd:cd10277 389 -----GEPVSYKKGA----AYLGAGFT-IKPPFE--DHIGELQAIDPTTGKKVWEHKTPLPLWGGVLTTAGGLVFTGTPD 456
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1269188132 559 GKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSILV 600
Cdd:cd10277 457 GYFRAFDAKTGKELWEFQTGSGIIGPPVTWEVDGKQYVAVLS 498
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
87-599 |
2.70e-129 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 395.54 E-value: 2.70e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 87 WVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSLDLDEQSALAATPIEVGGTLYFSGAFGHI-YAVD-ARTGRLLWTYDPQ 164
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWTFSTGVLRGHEGAPLVVGDTMYVVTPFPNNvYALDlNDPGKILWKYKPK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 165 ANEAAprdirRAWA----TNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNS 240
Cdd:cd10278 81 QDPSA-----VAVAccdvVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGIS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 241 GSEFGSRGYVTAFDAKTGKLAWRFFTVPGDPAKGFENDAMA---------MAAKSWSGEWWKYgGGGTPWNAITFDESFN 311
Cdd:cd10278 156 GGEFGVRGYVTAYDLKTGKLVWRAYSTGPDKDVLIGPDFNPfnphdggkdLGLSTWPGDAWKI-GGGTNWGWYSYDPKLN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 312 QILIGTGNGGPWNNKFRSNdpkgqDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQA 391
Cdd:cd10278 235 LVYYGTGNPGPWNPTQRPG-----DNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTVDGKKRKLLVHF 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 392 PTNGFFYVIDRADGKLISAGKIGKVTWADHIDLATGRPVERPGIRGEKGAAI--IYPDNYGAHNWQAMSYNPRTGLAYIP 469
Cdd:cd10278 310 DRNGFVYTLDRTTGELLSAEKFDPVNNWKGVDLKTGRPVKDPEKSTHMDHNVtdICPSAMGGKDQQPSSYSPKTGLFYVP 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 470 YMQSGMKYGPALTraeavdvdpNEKRISFRIGAAIEPMKDPGdrlDGKGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGG 549
Cdd:cd10278 390 TNHLCMDYEPFEV---------NYTAGQPYVGATLAMYPGPG---GHMGQFKAWDPVTGKTKWEIKERFPVWSGTLATAG 457
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1269188132 550 NLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSIL 599
Cdd:cd10278 458 GLVFYGTLDGWFKAVDAKTGKLLWKFKLPSGIIGNPITYKHDGKQYVAVL 507
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
107-600 |
6.85e-117 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 359.23 E-value: 6.85e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 107 DKNVGQLGLVWS--LDLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQANEAAPRDIRRAwaTNRGVA 184
Cdd:cd00216 1 ADNVFQLTPAWSfsTGDGGNRGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFEACCDL--VNRGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 185 YADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNSGSEFGSRGYVTAFDAKTGKLAWRF 264
Cdd:cd00216 79 VWGGKVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 265 FTVPGDPAKGFENDAMAMAAKSWSGEWWKY-GGGGTPWNAITFDESFNQILIGTGNGGPWNNKFrsnDPKGQDNLFLASV 343
Cdd:cd00216 159 YLVMPDPNLLPGKDSTVTDRNTPTGDEHTWtSGGGTGWSSAAYDAELNLIYVGGGNPTPWNWGG---NRTPGDNLYTSSI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 344 VAVDADSGAYKWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTNGFFYVIDRADGKLISAGKIGKvtwadhid 423
Cdd:cd00216 236 VAVNADTGEMKWQYQTTPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLVP-------- 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 424 latgrpverpgirgekgaaiiypdnygahnwqaMSYNPRTGLAYIPYMqsgmkygpaltraeavdvdpnekrisfrigaa 503
Cdd:cd00216 308 ---------------------------------DSYDPDRELFYVPAN-------------------------------- 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 504 iepmkdpgdrldgkGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGGNLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIA 583
Cdd:cd00216 323 --------------GRIMALDPVTGVVVWEKSELHPLLGGPLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQKVPSGFQA 388
|
490
....*....|....*..
