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Conserved domains on  [gi|126792908|gb|ABO27310|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Nannopsittaca dachilleae]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.21e-51

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 162.23  E-value: 2.21e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWGW---GGEFGVNTADSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVL 157
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792908 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.21e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 162.23  E-value: 2.21e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWGW---GGEFGVNTADSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVL 157
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792908 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-159 1.68e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   17 LLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSL-AADPFPQVW*GWRVVGYILGLV 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 126792908   96 LALSVgcVVWGWGGEFGVNTADSVGVFFVRLDFGGVALFYSlGGGLFLMAGWGLLLTLFVVLEL 159
Cdd:pfam00499  81 LLLAL--LLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 6-107 1.48e-04

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 40.10  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   6 LFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSL---AADPFPQVW 82
Cdd:COG0839    6 YIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLldlDKEELREGF 85

                         90       100
                 ....*....|....*....|....*
gi 126792908  83 *GWRVVGYILGLVLALSVGCVVWGW 107
Cdd:COG0839   86 RKYRPLAALVGLLLLAELAYVLLST 110
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-171 2.21e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 162.23  E-value: 2.21e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWGW---GGEFGVNTADSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVL 157
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGGlwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792908 158 ELVRGLSRGAIRAV 171
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-171 3.34e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 161.46  E-value: 3.34e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILG-LVLALSVGCVVWGWGGEFGVNTADSVGVFFV-RLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVLE 158
Cdd:MTH00138  81 SWGSWSVLGYVVGyLVGVVLAAGLFWGGWYEGSWVVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 126792908 159 LVRGLSRGAIRAV 171
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-171 1.20e-44

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 144.99  E-value: 1.20e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWG-WGGEFGVNTADSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVLEL 159
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGcNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 126792908 160 VRGLSRGAIRAV 171
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-162 2.14e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 101.03  E-value: 2.14e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWGWGGE-----FGVNTA------DSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGL 149
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDevevvFNFNGLgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 126792908 150 LLTLFVVLELVRG 162
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-171 4.97e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 94.67  E-value: 4.97e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   1 MAYFVLFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  81 VW*GWRVVGYILGLVLALSVGCVVWGWGGEFGVNTADSVgvfFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVLELV 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDE---ANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELV 157

                        170
                 ....*....|.
gi 126792908 161 RGLSRGAIRAV 171
Cdd:MTH00214 158 RGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 13-170 2.82e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 66.47  E-value: 2.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908  13 VLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPqvw*gwrVVGYIL 92
Cdd:MTH00045  11 LFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYP-------SVSNLG 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 126792908  93 GLVLALSVGCVVWGWGGEFGVNTADSVGVFFVRLDFGGVALFYSLGGGLFLMAGWGLLLTLFVVLELVRGLSRGAIRA 170
Cdd:MTH00045  84 EVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-159 1.68e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.97  E-value: 1.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   17 LLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSL-AADPFPQVW*GWRVVGYILGLV 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 126792908   96 LALSVgcVVWGWGGEFGVNTADSVGVFFVRLDFGGVALFYSlGGGLFLMAGWGLLLTLFVVLEL 159
Cdd:pfam00499  81 LLLAL--LLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 6-107 1.48e-04

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 40.10  E-value: 1.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792908   6 LFLGVGFVLAALLVASNPSPYYGVVGLVFGSVVGCGWFVSLGASFMSLVLFMVYLGGMLVVFVYSVSL---AADPFPQVW 82
Cdd:COG0839    6 YIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLldlDKEELREGF 85

                         90       100
                 ....*....|....*....|....*
gi 126792908  83 *GWRVVGYILGLVLALSVGCVVWGW 107
Cdd:COG0839   86 RKYRPLAALVGLLLLAELAYVLLST 110
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 2.32e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 36.71  E-value: 2.32e-03
                         10        20
                 ....*....|....*....|....*.
gi 126792908  49 SFMSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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