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Conserved domains on  [gi|126012562|ref|NP_002323|]
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prolow-density lipoprotein receptor-related protein 1 preproprotein [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
4013-4054 7.13e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 7.13e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  4013 GTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY 4054
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3094-3136 3.04e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.77  E-value: 3.04e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3094 QVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYR 3136
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1959-1999 4.19e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.39  E-value: 4.19e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1959 VVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFR 1999
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3182-3223 1.23e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 61.85  E-value: 1.23e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   3182 VIVDTKITWPNGLTLDYVTERIYWADAREDYIEFASLDGSNR 3223
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3955-3992 3.81e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 3.81e-11
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 126012562   3955 SGLKMPRGIAIDWVAGNVYWTDSGRDVIEVAQMKGENR 3992
Cdd:smart00135    6 SGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
4037-4078 4.46e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.31  E-value: 4.46e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   4037 ETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIGSIRLNGTD 4078
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3575-3609 6.47e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 6.47e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3575 CSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDC 3609
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3536-3570 1.86e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.86e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3536 CEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESC 3570
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1336-1376 3.15e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 3.15e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1336 EVVIQYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGT 1376
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2344-2386 3.49e-10

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 57.94  E-value: 3.49e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 126012562  2344 NLMFWTNWNeQHPSIMRAALSGANVLTLIEKDIRTPNGLAIDH 2386
Cdd:pfam00058    1 GRLYWTDSS-LRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
640-689 4.06e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.61  E-value: 4.06e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 126012562    640 KTLIEGKMTHPRAIVVDPLNGWMYWTDWeedpkdsRRGRLERAWMDGSHR 689
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-------GLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2370-2411 6.00e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 6.00e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   2370 TLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHR 2411
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2045-2087 8.13e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 8.13e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   2045 VLVNVSISWPNGISVDYQDGKLYWCDARTDKIERIDLeTGENR 2087
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL-DGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3613-3647 8.38e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.45  E-value: 8.38e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3613 CDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC 3647
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
807-842 9.65e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 56.48  E-value: 9.65e-10
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562   807 CRVNNGGCSSLCLATPGSRQCACAEDQVLDADGVTC 842
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3493-3526 1.00e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.00e-09
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3493 TCGVDEFRCKDsGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:smart00192    1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1380-1423 1.05e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.46  E-value: 1.05e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1380 TLLAGDIEHPRAIALDPRDGILFWTDWdaSLPRIEAASMSGAGR 1423
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3138-3180 1.58e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.07  E-value: 1.58e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3138 VLVSSGLREPRALVVDVQNGYLYWTDWGDHSlIGRIGMDGSSR 3180
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDV-IEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1015-1048 1.60e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.60e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 1048
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
853-885 1.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    853 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 885
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2734-2765 1.98e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.98e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDE 2765
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2020-2061 2.11e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


:

Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.63  E-value: 2.11e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  2020 GYLFWTEWGQYPRIERSRLDGTERVVLVNVSISWPNGISVDY 2061
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
978-1011 2.39e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 2.39e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  978 PLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 1011
Cdd:cd00112     2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
935-967 2.58e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.58e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    935 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Vgb super family cl26743
Streptogramin lyase [Defense mechanisms];
1310-1503 3.10e-09

Streptogramin lyase [Defense mechanisms];


The actual alignment was detected with superfamily member COG4257:

Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 61.19  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1310 ALYWTDVVEDKIYRgklLD--NGALTSFEVViqyGLATPEGLAVDwIAGNIYWVESNLDQIevAKLD---GTLRTTLLAG 1384
Cdd:COG4257    29 AVWFTDQGGGRIGR---LDpaTGEFTEYPLG---GGSGPHGIAVD-PDGNLWFTDNGNNRI--GRIDpktGEITTFALPG 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1385 DIEHPRAIALDPRDGILFWTDWDASLPRIEAASmsgaGRRTVHRETGSGGWPNGLTVDylEKRILWI-DARSDAIysARY 1463
Cdd:COG4257   100 GGSNPHGIAFDPDGNLWFTDQGGNRIGRLDPAT----GEVTEFPLPTGGAGPYGIAVD--PDGNLWVtDFGANAI--GRI 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 126012562 1464 D-GSGHMEVLRGHEFLSHPFAVTLYG-GEVYWTDWRTNTLAK 1503
Cdd:COG4257   172 DpDTGTLTEYALPTPGAGPRGLAVDPdGNLWVADTGSGRIGR 213
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2817-2849 4.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 4.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2817 TCDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3653-3685 7.22e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.79  E-value: 7.22e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3653 TCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDE 3685
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2696-2730 7.49e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.75  E-value: 7.49e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2696 CPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3294-3330 1.24e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 53.40  E-value: 1.24e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3294 CKVNNGGCSNLCLLSPGGgHKCACPTNFYLGSDGRTC 3330
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3452-3485 1.83e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.83e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3452 TCAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDE 3485
Cdd:smart00192    1 TCPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
361-401 1.92e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 52.99  E-value: 1.92e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562    361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGR 401
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1062-1097 2.01e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDEKSC 1097
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1185-1221 2.12e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 2.12e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1185 CSLNNGGCSHNCSVAPGeGIVCSCPLGMELGPDNHTC 1221
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
895-928 2.26e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  895 CPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESN 928
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3374-3408 2.65e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.65e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3374 CRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANC 3408
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
3862-4064 6.74e-08