gi 1269188132 584 PPISYSVDGRQYLSILV 600
Cdd:cd00216 389 EPVTYEVDGEQYVLIQA 405
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
87-598 |
1.34e-85 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 282.93 E-value: 1.34e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 87 WVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWS-------LDLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLW 159
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWTyhtgdlpGPDGNEGTFEATPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 160 TYDPQANEAAPrdirRAWATNRGVAY---------ADGRIFVATRDCRMVAVDARTGKLVwqSSF--------------L 216
Cdd:cd10280 81 RFDPKAGADAA----PGHQTCRGVSYwedgaaaaaCARRIFFGTGDARLIALDARTGKPC--PDFgdngvvdlreglgrV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 217 VPGSNStSTGAPRAFKGKVIIGNSGSEFGSR----GYVTAFDAKTGKLAWRFFTVPGDPAKGFEndamamaakswSGEWW 292
Cdd:cd10280 155 KPGFYS-STSPPTVYGDLVIVGSAVADNQAVdapsGVIRAFDVRTGKLVWAFDTIPPPGEAGPD-----------TAGAW 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 293 KYGGGGTPWNAITFDESFNQILIGTGNGGPwnnKFRSNDPKGqDNLFLASVVAVDADSGAYKWHYQYNPNEVWDYKATAD 372
Cdd:cd10280 223 YTRGGPNVWAGMSADEKLGLVYLPTGSATP---DFYGGDRPG-DNLFANSLVALDAATGKRRWHFQTVHHDLWDYDLPAQ 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 373 IILADIAVQGKTRKVMMQAPTNGFFYVIDRADGKLI--------SAGKI-GKVTWA----------------DHIDLATG 427
Cdd:cd10280 299 PTLVDVPRDGKTVPAVAQPTKQGFVFVLDRRTGKPLwpveerpvPQGDVpGERTSPtqpfptlpppfarqglTEDDMWGA 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 428 RPVER------------------PGIRGekgaAIIYPDNYGAHNWQAMSYNPRTGLAYIPYMQSGMkYGPALTRAEAVDV 489
Cdd:cd10280 379 TPFDQlacriqfrslryeglftpPSLDG----TLIFPGNDGGANWGGAAVDPERGILYVNSNRLPF-VIQLVPRAPGDPA 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 490 DPNEKRISFRIGAAIEPMKDP------GDRLDGK---------GSLLAWDPVAQKVRWRV---DYP-------------- 537
Cdd:cd10280 454 GVAGGGEGGGGGGGPSPQAGTpygvgrGRFLSPLglpcqappwGTLTAIDLNTGKILWQVplgTVPdlgpkgiplpiptg 533
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1269188132 538 TSLNAGTLTTGGNLVF-QGTNTGKLYAYSATTGERLWSFDTKLGIIAPPISYSVDGRQYLSI 598
Cdd:cd10280 534 TPNLGGPVVTAGGLVFiAATQDNYLRAFDKATGKELWEARLPAGGQATPMTYEVDGKQYVVI 595
|
|
| PQQ_membr_DH |
TIGR03074 |
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein ... |
84-598 |
1.51e-51 |
|
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Pssm-ID: 274418 [Multi-domain] Cd Length: 764 Bit Score: 192.14 E-value: 1.51e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 84 DADWVGYGNGHDEQRFVPVAQIDDKNVGQLGLVWSL--------DLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTG 155
Cdd:TIGR03074 135 AGDWAAYGRTQAGQRYSPLDQINPDNVGNLKVAWTYhtgdlktpDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATG 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 156 RLLWTYDPQANeaapRDIRRAWATNRGVAYADG------------------RIFVATRDCRMVAVDARTGKLVwqSSFlv 217
Cdd:TIGR03074 215 KEKWKFDPKLK----TEADRQHQTCRGVSYYDApaaaagpagpaapadcarRIILPTSDARLIALDADTGKLC--EDF-- 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 218 pGSNST----------------STGAPRAFKGKVIIGNSGSEFGSR----GYVTAFDAKTGKLAWRFftvpgDPAKGFEN 277
Cdd:TIGR03074 287 -GNNGTvdltagmgptppgyyyPTSPPLVAGTTVVIGGRVADNYSTdepsGVIRAFDVNTGALVWAW-----DPGNPDPT 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 278 DAMAmaakswSGEWWKYGgggTP--WNAITFDESFNQILIGTGNGGP--WNNKFRSNDPKgqdnlFLASVVAVDADSGAY 353
Cdd:TIGR03074 361 APPA------PGETYTRN---SPnsWSVASYDEKLGLVYLPMGNQTPdqWGGDRTPADEK-----YSSSLVALDATTGKE 426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 354 KWHYQYNPNEVWDYKATADIILADIAVQGKTRKVMMQAPTN-GFFYVIDRADGKLISAGKIGKVTWAD--HIDLATGRPV 430
