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Conserved domains on  [gi|126362983|ref|NP_057136|]
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RRP15-like protein [Homo sapiens]

Protein Classification

RRP15 family protein( domain architecture ID 10545890)

RRP15 family protein such as Saccharomyces cerevisiae ribosomal RNA-processing protein 15, a component of pre-ribosomal particles required for 60S ribosome subunit maturation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 102-215 1.54e-27

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


:

Pssm-ID: 462305  Cd Length: 126  Bit Score: 103.12  E-value: 1.54e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126362983  102 KKTPESKPT--ILVKNKKLEKEKEKLKQERLEKI---KQRDKRLEWEMMCRVKpDVVQDK-----ETERNLQRIATRGVV 171
Cdd:pfam07890   1 SKLPASKRKdpILSRSKKAAKKLKKLEDEKLEAKakkALRAEKKEAEEKGRVK-DVLDGWteetaERERRLRKVATRGVV 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 126362983  172 QLFNAVQKHQKNVDEKVKEAGSS---MRKRAKLISTVSKKDFISVLR 215
Cdd:pfam07890  80 KLFNAVRAAQVKAEKALKEAGKLegvQKKKEKVLKELSKEKFLDLLK 126
 
Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 102-215 1.54e-27

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


Pssm-ID: 462305  Cd Length: 126  Bit Score: 103.12  E-value: 1.54e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126362983  102 KKTPESKPT--ILVKNKKLEKEKEKLKQERLEKI---KQRDKRLEWEMMCRVKpDVVQDK-----ETERNLQRIATRGVV 171
Cdd:pfam07890   1 SKLPASKRKdpILSRSKKAAKKLKKLEDEKLEAKakkALRAEKKEAEEKGRVK-DVLDGWteetaERERRLRKVATRGVV 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 126362983  172 QLFNAVQKHQKNVDEKVKEAGSS---MRKRAKLISTVSKKDFISVLR 215
Cdd:pfam07890  80 KLFNAVRAAQVKAEKALKEAGKLegvQKKKEKVLKELSKEKFLDLLK 126
 
Name Accession Description Interval E-value
Rrp15p pfam07890
Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.
 102-215 1.54e-27

Rrp15p; Rrp15p is required for the formation of 60S ribosomal subunits.


Pssm-ID: 462305  Cd Length: 126  Bit Score: 103.12  E-value: 1.54e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126362983  102 KKTPESKPT--ILVKNKKLEKEKEKLKQERLEKI---KQRDKRLEWEMMCRVKpDVVQDK-----ETERNLQRIATRGVV 171
Cdd:pfam07890   1 SKLPASKRKdpILSRSKKAAKKLKKLEDEKLEAKakkALRAEKKEAEEKGRVK-DVLDGWteetaERERRLRKVATRGVV 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 126362983  172 QLFNAVQKHQKNVDEKVKEAGSS---MRKRAKLISTVSKKDFISVLR 215
Cdd:pfam07890  80 KLFNAVRAAQVKAEKALKEAGKLegvQKKKEKVLKELSKEKFLDLLK 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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