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 56.63  E-value: 6.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3862 AEGSEYQVLYIADDNEIRSLFPGHPHSAYEQAFQGDESVRIDAMDVHVKAGRVYWTNWHTGTISyrslppaAPPTTSNRH 3941
Cdd:COG3391    30 LGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVS-------VIDLATGKV 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3942 RRQIDRGvthlnisglKMPRGIAIDWVAGNVYWTDSGRD-VIEVAQMKGENRKTLISGmiDEPHAIVVDPLRGTMYWSDW 4020
Cdd:COG3391   103 VATIPVG---------GGPRGLAVDPDGGRLYVADSGNGrVSVIDTATGKVVATIPVG--AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 126012562 4021 GNHP------KIETAamDGTLRETLvqDNIQWPTGLAVDYHNERLYWADA 4064
Cdd:COG3391   172 GSNTvsvivsVIDTA--TGKVVATI--PVGGGPVGVAVSPDGRRLYVANR 217
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2857-2890 7.85e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.85e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2857 TCGPSEFRCANGRCLSsRQWECDGENDCHDQSDE 2890
Cdd:smart00192    1 TCPPGEFQCDNGRCIP-SSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 7.93e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.93e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192    1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3334-3365 9.54e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 9.54e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 3334 CTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
594-633 1.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    594 ETILKDGIHNVEGVAVDWMGDNLYWTDDGpKKTISVARLE 633
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLD 39
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3413-3448 1.47e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 3413 CLPSQFKCTNtNRCIPGIFRCNGQDNCGDGEDERDC 3448
Cdd:cd00112     1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1650-1693 1.91e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 1.91e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1650 ETVVSADLPNAHGLAVDWVSRNLFWTsyDTNKKQINVARLDGSF 1693
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWT--DWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3746-3776 1.95e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.90  E-value: 1.95e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDEEDC 3776
Cdd:cd00112     5 EFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2605-2639 2.30e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.30e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2605 CGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNC 2639
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1104-1140 2.94e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.94e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDEENC 1140
Cdd:cd00112     1 CPPN-EFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
316-358 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    316 TLLDLELYNPKGIALDPAMGKVFFTDYGQiPKVERCDMDGQNR 358
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
700-733 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562    700 WPNGLSLDIPAGRLYWVDAFYDRIETILLNGTDR 733
Cdd:smart00135   10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1734-1775 3.66e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.66e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   1734 RTLLFSGQKGPVGLAIDFPESKLYWISSGNHTINRCNLDGSG 1775
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1697-1734 3.92e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.92e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562   1697 VVQGLEQPHGLVVHPLRGKLYWTD--GDNISMANMDGSNR 1734
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDwgLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3049-3093 6.33e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 6.33e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 126012562   3049 YTLLKQGLNNAVALDFDYREQMIYWTDVTTQgsMIRRMHLNGSNV 3093
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD--VIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2907-2939 1.04e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.04e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDERGC 2939
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2566-2600 1.97e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.82  E-value: 1.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2566 CKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPC 2600
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2773-2806 1.07e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


:

Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 1.07e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2773 TCGPSSFSCPGTHvCVPERWLCDGDKDCADGADE 2806
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
158-188 1.87e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.16  E-value: 1.87e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562   158 GTCSQLCTNTDGSFICGCVEGYLLQPDNRSC 188
Cdd:pfam14670    6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
275-314 2.63e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 44.13  E-value: 2.63e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    275 ISLSLHHVEQMAIDWLTGNFYFVDDIDDRIFVCNRNGDTC 314
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1872-2084 2.71e-05

