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Conserved domains on  [gi|12657871|ref|NP_075284|]
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tail completion or Neck1 protein [Mycobacterium phage Bxb1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5403 super family cl38676
Family of unknown function (DUF5403); This is a family of unknown function found in ...
 6-112 1.85e-09

Family of unknown function (DUF5403); This is a family of unknown function found in Actinobacteria.


The actual alignment was detected with superfamily member pfam17395:

Pssm-ID: 407472  Cd Length: 96  Bit Score: 51.03  E-value: 1.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12657871     6 GRSGLNKVVSHLPGVVHEMRSEADEVADRAKANLAAARAsTQWEKIHgpdhltkITRTNGSVDAYVNMEAPSPESIEYGH 85
Cdd:pfam17395   3 GQKALDQVVAHLPGVRDAVAEEAERRAARVRAVAAGHRD-TGALAAH-------IEVTHGRVDSFVVLEDPAALAIEFGH 74

                          90       100
                  ....*....|....*....|....*..
gi 12657871    86 YPsgvfdPEKYGRVTKAPQGLYILTGA 112
Cdd:pfam17395  75 WA-----RNGRGPKLRWVPGIHAIEAA 96
 
Name Accession Description Interval E-value
DUF5403 pfam17395
Family of unknown function (DUF5403); This is a family of unknown function found in ...
 6-112 1.85e-09

Family of unknown function (DUF5403); This is a family of unknown function found in Actinobacteria.


Pssm-ID: 407472  Cd Length: 96  Bit Score: 51.03  E-value: 1.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12657871     6 GRSGLNKVVSHLPGVVHEMRSEADEVADRAKANLAAARAsTQWEKIHgpdhltkITRTNGSVDAYVNMEAPSPESIEYGH 85
Cdd:pfam17395   3 GQKALDQVVAHLPGVRDAVAEEAERRAARVRAVAAGHRD-TGALAAH-------IEVTHGRVDSFVVLEDPAALAIEFGH 74

                          90       100
                  ....*....|....*....|....*..
gi 12657871    86 YPsgvfdPEKYGRVTKAPQGLYILTGA 112
Cdd:pfam17395  75 WA-----RNGRGPKLRWVPGIHAIEAA 96
 
Name Accession Description Interval E-value
DUF5403 pfam17395
Family of unknown function (DUF5403); This is a family of unknown function found in ...
 6-112 1.85e-09

Family of unknown function (DUF5403); This is a family of unknown function found in Actinobacteria.


Pssm-ID: 407472  Cd Length: 96  Bit Score: 51.03  E-value: 1.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12657871     6 GRSGLNKVVSHLPGVVHEMRSEADEVADRAKANLAAARAsTQWEKIHgpdhltkITRTNGSVDAYVNMEAPSPESIEYGH 85
Cdd:pfam17395   3 GQKALDQVVAHLPGVRDAVAEEAERRAARVRAVAAGHRD-TGALAAH-------IEVTHGRVDSFVVLEDPAALAIEFGH 74

                          90       100
                  ....*....|....*....|....*..
gi 12657871    86 YPsgvfdPEKYGRVTKAPQGLYILTGA 112
Cdd:pfam17395  75 WA-----RNGRGPKLRWVPGIHAIEAA 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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