|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-335 |
6.48e-75 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 234.33 E-value: 6.48e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 1 MMMNPSKILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHL 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 81 MVMLPSILENLIpclISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINtFTSLIIITSIII 160
Cdd:MTH00160 81 NLMLFNNISSML---INSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 161 GSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLTLDST-MKFSL 239
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKkIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 240 FLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFTQMELKWtNTPMYSSLLNTIL 319
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKW-NLKKKKNKFSLIL 315
|
330
....*....|....*.
gi 1268890591 320 FILVNLGLSGLLLCTL 335
Cdd:MTH00160 316 NFLSFISLFGLILSSL 331
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-281 |
1.37e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 106.63 E-value: 1.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 24 SDSWLGAWAGLEINLLSFIPLMT-NSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLM--------------VMLPSIL 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYtgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 89 ENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLIL-MTWQKIAPLMLL-------SYIIPINTFTSLIIITSIII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 161 GSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGEN----TWMFYLLIYSLLTTCLCLMFYNF-----NIYYLTQCFTL-T 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLaK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1268890591 231 LDSTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIAT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-331 |
4.43e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 75.75 E-value: 4.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 8 ILFLMTLFsGTLVTICSDSWLGAWAGLEINLLSFIPLMTNS-KNMMSTEASLKYFLIQAIASAIFLFSVLIMH------- 79
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 ---LMVMLPSILENLIPC-----LISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIA---PLMLLSYIIPINT 148
Cdd:TIGR01770 185 fedLLLFLSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 149 FTSLIIITSIIIGS------LGGLNQTSLRKIMSYSSINHMGWMI----GGMMTGENTWMFYLLIYSLLT----TCLCLM 214
Cdd:TIGR01770 265 SEAWQIFLAIIAFLsmlignFGALAQKKVKRLLAYSSISHVGYILigllAGTLEGIKAVLFYIFIYALMSlgafGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 215 F---YNFNIYYLTQCFTLTLDSTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:TIGR01770 345 RsykDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1268890591 292 TfSSFLFTQMELKWTNTPMYSSLLNTILFILVNLGLSGLL 331
Cdd:TIGR01770 425 V-KVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLF 463
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-291 |
1.43e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 74.38 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 10 FLMTLFS--GTLVTICSDSWLGAWAGLEINLLSFIPL-MTNSKNMMSTEASLKYFLIQAIASAIFLF----------SVL 76
Cdd:COG1007 105 YALLLFAtlGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 77 IMHLMVMLPSILENLIP-----CLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIA---PLMLLSYIIPINT 148
Cdd:COG1007 185 LAGIAAALAAGGANSPLlllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 149 FTSLIIITSIIIGS------LGGLNQTSLRKIMSYSSINHMGWMIGGMMT----GENTWMFYLLIYSLLTT----CLCLM 214
Cdd:COG1007 265 AADWQLLLAVLAVLsmtvgnLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtplGVSAALFYLLAYLFMNLgafaVILLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 215 ----FYNFNIY----------YLTQCFTLTLDStmkfslfltllsLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIA 280
Cdd:COG1007 345 srkgGEAEEIEdlaglarrspLLALAMTIFLLS------------LAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLN 412
|
330
....*....|.
gi 1268890591 281 TLITVFFYLRL 291
Cdd:COG1007 413 SVISAYYYLRV 423
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-335 |
6.48e-75 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 234.33 E-value: 6.48e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 1 MMMNPSKILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHL 80
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 81 MVMLPSILENLIpclISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINtFTSLIIITSIII 160
Cdd:MTH00160 81 NLMLFNNISSML---INSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAII 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 161 GSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLTLDST-MKFSL 239
Cdd:MTH00160 157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKkIKFLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 240 FLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFTQMELKWtNTPMYSSLLNTIL 319
Cdd:MTH00160 237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKW-NLKKKKNKFSLIL 315
|
330
....*....|....*.
gi 1268890591 320 FILVNLGLSGLLLCTL 335
Cdd:MTH00160 316 NFLSFISLFGLILSSL 331
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
3-327 |
7.22e-58 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 190.83 E-value: 7.22e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 3 MNPS-KILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLM 81
Cdd:MTH00105 1 MNPLiLIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 82 V---MLPSILENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIP-INTFTSLIIITS 157
Cdd:MTH00105 81 SgqwTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPsINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 158 IIIG-SLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMF-YNFNIYYLTQCFTLTLDSTM 235
Cdd:MTH00105 161 SILIgGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLmLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 236 KFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFT-----QMELKWTNTPM 310
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfpstnNMKMKWQFENT 320
|
330
....*....|....*..