Cdd:TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPKADGTTVPALVAPTKqGQIYVLDRRTGEPIVPVEEVPVPQGAvpGERYSPTQPF 506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 431 ERPGIR------------------------------------GEKGaAIIYPDNYGAHNWQAMSYNPRTGLA-----YIP 469
Cdd:TIGR03074 507 SVLTFGpptltesdmwgatpfdqlacriqfkslryeglytppSEQG-SLVFPGNLGGFNWGGVAVDPTRQVMfvnpmRLP 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 470 YMQSGMKYGPALTRAEAVD-------VDPNEK-----RISFRIGAAIEPMKDPgdrldGKGSLLAWDPVAQKVRWRVDYP 537
Cdd:TIGR03074 586 FVSQLVPRAPGDEAPSGAKgkgtemgLNPNKGtpyavNMNPFLSPLGIPCQAP-----PWGYMAAIDLKTGKVVWQHPNG 660
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 538 TSLN-------------------AGTLTTGGNLVFQG-TNTGKLYAYSATTGERLWSFDTKLGIIAPPISYS-VDGRQYL 596
Cdd:TIGR03074 661 TVRDtgpmgipmplpipigvptlGGPLATAGGLVFIGaTQDNYLRAYDLSTGKELWEARLPAGGQATPMTYMgKDGKQYV 740
|
..
gi 1269188132 597 SI 598
Cdd:TIGR03074 741 VI 742
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
114-262 |
1.75e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 79.37 E-value: 1.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 114 GLVWSLDLdeQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQA-NEAAPrdirrawatnrgvAYADGRIFV 192
Cdd:pfam13360 14 AELWRVDL--ETGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGeVLGAP-------------LVAGGRVFV 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 193 ATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGNSGSEfgsrgyVTAFDAKTGKLAW 262
Cdd:pfam13360 79 VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGK------LVALDPATGKVRW 142
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
112-264 |
5.69e-15 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 77.16 E-value: 5.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 112 QLGLVWSLDLD---EQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQANEAAprdirrawatnrGVAYADG 188
Cdd:COG1520 31 KVKQLWSASVGdgvGKGYSRLAPAVAGDRVYAADADGRVAALDAATGKELWRVDLGEPLSG------------GVGADGG 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1269188132 189 RIFVATRDCRMVAVDARTGKLVWQSSflVPGSnstSTGAPRAFKGKVIIgNSGSefgsrGYVTAFDAKTGKLAWRF 264
Cdd:COG1520 99 LVVVGTEDGEVIALDADDGEELWRAR--LSSE---VLAAPAVAGGRVVV-RTGD-----GRVYALDAATGERLWSY 163
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
143-283 |
1.26e-14 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 73.98 E-value: 1.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 143 AFGHIYAVDARTGRLLWTYDPQANEAAprdirrawatnrGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSns 222
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLETGLGG------------GVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVL-- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1269188132 223 tstGAPRAFKGKVIIgnsgseFGSRGYVTAFDAKTGKLAWRfFTVPGDPAKGFENDAMAMA 283
Cdd:pfam13360 67 ---GAPLVAGGRVFV------VAGDGSLIALDAADGRRLWS-YQRSGEPLALRSSGSPAVV 117
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
107-357 |
4.80e-14 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 74.29 E-value: 4.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 107 DKNVGQLglVWSLDLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLW-TYDPQANEAAPrdirrawatnrgVAY 185
Cdd:cd10276 54 NATTGKI--IWETSLSGKGFLGGTPAVGNGKIFVGTESGYLYALDAKDGSELWrTEVSDSQLLSP------------PTY 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 186 ADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNSTSTGAPRAFKGKVIIGnsgsefGSRGYVTAFDAKTGKLAWRFf 265
Cdd:cd10276 120 ADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVG------DGNGTVVALNTGTGVDIWEF- 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 266 tvpgdpAKGFENDAMAMAAKSWSgewwkyggggtpwnAITFDESFNQILIGTGNGGPWNNKFRSNDPKGQDN-------- 337
Cdd:cd10276 193 ------SVSEPRGRTELPRMIDS--------------SVTYVVVGGYLYSTSYQGYLVALDFESGQFLWSRKasggtsts 252
|
250 260 270
....*....|....*....|....*....|