DNA-binding beta-propeller fold protein YncE [General function prediction only];


:

Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 48.92  E-value: 2.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1872 MCTAGYSLRSGQQACEGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAEND--TIYWVDMGLSTISRA 1949
Cdd:COG3391    16 LALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADgrRLYVANSGSGRVSVI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1950 KRDQTWREDVVTNGiGRVEGIAVDWIAGNIYWTDQGFDviEVARLNGSFRYVV--ISQGlDKPRAITVHPEKGYLFWTEW 2027
Cdd:COG3391    96 DLATGKVVATIPVG-GGPRGLAVDPDGGRLYVADSGNG--RVSVIDTATGKVVatIPVG-AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 126012562 2028 GQyPRIER--SRLDGTERVVLVNVSI-SWPNGISVDYQDGKLYWCDART-------DKIERIDLETG 2084
Cdd:COG3391   172 GS-NTVSVivSVIDTATGKVVATIPVgGGPVGVAVSPDGRRLYVANRGSntsnggsNTVSVIDLATL 237
EGF_CA smart00179
Calcium-binding EGF-like domain;
2982-3011 3.31e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.77  E-value: 3.31e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2982 DVDECSTTFPCSQ--RCINTHGSYKCLCVEGY 3011
Cdd:smart00179    1 DIDECASGNPCQNggTCVNTVGSYRCECPPGY 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1145-1178 3.62e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.35  E-value: 3.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1145 CRPPSHPCANNTsvCLPPDKLCDGNDDCGDGSDE 1178
Cdd:cd00112     1 CPPNEFRCANGR--CIPSSWVCDGEDDCGDGSDE 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3224-3264 4.30e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 43.36  E-value: 4.30e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3224 HVVLSQDIPHI--FALTLFEDYVYWTDWETKSINRAhKTTGTN 3264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVA-NLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2527-2557 5.26e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.96  E-value: 5.26e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 2527 QDEFECANGECINFSLTCDGVPHCKDKSDEK 2557
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
551-593 5.44e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.97  E-value: 5.44e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    551 HMIPIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTER 593
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2159-2194 8.56e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 42.23  E-value: 8.56e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2159 CAVANGGCQQLCLYRGRGqRACACAHG-MLAEDGASC 2194
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGyELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
71-104 9.70e-05

Low-density lipoprotein receptor domain class A;


:

Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.24  E-value: 9.70e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057    2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1613-1649 1.23e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


:

Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.20  E-value: 1.23e-04
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 126012562   1613 DIDNVTVLDYDAREQRVYWSDVRTQAIKRAFINGTGV 1649
Cdd:smart00135    7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3695-3731 3.14e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 3695 CPPNRpFRCKNDRvCLWIGRQCDGTDNCGDGTDEEDC 3731
Cdd:cd00112     1 CPPNE-FRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1850-1886 3.59e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 3.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1850 CSVNNGDCSQLCLPTSEtTRSCMCTAGYSLRSGQQAC 1886
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2482-2517 7.58e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.92  E-value: 7.58e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2482 CRINNGGCQDLCLLTHQGHVnCSCRGGRILQDD-LTC 2517
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYT-CSCPEGYELQDDgRTC 36
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
2964-2985 1.12e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


:

Pssm-ID: 463661  Cd Length: 22  Bit Score: 38.93  E-value: 1.12e-03
                           10        20
                   ....*....|....*....|..
gi 126012562  2964 KCRCRPGFRLKDDGRTCADVDE 2985
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2666-2688 1.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.73  E-value: 1.47e-03
                          10        20
                  ....*....|....*....|...
gi 126012562 2666 CYAPSWVCDGANDCGDYSDERDC 2688
Cdd:cd00112    13 CIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 2.15e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 38.38  E-value: 2.15e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 126012562   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
486-519 4.07e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


:

Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.61  E-value: 4.07e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   486 PGGCSDICLlaNSHKARTCRCRSGFSLGSDGKSC 519
Cdd:pfam14670    5 NGGCSHLCL--NTPGGYTCSCPEGYELQDDGRTC 36
 
Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
4013-4054 7.13e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 7.13e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  4013 GTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY 4054
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3094-3136 3.04e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.77  E-value: 3.04e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3094 QVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYR 3136
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1959-1999 4.19e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.39  E-value: 4.19e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1959 VVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFR 1999
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3182-3223 1.23e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 61.85  E-value: 1.23e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   3182 VIVDTKITWPNGLTLDYVTERIYWADAREDYIEFASLDGSNR 3223
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3955-3992 3.81e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 3.81e-11
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 126012562   3955 SGLKMPRGIAIDWVAGNVYWTDSGRDVIEVAQMKGENR 3992
Cdd:smart00135    6 SGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
4037-4078 4.46e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.31  E-value: 4.46e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   4037 ETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIGSIRLNGTD 4078
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3575-3609 6.47e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 6.47e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3575 CSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDC 3609
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3573-3609 1.28e-10

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 58.80  E-value: 1.28e-10
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3573 RPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDC 3609
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3536-3570 1.86e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.86e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3536 CEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESC 3570
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1336-1376 3.15e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 3.15e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1336 EVVIQYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGT 1376
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2344-2386 3.49e-10

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 57.94  E-value: 3.49e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 126012562  2344 NLMFWTNWNeQHPSIMRAALSGANVLTLIEKDIRTPNGLAIDH 2386
Cdd:pfam00058    1 GRLYWTDSS-LRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
640-689 4.06e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.61  E-value: 4.06e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 126012562    640 KTLIEGKMTHPRAIVVDPLNGWMYWTDWeedpkdsRRGRLERAWMDGSHR 689
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-------GLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2370-2411 6.00e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 6.00e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   2370 TLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHR 2411
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2045-2087 8.13e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 8.13e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   2045 VLVNVSISWPNGISVDYQDGKLYWCDARTDKIERIDLeTGENR 2087
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL-DGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3613-3647 8.38e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.45  E-value: 8.38e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3613 CDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC 3647
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
807-842 9.65e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 56.48  E-value: 9.65e-10
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562   807 CRVNNGGCSSLCLATPGSRQCACAEDQVLDADGVTC 842
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3493-3526 1.00e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.00e-09
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3493 TCGVDEFRCKDsGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:smart00192    1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1380-1423 1.05e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.46  E-value: 1.05e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1380 TLLAGDIEHPRAIALDPRDGILFWTDWdaSLPRIEAASMSGAGR 1423
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3612-3644 1.10e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.10e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3612 RCDMDQFQCKSGHCIPLRWRCDADADCMDGSDE 3644
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3535-3567 1.54e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.72  E-value: 1.54e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3535 TCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDE 3567
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3138-3180 1.58e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.07  E-value: 1.58e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3138 VLVSSGLREPRALVVDVQNGYLYWTDWGDHSlIGRIGMDGSSR 3180
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDV-IEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1015-1048 1.60e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.60e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 1048
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3494-3526 1.65e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.65e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 3494 CGVDEFRCKDsGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:cd00112     1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDE 32
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
853-885 1.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    853 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 885
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1015-1046 1.97e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.97e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 1046
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2734-2765 1.98e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.98e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDE 2765
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3157-3198 2.07e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.63  E-value: 2.07e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3157 GYLYWTDWGDHSLIGRIGMDGSSRSVIVDTKITWPNGLTLDY 3198
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2020-2061 2.11e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.63  E-value: 2.11e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  2020 GYLFWTEWGQYPRIERSRLDGTERVVLVNVSISWPNGISVDY 2061
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
978-1011 2.39e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 2.39e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  978 PLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 1011
Cdd:cd00112     2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
935-967 2.58e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.58e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    935 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2000-2043 2.90e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 55.30  E-value: 2.90e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   2000 YVVISQGLDKPRAITVHPEKGYLFWTEWGQyPRIERSRLDGTER 2043
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1310-1503 3.10e-09

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 61.19  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1310 ALYWTDVVEDKIYRgklLD--NGALTSFEVViqyGLATPEGLAVDwIAGNIYWVESNLDQIevAKLD---GTLRTTLLAG 1384
Cdd:COG4257    29 AVWFTDQGGGRIGR---LDpaTGEFTEYPLG---GGSGPHGIAVD-PDGNLWFTDNGNNRI--GRIDpktGEITTFALPG 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1385 DIEHPRAIALDPRDGILFWTDWDASLPRIEAASmsgaGRRTVHRETGSGGWPNGLTVDylEKRILWI-DARSDAIysARY 1463
Cdd:COG4257   100 GGSNPHGIAFDPDGNLWFTDQGGNRIGRLDPAT----GEVTEFPLPTGGAGPYGIAVD--PDGNLWVtDFGANAI--GRI 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 126012562 1464 D-GSGHMEVLRGHEFLSHPFAVTLYG-GEVYWTDWRTNTLAK 1503
Cdd:COG4257   172 DpDTGTLTEYALPTPGAGPRGLAVDPdGNLWVADTGSGRIGR 213
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
936-967 3.49e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 3.49e-09
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562  936 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2734-2766 3.53e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 3.53e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDEA 2766
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3534-3570 3.71e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.95  E-value: 3.71e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3534 RTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESC 3570
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
854-886 4.73e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.52  E-value: 4.73e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562  854 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 886
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2817-2849 4.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 4.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2817 TCDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3575-3606 5.71e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 5.71e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   3575 CSESEFSCANGRCIAGRWKCDGDHDCADGSDE 3606
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1906-2122 6.83e-09