gi 1268890591 311 YSSLLNTILFILVNLGL 327
Cdd:MTH00105 321 KPMTLLPTLIILSTMLL 337
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
2-337 |
2.09e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 178.54 E-value: 2.09e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 2 MMNPSKILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLM 81
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 82 VMLPsilenLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFTSLIIITSIIIG 161
Cdd:MTH00144 81 SFSW-----FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLSA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 162 SLG---GLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLTLDSTMKFS 238
Cdd:MTH00144 156 LVGsigGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLS 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 239 LFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFlftqmeLKWTNTPMYSSLLNTI 318
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSF------LSSSKSKKSNSSKVLN 309
|
330
....*....|....*....
gi 1268890591 319 LFILVNLGLSGLLLCTLVT 337
Cdd:MTH00144 310 SSIISLNLLGGLLFLLLYL 328
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
8-338 |
1.25e-52 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 177.43 E-value: 1.25e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 8 ILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLMV---ML 84
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSgswSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 85 PSILENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFTSLIIITSIIIGS-- 162
Cdd:MTH00041 87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVgg 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 163 LGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLTLDSTMKFSLFLT 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 243 LLSLGG-LPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTF--SSFLFTQMELKWTNTPMYS--SLLNT 317
Cdd:MTH00041 247 SILSLGgLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFntSLTLFPQHSISLFSWRNSGniTVYGV 326
|
330 340
....*....|....*....|.
gi 1268890591 318 ILFILVNLGLSGLLLCTLVTS 338
Cdd:MTH00041 327 ILSILSSISILGLLLIPLFLS 347
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
3-317 |
2.36e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 176.55 E-value: 2.36e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 3 MNP-SKILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLM 81
Cdd:MTH00112 1 MNPhAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 82 VMLPSI--LENLIPC-LISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLsYIIPINTFTSLIIITSI 158
Cdd:MTH00112 81 TGQWDItqLTNPTSCtLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-LMTSNSLNPTLLLTLAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 159 IIGSLGG---LNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTL-TLDST 234
Cdd:MTH00112 160 LSTLIGGwggLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSwTKSPT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 235 MKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLF-----TQMELKWTNTP 309
Cdd:MTH00112 240 LNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITlppntTNMMMKWRTKP 319
|
....*...
gi 1268890591 310 MYSSLLNT 317
Cdd:MTH00112 320 KKNTLTAT 327
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
3-299 |
1.15e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 174.72 E-value: 1.15e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 3 MNPSKI-LFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVL----- 76
Cdd:MTH00070 1 MSPYALsILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTinawf 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 77 -----IMHLMVMLPSIlenlipcLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPI--NTF 149
Cdd:MTH00070 81 tgewtIMNMQTPLPTI-------MLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlnSNL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 150 TSLIIITSIIIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNF---NIYYLTQC 226
Cdd:MTH00070 154 LIIMGLLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLnstNINKLSSS 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1268890591 227 FTLTLdsTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFT 299
Cdd:MTH00070 234 WSKNP--TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTT 304
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
3-294 |
8.53e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 172.30 E-value: 8.53e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 3 MNPSKI-LFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVL----- 76
Cdd:MTH00135 1 MNPYVLtILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 77 -----IMHLMVMLPSIlenlipcLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPIN-TFT 150
Cdd:MTH00135 81 tgqwdIQQMSHPLPTT-------MITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNpTLL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 151 SLIIITSIIIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTClclMFYNFNIYYLTQCFTLT 230
Cdd:MTH00135 154 ITLGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSS---AFLTFKLNSSTKINTLA 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268890591 231 LDST----MKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFS 294
Cdd:MTH00135 231 TSWTkapaLTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-328 |
3.81e-47 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 162.26 E-value: 3.81e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 1 MMMNPSKILFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSvliMHL 80
Cdd:MTH00011 2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG---MTM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 81 MVMLPSILENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPIN--TFTSLIIITSI 158
Cdd:MTH00011 79 MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNilPMMTSMAAMSA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 159 IIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLT-LDSTMKF 237
Cdd:MTH00011 159 LAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISsMSQTTSM 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 238 SLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFTQMELKWTNTPMYSSLLNT 317
Cdd:MTH00011 239 SLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKIL 318
|
330
....*....|.