gi 1269188132 338 ------LFLA----SVVAVDADSGAYKWHY 357
Cdd:cd10276 253 tdangrVYVGdgegSLYCLDASTGDELWSQ 282
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
115-262 |
4.34e-13 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 69.35 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 115 LVWSLDLDEQsaLAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQANEAAPRdirrawaTNRGVAYADGRIFVAT 194
Cdd:pfam13360 55 LLWRQTLSGE--VLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALR-------SSGSPAVVGDTVVAGF 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1269188132 195 RDCRMVAVDARTGKLVWQSSFLVP-GSNSTS-----TGAPRAFKGKV-IIGNSGSefgsrgyVTAFDAKTGKLAW 262
Cdd:pfam13360 126 SSGKLVALDPATGKVRWEAPLAAPrGTNELErlvdiTGTPVVAGGRVfASAYQGR-------LVAFDAATGRRLW 193
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
130-263 |
1.22e-12 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 70.05 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 130 TPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPqaneaaPRDIRrawaTNRGVAYADGRIFVATRDCRMVAVDARTGKL 209
Cdd:cd10276 33 TPVVAGDMVYAADANGQVSAFNATTGKIIWETSL------SGKGF----LGGTPAVGNGKIFVGTESGYLYALDAKDGSE 102
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1269188132 210 VWQSSflVPGSNSTStgAPRAFKGKVIIGNSGSEfgsrgyVTAFDAKTGKLAWR 263
Cdd:cd10276 103 LWRTE--VSDSQLLS--PPTYADGKIYVGTGDGR------LYYCNAETGKVVWN 146
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
74-263 |
6.80e-12 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 67.92 E-value: 6.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 74 RSSGAPTQGRDADWVGYGNGHdeqrfvpVAQIDDKNvGQLglVWSL---------DLDEQSALAATPIEVGGTLYFSGAF 144
Cdd:COG1520 173 RGTSSPVIVGGAVLVGFANGK-------LVALDLAN-GQP--LWEQrvaqprgrtELERLVDVDGTPVVDGGVVYAVAYQ 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 145 GHIYAVDARTGRLLWTydpqaneaapRDIrrawATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVpgsnSTS 224
Cdd:COG1520 243 GRLAALDLRSGRVLWS----------RDL----SSYTGLAVDGNNLYVTDDDGRVWALDRRNGAELWKQDALL----YRG 304
|
170 180 190
....*....|....*....|....*....|....*....
gi 1269188132 225 TGAPRAFKGKVIIGNsgsefgSRGYVTAFDAKTGKLAWR 263
Cdd:COG1520 305 LTAPVVLGDYVVVGD------FEGYLHWLSRDDGSLVAR 337
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
95-268 |
6.96e-12 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 67.65 E-value: 6.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 95 DEQRFVPVAQIDDKNVGQLGLVWSLDL---DEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPQANEAApr 171
Cdd:TIGR03300 22 EDDEPQPAELPEFQPTVKVDQVWSASVgdgVGHYYLRLQPAVAGGKVYAADADGTVAALDAETGKRLWRVDLDERLSG-- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 172 dirrawatnrGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFlvpgsNSTSTGAPRAFKGKVIIGnsgsefGSRGYVT 251
Cdd:TIGR03300 100 ----------GVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-----SSEVLSPPLVANGLVVVR------TNDGRLT 158
|
170
....*....|....*..
gi 1269188132 252 AFDAKTGKLAWRFFTVP 268
Cdd:TIGR03300 159 ALDAATGERLWTYSRVT 175
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
74-263 |
1.32e-11 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 66.88 E-value: 1.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 74 RSSGAPTQGRDADWVGYGNGhdeqRFVPVaqidDKNVGQLglVW---------SLDLDEQSALAATPIEVGGTLYFSGAF 144
Cdd:TIGR03300 181 RGSASPVIADGGVLVGFAGG----KLVAL----DLQTGQP--LWeqrvalpkgRTELERLVDVDGDPVVDGGQVYAVSYQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 145 GHIYAVDARTGRLLWTydpqaneaapRDIrrawATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVpgsnSTS 224
Cdd:TIGR03300 251 GRVAALDLRSGRVLWK----------RDA----SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELK----YRQ 312
|
170 180 190
....*....|....*....|....*....|....*....