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 60.03  E-value: 6.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1906 LDPNDKSDALVPVSGTSLAVGIDFhAENDTIYWVDMGLSTIsrakrdqtWREDVVTNGIGRVE---------GIAVDwIA 1976
Cdd:COG4257    43 LDPATGEFTEYPLGGGSGPHGIAV-DPDGNLWFTDNGNNRI--------GRIDPKTGEITTFAlpgggsnphGIAFD-PD 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1977 GNIYWTDQGFDVIevARLN---GSFRYVVISQGLDKPRAITVHPeKGYLFWTEWG--QYPRIERSrlDGTERVVLVNVSI 2051
Cdd:COG4257   113 GNLWFTDQGGNRI--GRLDpatGEVTEFPLPTGGAGPYGIAVDP-DGNLWVTDFGanAIGRIDPD--TGTLTEYALPTPG 187
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562 2052 SWPNGISVDyQDGKLYWCDARTDKIERIDLETGENREVVLSSNNMDMFSVSV-FEDFIYWSDrtHANGSIKR 2122
Cdd:COG4257   188 AGPRGLAVD-PDGNLWVADTGSGRIGRFDPKTGTVTEYPLPGGGARPYGVAVdGDGRVWFAE--SGANRIVR 256
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3653-3685 7.22e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.79  E-value: 7.22e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3653 TCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDE 3685
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2696-2730 7.49e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.75  E-value: 7.49e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2696 CPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3993-4034 8.10e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 54.14  E-value: 8.10e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   3993 KTLISGMIDEPHAIVVDPLRGTMYWSDWGnHPKIETAAMDGT 4034
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGT 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3294-3330 1.24e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 53.40  E-value: 1.24e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3294 CKVNNGGCSNLCLLSPGGgHKCACPTNFYLGSDGRTC 3330
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3654-3686 1.30e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 1.30e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 3654 CPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDEN 3686
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3452-3485 1.83e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.83e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3452 TCAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDE 3485
Cdd:smart00192    1 TCPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3612-3647 1.86e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 1.86e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3612 RCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC 3647
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
361-401 1.92e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 52.99  E-value: 1.92e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562    361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGR 401
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1062-1097 2.01e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDEKSC 1097
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1185-1221 2.12e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 2.12e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1185 CSLNNGGCSHNCSVAPGeGIVCSCPLGMELGPDNHTC 1221
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3493-3526 2.22e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.22e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3493 TCGVDEFRCKdSGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:pfam00057    2 TCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1015-1051 2.24e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.24e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDEthANC 1051
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE--ENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
895-928 2.26e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  895 CPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESN 928
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
934-967 2.45e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   934 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3374-3408 2.65e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.65e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3374 CRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANC 3408
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
894-926 2.65e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.65e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    894 TCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDE 926
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2818-2849 2.92e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.92e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 2818 CDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
853-886 3.92e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.87  E-value: 3.92e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   853 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 886
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3948-4115 4.85e-08

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 57.71  E-value: 4.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3948 GVTHLNISGLKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTL-----ISGMIDEPHAIVVDPlRGTMYWSDWGN 4022
Cdd:cd05819    92 GGSGDGDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGEFLTTFgsggsGPGQFNGPTGVAVDS-DGNIYVADTGN 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4023 HpKI-----ETAAMDGTLRETLVQDNIQWPTGLAVDYhNERLYWADAKLSVIGSIRLNGTDPIVA---ADSKRGLSHPFS 4094
Cdd:cd05819   170 H-RIqvfdpDGNFLTTFGSTGTGPGQFNYPTGIAVDS-DGNIYVADSGNNRVQVFDPDGAGFGGNgnfLGSDGQFNRPSG 247
                         170       180
                  ....*....|....*....|..
gi 126012562 4095 IDVFED-YIYGVTYINNRVFKI 4115
Cdd:cd05819   248 LAVDSDgNLYVADTGNNRIQVF 269
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
978-1008 5.74e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.48  E-value: 5.74e-08
                            10        20        30
                    ....*....|....*....|....*....|.
gi 126012562    978 PLTQFTCNNGRCININWRCDNDNDCGDNSDE 1008
Cdd:smart00192    3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
3862-4064 6.74e-08

