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Conserved domains on  [gi|126792906|gb|ABO27309|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Psittacara leucophthalmus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 4.20e-51

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 161.45  E-value: 4.20e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLGFVP----VGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLvvvvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792906 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 4.20e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 161.45  E-value: 4.20e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLGFVP----VGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLvvvvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792906 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-158 2.02e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.59  E-value: 2.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   17 LLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGWHAAGYVLGFVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126792906   97 VGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYScGAGMFLAAGWGLFLTLFVVLEL 158
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 1-106 2.12e-03

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 36.63  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSL----AAD 76
Cdd:COG0839    1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLldldKEE 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 126792906  77 PFPQAWGGWHAAGYVLGFVPVGMGFVIWGW 106
Cdd:COG0839   81 LREGFRKYRPLAALVGLLLLAELAYVLLST 110
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 4.20e-51

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 161.45  E-value: 4.20e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLGFVP----VGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLvvvvVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792906 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 1.63e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 157.22  E-value: 1.63e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLGF---VPVGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVLE 157
Cdd:MTH00138  81 SWGSWSVLGYVVGYlvgVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 126792906 158 LVRGLSRGVIRAV 170
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-170 1.63e-42

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 139.60  E-value: 1.63e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLG-FVPVGMGFVIWG-WG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVLEL 158
Cdd:MTH00065  81 AWGSWSVLVYVLFyLLLLIVGYILFGcNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 126792906 159 VRGLSRGVIRAV 170
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-161 1.50e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 98.72  E-value: 1.50e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGG-WHAAGYVLGFVPVGMGFVIW-----GWG*GFKVDSV------DSVGVLFARLDFSGAALFYSCGAGMFLAAGWGL 148
Cdd:MTH00109  82 TWVSnKVVLGALLLGLLMELLLVLYvlkddEVEVVFNFNGLgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 126792906 149 FLTLFVVLELVRG 161
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-170 9.67e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 88.51  E-value: 9.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  81 AWGGWHAAGYVLGFVpVGMGFVIWGWG*GFKVDSVDSVGVlFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVLELVR 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYL-LGLGFVGFYFYGGWEMLSWMGVDE-ANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 126792906 161 GLSRGVIRAV 170
Cdd:MTH00214 159 GLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 10-169 1.78e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 64.16  E-value: 1.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  10 ISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGgwhaAG 89
Cdd:MTH00045   8 ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSN----LG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906  90 YVLGFVPVGMGFVIwgWG*GFKVDSVDSVGVLFARLDFSGAALFYSCGAGMFLAAGWGLFLTLFVVLELVRGLSRGVIRA 169
Cdd:MTH00045  84 EVLVLSLLLSLWVF--ISFDNFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-158 2.02e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 55.59  E-value: 2.02e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   17 LLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGWHAAGYVLGFVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126792906   97 VGMGFVIWGWG*GFKVDSVDSVGVLFARLDFSGAALFYScGAGMFLAAGWGLFLTLFVVLEL 158
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
NuoJ COG0839
NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH: ...
 1-106 2.12e-03

NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 6 (chain J) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440601 [Multi-domain]  Cd Length: 162  Bit Score: 36.63  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792906   1 MTYFLVFLGISFVLAALLVATNPSPHYGVVGLVFGSIVGCGWLVSLGASFMSLVLFMVYLGGMLVVFVYSVSL----AAD 76
Cdd:COG0839    1 ETILFYIFAALAVASALGVVTSRNPVHAALYLVLTFLSVAGLYLLLGAEFLAAVQVIVYVGAVMVLFLFVVMLldldKEE 80

                         90       100       110
                 ....*....|....*....|....*....|
gi 126792906  77 PFPQAWGGWHAAGYVLGFVPVGMGFVIWGW 106
Cdd:COG0839   81 LREGFRKYRPLAALVGLLLLAELAYVLLST 110
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 49-74 3.44e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 36.32  E-value: 3.44e-03
                         10        20
                 ....*....|....*....|....*.
gi 126792906  49 SFMSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00166  46 FWFSYILFLIFLGGMLVLFIYITSLA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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