gi 1268890591 318 ILFILVNLGLS 328
Cdd:MTH00011 319 ISMCTLSLGLI 329
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-322 |
1.66e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 152.52 E-value: 1.66e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 9 LFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMhlmvMLPSIL 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS----FSNLYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 89 ENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFTSLIIITSIIIGSLGGLNQ 168
Cdd:MTH00197 78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 169 TSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQCFTLTLDSTMKFSLFLTLLSLGG 248
Cdd:MTH00197 158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1268890591 249 -LPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLFTQMELkwtNTPMYSSLLNTILFIL 322
Cdd:MTH00197 238 gLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMI---NFLMKINLLYSGLFIL 309
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-335 |
3.03e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 152.43 E-value: 3.03e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 9 LFLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLMVMLPSI- 87
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIs 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 88 --LENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPI--NTFTSLIIITSIIIGSL 163
Cdd:MTH00200 88 emLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPAlnSNILLLLGLLSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 164 GGLNQTSLRKIMSYSSINHMGWMIGGMMTGENTWMFYLLIYSLLTTCLCLMFYNFNIYYLTQC-FTLTLDSTMKFSLFLT 242
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLsSSKTKNPILSMLLGLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 243 LLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRLTFSSFLF-----TQMELKWTNTPMYSSLLNT 317
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTlspnqINMMSSWRTKSNSNLLVGL 327
|
330
....*....|....*....
gi 1268890591 318 -ILFILVNLGLSGLLLCTL 335
Cdd:MTH00200 328 lLLLSILGLPLTPQLLFLF 346
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
24-281 |
1.37e-26 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 106.63 E-value: 1.37e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 24 SDSWLGAWAGLEINLLSFIPLMT-NSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLM--------------VMLPSIL 88
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYtgtlsfdelskaltGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 89 ENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLIL-MTWQKIAPLMLL-------SYIIPINTFTSLIIITSIII 160
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 161 GSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGEN----TWMFYLLIYSLLTTCLCLMFYNF-----NIYYLTQCFTL-T 230
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLaK 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1268890591 231 LDSTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIAT 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-291 |
2.15e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 97.39 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 6 SKILFLMTLFsGTLVTICSDSWLGAWAGLEINLLS-FIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHLMVML 84
Cdd:MTH00199 99 SPILILIVAL-GSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 85 PSI-------LENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFTSLIIITS 157
Cdd:MTH00199 178 TSIqginsilTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLS 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 158 IIIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGEN----TWMFYLLIYSLLTTCLCLMFYNFNiyyLTQCFTLTL-- 231
Cdd:MTH00199 258 IIYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLK---LTKGLIVEVsg 334
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1268890591 232 ----DSTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:MTH00199 335 lsrkNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
17-291 |
7.23e-22 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 95.10 E-value: 7.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 17 GTLVTICSDSWLGAWAGLEINLLS-FIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSV----------------LIMH 79
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSlFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 LMVMLPSILENLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFTSLIIITSII 159
Cdd:MTH00196 85 SGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 160 IGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTGE----NTWMFYLLIYSLLTTCL--CLMFYNFNIYYLTQCFTLT-LD 232
Cdd:MTH00196 165 VGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVfsIILALNVYKNLIIEFSGLSrRL 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1268890591 233 STMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:MTH00196 245 PILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
8-291 |
1.30e-17 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 83.33 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 8 ILFLMTLFsGTLVTICSDSWLGAWAGLEI-NLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLI-------MH 79
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLlygatgsLS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 LMVMLPSILENLIP--------CLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIA---PLMLLSYIIPINT 148
Cdd:PRK05777 186 FAGIAKALADGSGNsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVAFGGL 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 149 FTSLIIITSIIIGS------LGGLNQTSLRKIMSYSSINHMGWMIGGMMT----GENTWMFYLLIYSLLT----TCLCLM 214
Cdd:PRK05777 266 SEDWQQVLAIIAIAsmlvgnLAALSQTNIKRLLAYSSIAHAGYLLVGLAAgtaeGYSAVLFYLLAYLFMTlgafGVISLL 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 215 ----FYNFNIY----------YLTQCFTLTLDStmkfslfltllsLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIA 280
Cdd:PRK05777 346 rrkgGEAESISdfaglskrspLLAAVMTIFMLS------------LAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLN 413
|
330
....*....|.
