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Conserved domains on  [gi|12654455|gb|AAH01055|]
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Claudin 7 [Homo sapiens]

Protein Classification

PMP-22/EMP/MP20 family protein( domain architecture ID 10467089)

PMP-22/EMP/MP20 family tetraspan membrane protein similar to human claudin-9 (hCLDN-9) which is highly expressed in the inner ear, essential for hearing and a high-affinity receptor of CpE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PMP22_Claudin pfam00822
PMP-22/EMP/MP20/Claudin family;
4-182 4.63e-54

PMP-22/EMP/MP20/Claudin family;


:

Pssm-ID: 395662  Cd Length: 162  Bit Score: 170.24  E-value: 4.63e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455     4 SGLQLLGFSMALLGWVGLVACTAIP-QWQMSSYAGdniitaQAMYKGLWMDCVTQS-TGMMSCKMydsvLALSAALQATR 81
Cdd:pfam00822   1 MLVLLLGFIVSHIAWVILLFVATIPdQWKVSRYVG------AAASAGLWRNCTTQScTGQISCKV----LELNDALQAVQ 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455    82 ALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVkkariamgGGIIFIVAGLATLVACSWYGHQIVTDFYNPLIPtNIKYEF 161
Cdd:pfam00822  71 ALMILSIILGIISLIVFFFQLFTMRKGGRFKL--------AGIIFLVSGLCVLVGASIYTSRIATDFGNPFTP-NRKYSF 141

                         170       180
                  ....*....|....*....|.
gi 12654455   162 GPAIFIGWAGSALVILGGALL 182
Cdd:pfam00822 142 GYSFILGWVAFALAFIGGVLY 162
 
Name Accession Description Interval E-value
PMP22_Claudin pfam00822
PMP-22/EMP/MP20/Claudin family;
4-182 4.63e-54

PMP-22/EMP/MP20/Claudin family;


Pssm-ID: 395662  Cd Length: 162  Bit Score: 170.24  E-value: 4.63e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455     4 SGLQLLGFSMALLGWVGLVACTAIP-QWQMSSYAGdniitaQAMYKGLWMDCVTQS-TGMMSCKMydsvLALSAALQATR 81
Cdd:pfam00822   1 MLVLLLGFIVSHIAWVILLFVATIPdQWKVSRYVG------AAASAGLWRNCTTQScTGQISCKV----LELNDALQAVQ 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455    82 ALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVkkariamgGGIIFIVAGLATLVACSWYGHQIVTDFYNPLIPtNIKYEF 161
Cdd:pfam00822  71 ALMILSIILGIISLIVFFFQLFTMRKGGRFKL--------AGIIFLVSGLCVLVGASIYTSRIATDFGNPFTP-NRKYSF 141

                         170       180
                  ....*....|....*....|.
gi 12654455   162 GPAIFIGWAGSALVILGGALL 182
Cdd:pfam00822 142 GYSFILGWVAFALAFIGGVLY 162
 
Name Accession Description Interval E-value
PMP22_Claudin pfam00822
PMP-22/EMP/MP20/Claudin family;
4-182 4.63e-54

PMP-22/EMP/MP20/Claudin family;


Pssm-ID: 395662  Cd Length: 162  Bit Score: 170.24  E-value: 4.63e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455     4 SGLQLLGFSMALLGWVGLVACTAIP-QWQMSSYAGdniitaQAMYKGLWMDCVTQS-TGMMSCKMydsvLALSAALQATR 81
Cdd:pfam00822   1 MLVLLLGFIVSHIAWVILLFVATIPdQWKVSRYVG------AAASAGLWRNCTTQScTGQISCKV----LELNDALQAVQ 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455    82 ALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVkkariamgGGIIFIVAGLATLVACSWYGHQIVTDFYNPLIPtNIKYEF 161
Cdd:pfam00822  71 ALMILSIILGIISLIVFFFQLFTMRKGGRFKL--------AGIIFLVSGLCVLVGASIYTSRIATDFGNPFTP-NRKYSF 141

                         170       180
                  ....*....|....*....|.
gi 12654455   162 GPAIFIGWAGSALVILGGALL 182
Cdd:pfam00822 142 GYSFILGWVAFALAFIGGVLY 162
Claudin_2 pfam13903
PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight ...
 15-183 3.46e-05

PMP-22/EMP/MP20/Claudin tight junction; Members of this family are claudins, that form tight junctions between cells.


Pssm-ID: 372799 [Multi-domain]  Cd Length: 191  Bit Score: 42.79  E-value: 3.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455    15 LLGWVGLVACTAIPQWQMSSYA--GDNIITAQAMYKGLWMDC-----------------VTQSTGMMSCKMYD-----SV 70
Cdd:pfam13903   1 ILAFALLLIAFATDYWLVLDVAltGINNYTCLFAHLGLWRHCfksevdvdsdnqtrffgCLNQVPNPFPTFEEeivsfSV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12654455    71 LALSAALQATRALMVVSLVLGFLAMFVATMGMKCTrcggddkvkKARIAMGGGIIFIVAGLATLVACSWY---GHQIVTD 147
Cdd:pfam13903  81 TSLPGLTRFVQAFAILSLVLIVCGVVCGLLALPKQ---------SVFLLLAAGILFLLSGVLGLLGVIVFgqsVKLVFEE 151

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 12654455   148 FYNPLIPT---NIKYEFGPAIFIGWAGSALVILGGALLS 183
Cdd:pfam13903 152 YFRQWMPEhqnNVRISFGWSFALAWAGVVLSLLAGLLFL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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