gi 1269188132 225 TGAPRAFKGKVIIGNsgsefgSRGYVTAFDAKTGKLAWR 263
Cdd:TIGR03300 313 LTAPAVLGGYLVVGD------FEGYLHWLDRDDGSFVAR 345
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
129-260 |
7.79e-09 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 58.40 E-value: 7.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 129 ATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTydpqaneaaprdirRAWATNRGVAYADGRIFVATRDCRMVAVDARTGK 208
Cdd:PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWK--------------REYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV 315
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1269188132 209 LVWQSSFLVpGSNSTstgAPRAFKGKVIIGNsgsefgSRGYVTAFDAKTGKL 260
Cdd:PRK11138 316 ELWSQSDLL-HRLLT---APVLYNGYLVVGD------SEGYLHWINREDGRF 357
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
74-263 |
3.07e-08 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 56.19 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 74 RSSGAPTQGRDADWVGYGNGHdeqrfvpVAQIDDKNvGQLglVWSLDLdEQSALAATPIEVGGTLYFSGAFGHIYAVDAR 153
Cdd:cd10276 71 FLGGTPAVGNGKIFVGTESGY-------LYALDAKD-GSE--LWRTEV-SDSQLLSPPTYADGKIYVGTGDGRLYYCNAE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 154 TGRLLWTYDPQANEAAprdIRRAWAtnrgVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNST------STGA 227
Cdd:cd10276 140 TGKVVWNRTSTAPELS---LRGGAA----PVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTElprmidSSVT 212
|
170 180 190
....*....|....*....|....*....|....*.
gi 1269188132 228 PRAFKGKVIIGNSGsefgsrGYVTAFDAKTGKLAWR 263
Cdd:cd10276 213 YVVVGGYLYSTSYQ------GYLVALDFESGQFLWS 242
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
511-593 |
3.19e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 56.36 E-value: 3.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 511 GDRL---DGKGSLLAWDPVAQKVRWRVDYPTSLNAGtLTTGGNLVFQGTNTGKLYAYSATTGERLWSfdTKLG--IIAPP 585
Cdd:COG1520 57 GDRVyaaDADGRVAALDAATGKELWRVDLGEPLSGG-VGADGGLVVVGTEDGEVIALDADDGEELWR--ARLSseVLAAP 133
|
90
....*....|....*
gi 1269188132 586 IS-------YSVDGR 593
Cdd:COG1520 134 AVaggrvvvRTGDGR 148
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
184-269 |
4.03e-08 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 56.09 E-value: 4.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 184 AYADGRIFVATRDCRMVAVDARTGKLVWQSSF-----LVPGSNSTS-TGAPRAFKGKVIIgnsGSEfgsRGYVTAFDAKT 257
Cdd:PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLsekdgWFSKNKSALlSGGVTVAGGKVYI---GSE---KGQVYALNAED 139
|
90
....*....|..
gi 1269188132 258 GKLAWRfFTVPG 269
Cdd:PRK11138 140 GEVAWQ-TKVAG 150
|
|
| CccA |
COG2010 |
Cytochrome c, mono- and diheme variants [Energy production and conversion]; |
572-738 |
4.33e-08 |
|
Cytochrome c, mono- and diheme variants [Energy production and conversion];
Pssm-ID: 441613 [Multi-domain] Cd Length: 169 Bit Score: 53.41 E-value: 4.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 572 LWSFDTKLGIIAPPISYSVDGRQYLSILVGYGAMGGMGGPGHDQGWKYGLQPRRLLSFALGGKANLPATPPPDFVVHKLD 651
Cdd:COG2010 1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLALLLAAAAAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 652 DPrlALDPKRVRTGAKVYAMlTCGMCHGAAAI-ASGNAPDLRESGV-ALDRSAFKEILKGGaLVSRGMPLFDD-LSDREI 728
Cdd:COG2010 81 AP--AADAEALARGKALYEQ-NCAACHGADGKgGLGAAPNLTDDALyGGDPEALVETILNG-RPGGAMPAFGGqLSDEEI 156
|
170
....*....|
gi 1269188132 729 EDLYQYIRAR 738
Cdd:COG2010 157 AALAAYLRSL 166
|
|
| Cytochrome_CBB3 |
pfam13442 |
Cytochrome C oxidase, cbb3-type, subunit III; |
661-735 |
5.07e-08 |
|
Cytochrome C oxidase, cbb3-type, subunit III;
Pssm-ID: 463879 [Multi-domain] Cd Length: 67 Bit Score: 50.10 E-value: 5.07e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1269188132 661 RVRTGAKVYAMlTCGMCHGAAaiasGNAPDLResGVALDRSAFKEILKGGalvSRGMPLF-DDLSDREIEDLYQYI 735
Cdd:pfam13442 2 AAAAGEALYAA-NCASCHGTG----GAGPSLA--GRALPPEALVDIIRNG---KGAMPAFgGDLSDEELEALAAYL 67
