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Conserved domains on  [gi|1268843518|emb|SOK58794|]
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hypothetical protein [Yersinia phage fHe-Yen9-04]

Protein Classification

HNH endonuclease( domain architecture ID 10003646)

HNH endonuclease contains an HNH endonuclease signature motif and may catalyze the hydrolysis of DNA

Gene Ontology:  GO:0004519|GO:0003676|GO:0008270
PubMed:  28211904

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
35-102 8.89e-04

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


:

Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.89  E-value: 8.89e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268843518  35 AVMKRDGIKCHCCDndsvffevvannqmaafidKNGKKIRLTLDHDKLDSLGGHNVIKNFHVLCEECN 102
Cdd:COG1403    13 AVLKRDNGRCQYCG-------------------RPFSGDALEVDHIIPRSRGGTDTWENLVLLCRRCN 61
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
35-102 8.89e-04

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.89  E-value: 8.89e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268843518  35 AVMKRDGIKCHCCDndsvffevvannqmaafidKNGKKIRLTLDHDKLDSLGGHNVIKNFHVLCEECN 102
Cdd:COG1403    13 AVLKRDNGRCQYCG-------------------RPFSGDALEVDHIIPRSRGGTDTWENLVLLCRRCN 61
 
Name Accession Description Interval E-value
McrA COG1403
5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];
35-102 8.89e-04

5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms];


Pssm-ID: 441013 [Multi-domain]  Cd Length: 64  Bit Score: 36.89  E-value: 8.89e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1268843518  35 AVMKRDGIKCHCCDndsvffevvannqmaafidKNGKKIRLTLDHDKLDSLGGHNVIKNFHVLCEECN 102
Cdd:COG1403    13 AVLKRDNGRCQYCG-------------------RPFSGDALEVDHIIPRSRGGTDTWENLVLLCRRCN 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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