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 56.63  E-value: 6.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3862 AEGSEYQVLYIADDNEIRSLFPGHPHSAYEQAFQGDESVRIDAMDVHVKAGRVYWTNWHTGTISyrslppaAPPTTSNRH 3941
Cdd:COG3391    30 LGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVS-------VIDLATGKV 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3942 RRQIDRGvthlnisglKMPRGIAIDWVAGNVYWTDSGRD-VIEVAQMKGENRKTLISGmiDEPHAIVVDPLRGTMYWSDW 4020
Cdd:COG3391   103 VATIPVG---------GGPRGLAVDPDGGRLYVADSGNGrVSVIDTATGKVVATIPVG--AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 126012562 4021 GNHP------KIETAamDGTLRETLvqDNIQWPTGLAVDYHNERLYWADA 4064
Cdd:COG3391   172 GSNTvsvivsVIDTA--TGKVVATI--PVGGGPVGVAVSPDGRRLYVANR 217
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1062-1094 7.55e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.55e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDE 1094
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2857-2890 7.85e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.85e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2857 TCGPSEFRCANGRCLSsRQWECDGENDCHDQSDE 2890
Cdd:smart00192    1 TCPPGEFQCDNGRCIP-SSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 7.93e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.93e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192    1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2857-2891 8.17e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.10  E-value: 8.17e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562  2857 TCGPSEFRCANGRCLSsRQWECDGENDCHDQSDEA 2891
Cdd:pfam00057    2 TCSPNEFQCGSGECIP-RSWVCDGDPDCGDGSDEE 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3334-3365 9.54e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 9.54e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 3334 CTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3334-3365 1.00e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 50.71  E-value: 1.00e-07
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   3334 CTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3453-3489 1.08e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 1.08e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 3453 CAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDEpANC 3489
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDE-ENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
594-633 1.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    594 ETILKDGIHNVEGVAVDWMGDNLYWTDDGpKKTISVARLE 633
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLD 39
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
981-1011 1.41e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.41e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562   981 QFTCNNGRCININWRCDNDNDCGDNSDEAGC 1011
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3413-3448 1.47e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 3413 CLPSQFKCTNtNRCIPGIFRCNGQDNCGDGEDERDC 3448
Cdd:cd00112     1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3451-3489 1.69e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.94  E-value: 1.69e-07
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 126012562  3451 VTCAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDEpANC 3489
Cdd:pfam00057    1 STCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE-ENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2695-2727 1.74e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 1.74e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2695 RCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDE 2727
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
27-60 1.75e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.90  E-value: 1.75e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562   27 CSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1650-1693 1.91e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 1.91e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1650 ETVVSADLPNAHGLAVDWVSRNLFWTsyDTNKKQINVARLDGSF 1693
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWT--DWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3746-3776 1.95e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.90  E-value: 1.95e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDEEDC 3776
Cdd:cd00112     5 EFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1356-1396 2.17e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.85  E-value: 2.17e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1356 GNIYWVESNLDQ-IEVAKLDGTLRTTLLAGDIEHPRAIALDP 1396
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
894-928 2.26e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.55  E-value: 2.26e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562   894 TCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESN 928
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEEN 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2605-2639 2.30e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.30e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2605 CGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNC 2639
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3373-3405 2.35e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.35e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3373 KCRPGQFQCSTGICTNPAFICDGDNDCQDNSDE 3405
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1977-2017 2.46e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.85  E-value: 2.46e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1977 GNIYWTDQGFD-VIEVARLNGSFRYVVISQGLDKPRAITVHP 2017
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2858-2891 2.49e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 2858 CGPSEFRCANGRCLSSRqWECDGENDCHDQSDEA 2891
Cdd:cd00112     1 CPPNEFRCANGRCIPSS-WVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1104-1140 2.94e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.94e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDEENC 1140
Cdd:cd00112     1 CPPN-EFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3970-4010 3.05e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.47  E-value: 3.05e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3970 GNVYWTDSG-RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4010
Cdd:pfam00058    1 GRLYWTDSSlRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
316-358 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    316 TLLDLELYNPKGIALDPAMGKVFFTDYGQiPKVERCDMDGQNR 358
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
700-733 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562    700 WPNGLSLDIPAGRLYWVDAFYDRIETILLNGTDR 733
Cdd:smart00135   10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3373-3408 3.28e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.17  E-value: 3.28e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3373 KCRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANC 3408
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1734-1775 3.66e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.66e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   1734 RTLLFSGQKGPVGLAIDFPESKLYWISSGNHTINRCNLDGSG 1775
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3957-4115 3.81e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 55.02  E-value: 3.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEV-------AQMKGENRKTLisGMIDEPHAIVVDPlRGTMYWSDWGNHpKIETA 4029
Cdd:cd05819     7 LNNPQGIAVD-SSGNIYVADTGNNRIQVfdpdgnfITSFGSFGSGD--GQFNEPAGVAVDS-DGNLYVADTGNH-RIQKF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4030 AMDGTLRETLV-----QDNIQWPTGLAVDyHNERLYWADAKLSVIGSIRLNGTdPIVAADSK----RGLSHPFSIDVF-E 4099
Cdd:cd05819    82 DPDGNFLASFGgsgdgDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGE-FLTTFGSGgsgpGQFNGPTGVAVDsD 159
                         170
                  ....*....|....*.
gi 126012562 4100 DYIYGVTYINNRVFKI 4115
Cdd:cd05819   160 GNIYVADTGNHRIQVF 175
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1697-1734 3.92e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.92e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562   1697 VVQGLEQPHGLVVHPLRGKLYWTD--GDNISMANMDGSNR 1734
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDwgLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2734-2766 3.95e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.17  E-value: 3.95e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 126012562  2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDEA 2766
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1424-1468 4.23e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 4.23e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 126012562   1424 RTVHREtgSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGSGH 1468
Cdd:smart00135    1 RTLLSS--GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1062-1097 5.25e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.78  E-value: 5.25e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDEKSC 1097
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3652-3685 5.80e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 5.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3652 RTCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDE 3685
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3049-3093 6.33e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 6.33e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 126012562   3049 YTLLKQGLNNAVALDFDYREQMIYWTDVTTQgsMIRRMHLNGSNV 3093
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD--VIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2907-2939 1.04e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.04e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDERGC 2939
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
25-60 1.64e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.24  E-value: 1.64e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562    25 KTCSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEE 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2566-2600 1.97e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.82  E-value: 1.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2566 CKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPC 2600
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1104-1140 2.98e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.98e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDEENC 1140
Cdd:pfam00057    3 CSPN-EFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2565-2597 3.80e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 3.80e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2565 RCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDE 2597
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3413-3445 4.62e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 4.62e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3413 CLPSQFKCTNtNRCIPGIFRCNGQDNCGDGEDE 3445
Cdd:smart00192    2 CPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2816-2849 5.63e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  2816 STCDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2695-2730 5.74e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.74e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  2695 RCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2605-2636 7.84e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.32  E-value: 7.84e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2605 CGVGEFRCRDGTCIGNSSRCNQFVDCEDASDE 2636
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2603-2639 9.66e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 9.66e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2603 TACGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNC 2639
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2773-2806 1.07e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 1.07e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2773 TCGPSSFSCPGTHvCVPERWLCDGDKDCADGADE 2806
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3201-3241 1.51e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 44.84  E-value: 1.51e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3201 ERIYWADAREDY-IEFASLDGSNRHVVLSQDIPHIFALTLFE 3241
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1104-1137 1.79e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 1.79e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDE 1137
Cdd:smart00192    2 CPPG-EFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
158-188 1.87e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.16  E-value: 1.87e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562   158 GTCSQLCTNTDGSFICGCVEGYLLQPDNRSC 188
Cdd:pfam14670    6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3413-3448 1.96e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 1.96e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3413 CLPSQFKCtNTNRCIPGIFRCNGQDNCGDGEDERDC 3448
Cdd:pfam00057    3 CSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
662-708 2.38e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 44.07  E-value: 2.38e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 126012562   662 MYWTDWEEDPKdsrrgrLERAWMDGSHRDIFVTSKtVLWPNGLSLDI 708
Cdd:pfam00058    3 LYWTDSSLRAS------ISSADLNGSDRKTLFTDD-LQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
275-314 2.63e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 44.13  E-value: 2.63e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    275 ISLSLHHVEQMAIDWLTGNFYFVDDIDDRIFVCNRNGDTC 314
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1872-2084 2.71e-05