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
145-263 |
3.07e-07 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 53.28 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 145 GHIYAVDARTGRLLWTYDpqaNEAAPRDIRrawaTNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVP-GSNST 223
Cdd:COG1520 147 GRVYALDAATGERLWSYQ---RPVPALTLR----GTSSPVIVGGAVLVGFANGKLVALDLANGQPLWEQRVAQPrGRTEL 219
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1269188132 224 S-----TGAP---------RAFKGKV--IIGNSGS-----EFGS----------------RGYVTAFDAKTGKLAWR 263
Cdd:COG1520 220 ErlvdvDGTPvvdggvvyaVAYQGRLaaLDLRSGRvlwsrDLSSytglavdgnnlyvtddDGRVWALDRRNGAELWK 296
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
515-589 |
9.47e-07 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 51.86 E-value: 9.47e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1269188132 515 DGKGSLLAWDPVAQKVRWRVDYPTSLNAGTlTTGGNLVFQGTNTGKLYAYSATTGERLWSfdTKLG--IIAPPISYS 589
Cdd:TIGR03300 72 DADGTVAALDAETGKRLWRVDLDERLSGGV-GADGGLVFVGTEKGEVIALDAEDGKELWR--AKLSseVLSPPLVAN 145
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
120-213 |
2.05e-06 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 49.71 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 120 DLDEQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTydpqaneaapRDIrrawATNRGVAYADGRIFVATRDCRM 199
Cdd:pfam13360 154 ELERLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWT----------REI----SGPNGPILDGDLLYVVSDDGEL 219
|
90
....*....|....
gi 1269188132 200 VAVDARTGKLVWQS 213
Cdd:pfam13360 220 YALDRATGAVVWKT 233
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
88-262 |
4.43e-06 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 49.54 E-value: 4.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 88 VGYGNGHDEQRFVPVAQID--------------DKNVGQLglVWSLDLDE--------QSALAATPIEV-GGTLYFSGAF 144
Cdd:PRK11138 52 VGDGVGDYYSRLHPAVAYNkvyaadraglvkalDADTGKE--IWSVDLSEkdgwfsknKSALLSGGVTVaGGKVYIGSEK 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 145 GHIYAVDARTGRLLWTYDpQANEA--APrdirrawatnrgvAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNS 222
Cdd:PRK11138 130 GQVYALNAEDGEVAWQTK-VAGEAlsRP-------------VVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1269188132 223 TSTGAPRAFKGKVIIGnsgsefGSRGYVTAFDAKTGKLAW 262
Cdd:PRK11138 196 RGESAPATAFGGAIVG------GDNGRVSAVLMEQGQLIW 229
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
130-264 |
9.07e-06 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 48.77 E-value: 9.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 130 TPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDPqaneaapRDIRRAWATNR------GVAYADGRIFVATRDCRMVAVD 203
Cdd:PRK11138 64 HPAVAYNKVYAADRAGLVKALDADTGKEIWSVDL-------SEKDGWFSKNKsallsgGVTVAGGKVYIGSEKGQVYALN 136
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1269188132 204 ARTGKLVWQSSflVPGSnstSTGAPRAFKGKVIIgNSgsefgSRGYVTAFDAKTGKLAWRF 264
Cdd:PRK11138 137 AEDGEVAWQTK--VAGE---ALSRPVVSDGLVLV-HT-----SNGMLQALNESDGAVKWTV 186
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
510-577 |
1.15e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 47.40 E-value: 1.15e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1269188132 510 PGDRL---DGKGSLLAWDPVAQKVRWRVDyPTSLNAGTLTTGGNLVFQGTNTGKLYAYSATTGERLWSFDT 577
Cdd:pfam13360 32 DGGRLfvaTGGGQLVALDAATGKLLWRQT-LSGEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQR 101
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
514-596 |
3.40e-05 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 46.94 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 514 LDGKGSLLAWDPVAQKVRWRVDYPTSLN-AGTLTTGGNLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAPPISYSvDG 592
Cdd:cd10276 44 ADANGQVSAFNATTGKIIWETSLSGKGFlGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTYA-DG 122
|
....
