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Conserved domains on  [gi|126031731]
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Chain D, SPCC1919.03c protein

Protein Classification

AMPKBI domain-containing protein( domain architecture ID 10659796)

AMPKBI domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-93 6.17e-29

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


:

Pssm-ID: 214973  Cd Length: 100  Bit Score: 99.70  E-value: 6.17e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126031731     2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHL----EKCILN-SNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLAL 76
Cdd:smart01010   2 SPPESYTNEIPACFTDDDFIEESPEEKWKEPPALpphlEKVILNtSSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAV 81

                           90
                   ....*....|....*..
gi 126031731    77 SATTRYHRKYVTTAMFK 93
Cdd:smart01010  82 AATTRYRGKYVTQVLYK 98
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-93 6.17e-29

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 99.70  E-value: 6.17e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126031731     2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHL----EKCILN-SNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLAL 76
Cdd:smart01010   2 SPPESYTNEIPACFTDDDFIEESPEEKWKEPPALpphlEKVILNtSSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAV 81

                           90
                   ....*....|....*..
gi 126031731    77 SATTRYHRKYVTTAMFK 93
Cdd:smart01010  82 AATTRYRGKYVTQVLYK 98
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 36-93 4.90e-23

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 83.74  E-value: 4.90e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 126031731  36 EKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFK 93
Cdd:pfam04739 12 HLTILNKPSSSSDDPSLLPRPNHVVLNHLYTSSIKDGVLALGTTHRYKSKYVTTVLYK 69
 
Name Accession Description Interval E-value
AMPKBI smart01010
5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the ...
 2-93 6.17e-29

5'-AMP-activated protein kinase beta subunit, interation domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain is sometimes found in proteins belonging to this family.


Pssm-ID: 214973  Cd Length: 100  Bit Score: 99.70  E-value: 6.17e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126031731     2 SESEQYSTEIPAFLTSNTLQELKLPKPPSLPPHL----EKCILN-SNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLAL 76
Cdd:smart01010   2 SPPESYTNEIPACFTDDDFIEESPEEKWKEPPALpphlEKVILNtSSTATREDPSLLPIPNHVVLNHLYTSSIKDGVLAV 81

                           90
                   ....*....|....*..
gi 126031731    77 SATTRYHRKYVTTAMFK 93
Cdd:smart01010  82 AATTRYRGKYVTQVLYK 98
AMPKBI pfam04739
5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the ...
 36-93 4.90e-23

5'-AMP-activated protein kinase beta subunit, interaction domain; This region is found in the beta subunit of the 5'-AMP-activated protein kinase complex, and its yeast homologs Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known. The isoamylase N-terminal domain (pfam02922) is sometimes found in proteins belonging to this family.


Pssm-ID: 461416  Cd Length: 70  Bit Score: 83.74  E-value: 4.90e-23
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 126031731  36 EKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFK 93
Cdd:pfam04739 12 HLTILNKPSSSSDDPSLLPRPNHVVLNHLYTSSIKDGVLALGTTHRYKSKYVTTVLYK 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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