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 48.92  E-value: 2.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1872 MCTAGYSLRSGQQACEGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAEND--TIYWVDMGLSTISRA 1949
Cdd:COG3391    16 LALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADgrRLYVANSGSGRVSVI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1950 KRDQTWREDVVTNGiGRVEGIAVDWIAGNIYWTDQGFDviEVARLNGSFRYVV--ISQGlDKPRAITVHPEKGYLFWTEW 2027
Cdd:COG3391    96 DLATGKVVATIPVG-GGPRGLAVDPDGGRLYVADSGNG--RVSVIDTATGKVVatIPVG-AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 126012562 2028 GQyPRIER--SRLDGTERVVLVNVSI-SWPNGISVDYQDGKLYWCDART-------DKIERIDLETG 2084
Cdd:COG3391   172 GS-NTVSVivSVIDTATGKVVATIPVgGGPVGVAVSPDGRRLYVANRGSntsnggsNTVSVIDLATL 237
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3746-3773 2.83e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 2.83e-05
                            10        20
                    ....*....|....*....|....*...
gi 126012562   3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDE 3773
Cdd:smart00192    6 EFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2907-2936 3.04e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 3.04e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 126012562   2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDE 2936
Cdd:smart00192    4 PGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2774-2806 3.28e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.73  E-value: 3.28e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2774 CGPSSFSCpGTHVCVPERWLCDGDKDCADGADE 2806
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
2982-3011 3.31e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.77  E-value: 3.31e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2982 DVDECSTTFPCSQ--RCINTHGSYKCLCVEGY 3011
Cdd:smart00179    1 DIDECASGNPCQNggTCVNTVGSYRCECPPGY 32
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3090-3167 3.44e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 48.74  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3090 GSNVQ-VLHRTGLSNPDGLAVDwVGGNLYWCDKGRDtiEVSKLN-GAYR-TVLVSSGLREPRALVVDvQNGYLYWTDWGD 3166
Cdd:cd14952   123 GSNTQtVLPFTGLSNPDGVAVD-GAGNVYVTDTGNN--RVLKLAaGSTTqTVLPFTGLNSPSGVAVD-TAGNVYVTDHGN 198