gi 1269188132 593 RQYL 596
Cdd:cd10276 123 KIYV 126
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
74-222 |
3.98e-05 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 46.56 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 74 RSSGAPTQGRDADWVGYGNGHdeqrfvpvaqIDDKNVGQLGLVWSLDLDE---QSALA------ATPIEVGGTLYFSGAF 144
Cdd:cd10276 157 RGGAAPVGAYDVVFVGDGNGT----------VVALNTGTGVDIWEFSVSEprgRTELPrmidssVTYVVVGGYLYSTSYQ 226
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1269188132 145 GHIYAVDARTGRLLWTydpqaneaaprdiRRAWATNRGVAYADGRIFVATRDCRMVAVDARTGKLVWQSSFLVPGSNS 222
Cdd:cd10276 227 GYLVALDFESGQFLWS-------------RKASGGTSTSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLS 291
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
516-585 |
5.05e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 45.47 E-value: 5.05e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 516 GKGSLLAWDPVAQKVRWRVDYPTSLNAGtLTTGGNLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAPP 585
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLETGLGGG-VAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGAP 69
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
550-585 |
5.09e-05 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 41.02 E-value: 5.09e-05
10 20 30
....*....|....*....|....*....|....*.
gi 1269188132 550 NLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAPP 585
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGGAVLSSP 36
|
|
| Cytochrom_C |
pfam00034 |
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ... |
665-736 |
6.36e-05 |
|
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.
Pssm-ID: 459641 [Multi-domain] Cd Length: 89 Bit Score: 42.14 E-value: 6.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 665 GAKVYAMlTCGMCHGAAAI-ASGNAPDLRESGVALDRSAFKEILKGGALVSRG------------MPLFDDLSDREIEDL 731
Cdd:pfam00034 3 GKKLFAA-NCAACHGVNGEgAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGgvdraggppgtgMPAFDGLTDEEIADL 81
|
....*
gi 1269188132 732 YQYIR 736
Cdd:pfam00034 82 VAYLL 86
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
517-587 |
7.38e-05 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 45.69 E-value: 7.38e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1269188132 517 KGSLLAWDPVAQKVRWRvdypTSLNAGTLT---TGGNLVFQGTNTGKLYAYSATTGERLWSFDTklgiIAPPIS 587
Cdd:TIGR03300 114 KGEVIALDAEDGKELWR----AKLSSEVLSpplVANGLVVVRTNDGRLTALDAATGERLWTYSR----VTPPLT 179
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
100-270 |
9.65e-05 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 45.68 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 100 VPVAQIDDKNvgqlGLVWSLDLDEQSALAATP-----IEVGGTLYFSGAFGHIYAVDARTGRLLWTYdpqaneaapRDIR 174
Cdd:cd00216 277 VKVLFAPAKN----GNFYVLDRRNGELVSARPlvpdsYDPDRELFYVPANGRIMALDPVTGVVVWEK---------SELH 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 175 RAWATNrgVAYADGRIFVATRDCRMVAVDARTGKLVWQssFLVP-GSNSTSTGAPRAFKGKVIIgnsgsefgSRGYVTAF 253
Cdd:cd00216 344 PLLGGP--LSTAGNLVFVGTSDGYLKAYNADTGEKLWQ--QKVPsGFQAEPVTYEVDGEQYVLI--------QAGGGGAF 411
|
170
....*....|....*..