gi 1268890591 281 TLITVFFYLRL 291
Cdd:PRK05777 414 SAIGAFYYLRV 424
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-331 |
4.43e-15 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 75.75 E-value: 4.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 8 ILFLMTLFsGTLVTICSDSWLGAWAGLEINLLSFIPLMTNS-KNMMSTEASLKYFLIQAIASAIFLFSVLIMH------- 79
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKrKSRFSTEAGLKYFILGAFSSGLLLFGISLIYgftgsln 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 ---LMVMLPSILENLIPC-----LISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIA---PLMLLSYIIPINT 148
Cdd:TIGR01770 185 fedLLLFLSNGMLNISLLllgivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFGF 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 149 FTSLIIITSIIIGS------LGGLNQTSLRKIMSYSSINHMGWMI----GGMMTGENTWMFYLLIYSLLT----TCLCLM 214
Cdd:TIGR01770 265 SEAWQIFLAIIAFLsmlignFGALAQKKVKRLLAYSSISHVGYILigllAGTLEGIKAVLFYIFIYALMSlgafGVLSLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 215 F---YNFNIYYLTQCFTLTLDSTMKFSLFLTLLSLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:TIGR01770 345 RsykDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1268890591 292 TfSSFLFTQMELKWTNTPMYSSLLNTILFILVNLGLSGLL 331
Cdd:TIGR01770 425 V-KVMYFDKPERRIPSNPQSKAQSLLLSISALFILFLGLF 463
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
10-291 |
1.43e-14 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 74.38 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 10 FLMTLFS--GTLVTICSDSWLGAWAGLEINLLSFIPL-MTNSKNMMSTEASLKYFLIQAIASAIFLF----------SVL 76
Cdd:COG1007 105 YALLLFAtlGMMLMASANDLLTLFLGLELLSLSLYVLvAFRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 77 IMHLMVMLPSILENLIP-----CLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIA---PLMLLSYIIPINT 148
Cdd:COG1007 185 LAGIAAALAAGGANSPLlllglVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaALLRLLVEAFPGL 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 149 FTSLIIITSIIIGS------LGGLNQTSLRKIMSYSSINHMGWMIGGMMT----GENTWMFYLLIYSLLTT----CLCLM 214
Cdd:COG1007 265 AADWQLLLAVLAVLsmtvgnLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgtplGVSAALFYLLAYLFMNLgafaVILLL 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 215 ----FYNFNIY----------YLTQCFTLTLDStmkfslfltllsLGGLPPFLGFLPKWLIIQSLTNLNQWFTITIMVIA 280
Cdd:COG1007 345 srkgGEAEEIEdlaglarrspLLALAMTIFLLS------------LAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLN 412
|
330
....*....|.
gi 1268890591 281 TLITVFFYLRL 291
Cdd:COG1007 413 SVISAYYYLRV 423
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
17-310 |
1.44e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 59.10 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 17 GTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMST---------EASLKYFLIQAIASAIFLFSVLIM--------H 79
Cdd:MTH00198 200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYfgftgnegM 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 LMVMLPSILE---------NLIPCLISSSLFLKTGAAPFHFWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPINTFT 150
Cdd:MTH00198 280 LGTILSATLEttnielrqgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLL 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 151 SLIIITSIIIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMMTG-----ENTWMfYLLIYSLLT----TCLCLMFYNFNIY 221
Cdd:MTH00198 360 LSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWT-YAVTYLVSAlasfTVICTLEEFGTRT 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 222 --------------YLTQCFTLTLDSTMKFSLFLTLLSLGG----LPPFLGFLPKWLI------IQSLTNLNQWFTITIM 277
Cdd:MTH00198 439 ptsrqrdgsfgnynLVRRLVDLTILSRGQPYIAFSLAIVFLslagIPPLLGFLGKWFIlvgsikIAFSSSLSIYYLVALF 518
|
330 340 350
....*....|....*....|....*....|....
gi 1268890591 278 -VIATLITVFFYLRLTFSSFLFTQMELKWTNTPM 310
Cdd:MTH00198 519 aIICTCISAFYYIRIVATIYFNFTRPLIKTKTPL 552
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
10-291 |
1.75e-07 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 52.46 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 10 FLMTLFSGTLVTICSDSWLGAWAGLEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIM----------H 79
Cdd:COG0651 112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmaD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 80 LMVMLPSILENLIPC---LISSSLFLKTGAAPFHFWFPGVM-EGLTWINSLI--LMTwqKIAPLMLLSYIIPINTFTSLI 153
Cdd:COG0651 192 LAARLAELDPGLLLAafaLLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILRVLTLLFGADPAL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 154 IITSIIIGS---------LGGLNQTSLRKIMSYSSINHMGWMIGG--MMTGENTW--MFYLLIYSLLTTCLCLMFYNfnI 220
Cdd:COG0651 270 FLGTLLLVLglltmlvgaLGALAQRDLKRLLAYSSVSQIGYILLGlgLGTPLGLAgaLFHLLNHALAKALLFLAAGA--I 347
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268890591 221 YYLTQCFTLT----LDSTMKFSLFLTLLSLGG---LPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:COG0651 348 ERATGTRDLDklggLGKRMPLTAAAFLIGALAlagLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
53-204 |
1.28e-06 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 50.05 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 53 STEASLKYFLIQAIASAIFLFSVLIM--------HLMVMLPSILENLIPCLISSSLFL------KTGAAPFHFWFPGVME 118
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLyglsggstQLSAIALALITSPSLGLALALVFViagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 119 GLTWINSLILMTWQKIA----PLMLLSYIIPINT--FTSLIIITSIIIGSLG---GLNQTSLRKIMSYSSINHMGW-MIG 188
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDeqWKLLFTALAILSMVLGnvvALAQTSMKRMLAYSSIGQAGFvMIG 318
|
170
....*....|....*....
