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Conserved domains on  [gi|126792888|gb|ABO27299|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Anodorhynchus hyacinthinus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 1.71e-49

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 157.22  E-value: 1.71e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVPAGVGLVVWGW----GGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGglwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792888 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 1.71e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 157.22  E-value: 1.71e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVPAGVGLVVWGW----GGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGglwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792888 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-158 2.28e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 2.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   17 LLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGWHVMGYVLGFVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126792888   97 AGVGLVVWGWGGGFKVDTVDSVGVLFARLDFSGVALFYScGAGVFLMAGWGLLLTLFVVLEL 158
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-170 1.71e-49

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 157.22  E-value: 1.71e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVPAGVGLVVWGW----GGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVL 156
Cdd:MTH00115  81 AWGDWGVVGYVVGFVLVVVVVGVVVGglwgMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 126792888 157 ELVRGLSRGVIRAV 170
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-170 1.26e-47

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 152.60  E-value: 1.26e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVPAGVGLVVWGWGGGFKVD--TVDSVGVLFA-RLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVLE 157
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSwvVVDELKEFSVlRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 126792888 158 LVRGLSRGVIRAV 170
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-170 6.31e-43

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 140.37  E-value: 6.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLG--FVPAGVGLVVWGWGGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVLEL 158
Cdd:MTH00065  81 AWGSWSVLVYVLFylLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 126792888 159 VRGLSRGVIRAV 170
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-161 1.57e-25

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 96.02  E-value: 1.57e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWG------GWHVMGYVLGFVPAGVGLVVWGWGGGFKVDTV------DSVGVLFARLDFSGVALFYSCGAGVFLMAGWGL 148
Cdd:MTH00109  82 TWVsnkvvlGALLLGLLMELLLVLYVLKDDEVEVVFNFNGLgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 126792888 149 LLTLFVVLELVRG 161
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-170 3.07e-22

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 87.35  E-value: 3.07e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVpaGVGLVVWGWGGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVLELVR 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYL--LGLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 126792888 161 GLSRGVIRAV 170
Cdd:MTH00214 159 GLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-169 6.59e-13

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 63.00  E-value: 6.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   1 MIYFLVFlgISFVLASLLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQ 80
Cdd:MTH00045   1 MVFYLFL--ILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888  81 AWGGWHVMGYVLGFVpagvglVVWGWGGGFKVDTVDSVGVLFARLDFSGVALFYSCGAGVFLMAGWGLLLTLFVVLELVR 160
Cdd:MTH00045  79 VSNLGEVLVLSLLLS------LWVFISFDNFLELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVISF 152


                 ....*....
gi 126792888 161 GLSRGVIRA 169
Cdd:MTH00045 153 GHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-158 2.28e-08

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 50.19  E-value: 2.28e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126792888   17 LLVASNPSPHYGVVGLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLAADPFPQAWGGWHVMGYVLGFVP 96
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126792888   97 AGVGLVVWGWGGGFKVDTVDSVGVLFARLDFSGVALFYScGAGVFLMAGWGLLLTLFVVLEL 158
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAIGELLFTD-YLLPFELASVLLLVALVGAIVL 141
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-74 8.85e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 34.86  E-value: 8.85e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 126792888   1 MIYFLVFLGISFVLASLLVASNPSphYGVVgLIFGSVVGCGWLASLGASFVSLVLFMVYLGGMLVVFVYSVSLA 74
Cdd:MTH00152   2 SLMILLSVCFSLFLLLPLSKQPLS--LGLV-LLLLSLFVCVEIGLTLSSWYGYLLFLVYVGGLLVMFAYVVSLS 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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