gi 1269188132 254 DAKTGKLAWRFFTVPGD 270
Cdd:cd00216 412 PLWGGMADLTRGTQMGG 428
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
110-254 |
2.31e-04 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 44.25 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 110 VGQLGLVWSLDLD--------EQSALAATPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYDP--QANEAAPrdirrawat 179
Cdd:cd10276 223 TSYQGYLVALDFEsgqflwsrKASGGTSTSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVllGRVLSSP--------- 293
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1269188132 180 nrgVAYADGRIFVATRDCRMVAVDARTGKLVWQssFLVPGSNSTSTGAPRAFKGKVIIGNSGsefgsrGYVTAFD 254
Cdd:cd10276 294 ---AIYVGVYIYVTDNAEGYLYCLKDNDGLTVA--RVEVDYSQYILQGPAVSDGWLYYGTDD------GYLYALT 357
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
515-586 |
2.44e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 44.15 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 515 DGKGSLLAWDPVAQKVRWRVDY----------PTSLNAGTLTTGGNLVFQGTNTGKLYAYSATTGERLWSFDTKLGIIAP 584
Cdd:PRK11138 76 DRAGLVKALDADTGKEIWSVDLsekdgwfsknKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSR 155
|
..
gi 1269188132 585 PI 586
Cdd:PRK11138 156 PV 157
|
|
| c550_PedF |
TIGR04494 |
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote ... |
658-738 |
2.48e-04 |
|
cytochrome c-550 PedF; Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.
Pssm-ID: 275287 Cd Length: 133 Bit Score: 41.61 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 658 DPKRVRTGAKVYAMlTCGMCHGAAAIASGNAPDLRESGVALDRSA-FKEILKGGAlvSRG----MPLFDD-LSDREIEDL 731
Cdd:TIGR04494 47 HKEAIRIGASAYNQ-NCARCHGLEAISGGIAPDLRKLDAGEDGDEwFVERVRHGA--VRDgrvyMPPFEGiLSQEALWAI 123
|
....*..
gi 1269188132 732 YQYIRAR 738
Cdd:TIGR04494 124 RTYLETV 130
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
544-576 |
3.70e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 38.28 E-value: 3.70e-04
10 20 30
....*....|....*....|....*....|...
gi 1269188132 544 TLTTGGNLVFQGTNTGKLYAYSATTGERLWSFD 576
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
183-212 |
5.07e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 37.90 E-value: 5.07e-04
10 20 30
....*....|....*....|....*....|
gi 1269188132 183 VAYADGRIFVATRDCRMVAVDARTGKLVWQ 212
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWT 31
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
188-212 |
6.43e-04 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 37.56 E-value: 6.43e-04
|
| TsdA |
COG3258 |
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ... |
649-751 |
7.65e-04 |
|
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];
Pssm-ID: 442489 [Multi-domain] Cd Length: 216 Bit Score: 41.76 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 649 KLDDPRLALDPKRvrtGAKVYAMlTCGMCHGA------AAIASGNAPDLRESGVALDRSAFKEILK-GGALVSRGMPLFD 721
Cdd:COG3258 107 KLPKPAASADVER---GKALYAE-RCASCHGAdgegqgRADGQYGFPPLWGGDSYNDGAGMARLGTlADFIKGRNMPLGK 182
|
90 100 110
....*....|....*....|....*....|....
gi 1269188132 722 D--LSDREIEDLYQYIRARAR--ARDTEQAEVRG 751
Cdd:COG3258 183 PgsLSDDEAWDVAAYVRSLPRpvPRKTDVPAVRK 216
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
518-573 |
1.14e-03 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 42.11 E-value: 1.14e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1269188132 518 GSLLAWDPVAQKVRWRVDYPT---SL-NAGTLTTGGNLVFQGTNTGKLYAYSATTGERLW 573
Cdd:COG1520 147 GRVYALDAATGERLWSYQRPVpalTLrGTSSPVIVGGAVLVGFANGKLVALDLANGQPLW 206
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
130-162 |
1.36e-03 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 36.74 E-value: 1.36e-03
10 20 30
....*....|....*....|....*....|...
gi 1269188132 130 TPIEVGGTLYFSGAFGHIYAVDARTGRLLWTYD 162
Cdd:smart00564 1 PVVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
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| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
517-577 |
1.43e-03 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 41.72 E-value: 1.43e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1269188132 517 KGSLLAWDPVAQKVRWRVDYPTSLNAGTLTTGGNLVFQgTNTGKLYAYSATTGERLWSFDT 577
Cdd:COG1520 106 DGEVIALDADDGEELWRARLSSEVLAAPAVAGGRVVVR-TGDGRVYALDAATGERLWSYQR 165
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|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
136-165 |
1.74e-03 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 36.40 E-value: 1.74e-03
10 20 30
....*....|....*....|....*....|
gi 1269188132 136 GTLYFSGAFGHIYAVDARTGRLLWTYDPQA 165
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSFKTGG 30
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