gi 1268890591 189 ---GMMTGENTWMFYLLIY 204
Cdd:PRK02504 319 lvaGTEAGYASMVFYLLAY 337
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-291 |
4.13e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 48.34 E-value: 4.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 34 LEINLLSFIPLMTNSKNMMSTEASLKYFLIQAIASAIFLFSVLIMHL------MVMLPSILENLIPC-----LISSSLFL 102
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGvtgtlnMADLAGALAENPTVvtafgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 103 KTGAAPFHFWFPGVMEGLTWINSLI---LMTWQKIAPLMLLSYIIPINTFTSLIIITSIIIGS---------LGGLNQTS 170
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALlsgLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLallsmlvgsLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 171 LRKIMSYSSINHMGWMIGGMMTGENTWM----FYLLIYSLLTTCLCL----MFYNFNIYYLTQcftltLDSTMKFSLFLT 242
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALaaglLHLLHHALMKGALFLaagaIEVTYGTRRLSE-----LSGLGRRMPLTA 369
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1268890591 243 LLSLGG------LPPFLGFLPKWLIIQSLTNLNQWFTITIMVIATLITVFFYLRL 291
Cdd:PRK08375 370 AAFAVAslsligVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRI 424
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
55-323 |
5.71e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 44.70 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 55 EASLKYFLIQAIASAIFLFSVLIM-------------HLMVMLPSILENLIPCLISSSLFLKTGAAPFHFWFP-GVMEGL 120
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLygqygtlnmaylaVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPdAYPAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 121 TWINSLILMTWQ----KIAPLMLLSYIIPINT-----FTSLIIITSIIIGSLGGLNQTSLRKIMSYSSINHMGWMIGGMM 191
Cdd:PRK08376 252 SSISAMLLVIKQaglyALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 192 TGENTWMFYLLIYSLLTTCLCLMFYNFN--------------IYYLTQCFTLT----LDSTMKFSLFLTL---LSLGGLP 250
Cdd:PRK08376 332 VGLAALGDPAMASYGEIALAGGIYHIVNhalykallfltagaVIYETGTRNLNelggLARTMPKTTIAFLigaAAIVGLP 411
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1268890591 251 PFLGFLPKWLIIQSLTNLNQWFTItIMVIATLITVFFYLRLTFSSFLFTQ----MELKWTNTPMYSSLLNTILFILV 323
Cdd:PRK08376 412 PFNGFASKWLIYESSALFNPILGV-IAMIGSVLTLASFVKVFHTAFFGPPsekvMNVKEPPKPMLVPMLILAIAIIG 487
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
48-204 |
1.77e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 43.07 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 48 SKNMMSTEASLKYFLIQAIASAIFL--FSVL--IMHLMVMLPSILENLI-------------PCLISSSLFLKTGAAPFH 110
Cdd:CHL00049 155 KKDVRSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIVNGLIntqmynspgisiaLIFITVGIGFKLSLAPFH 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1268890591 111 FWFPGVMEGLTWINSLILMTWQKIAPLMLLSYIIPI------NTFTSLIIITSIIIGSLGGL---NQTSLRKIMSYSSIN 181
Cdd:CHL00049 235 QWTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIpfyfssNEWHLLLEILAILSMILGNLiaiTQTSMKRMLAYSSIG 314
|
170 180
....*....|....*....|....*...
gi 1268890591 182 HMGWMIGGMMTGEN-----TWMFYLLIY 204
Cdd:CHL00049 315 QIGYVIIGIIVGDSndgyaSMITYMLFY 342
|
|
| |