                  .
gi 126012562 3167 H 3167
Cdd:cd14952   199 N 199
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1145-1178 3.62e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.35  E-value: 3.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1145 CRPPSHPCANNTsvCLPPDKLCDGNDDCGDGSDE 1178
Cdd:cd00112     1 CPPNEFRCANGR--CIPSSWVCDGEDDCGDGSDE 32
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3224-3264 4.30e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 43.36  E-value: 4.30e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3224 HVVLSQDIPHI--FALTLFEDYVYWTDWETKSINRAhKTTGTN 3264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVA-NLDGTN 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1145-1178 5.21e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.01  E-value: 5.21e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   1145 CRPPSHPCANNTsvCLPPDKLCDGNDDCGDGSDE 1178
Cdd:smart00192    2 CPPGEFQCDNGR--CIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2527-2557 5.26e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.96  E-value: 5.26e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 2527 QDEFECANGECINFSLTCDGVPHCKDKSDEK 2557
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
551-593 5.44e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.97  E-value: 5.44e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    551 HMIPIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTER 593
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
2982-3011 6.11e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.01  E-value: 6.11e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 2982 DVDECSTTFPCS--QRCINTHGSYKCLCVEGY 3011
Cdd:cd00054     1 DIDECASGNPCQngGTCVNTVGSYRCSCPPGY 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2772-2806 7.37e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.62  E-value: 7.37e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562  2772 KTCGPSSFSCpGTHVCVPERWLCDGDKDCADGADE 2806
Cdd:pfam00057    1 STCSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDE 34
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2527-2556 7.71e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 42.62  E-value: 7.71e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 126012562   2527 QDEFECANGECINFSLTCDGVPHCKDKSDE 2556
Cdd:smart00192    4 PGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1921-2084 8.07e-05

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 47.70  E-value: 8.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1921 TSLAVgidfhAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVE-----GIAVDwIAGNIYWTDQGFDVIEVARLN 1995
Cdd:cd05819    11 QGIAV-----DSSGNIYVADTGNNRIQVFDPDGNFITSFGSFGSGDGQfnepaGVAVD-SDGNLYVADTGNHRIQKFDPD 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1996 GSFRYVVISQGLDK-----PRAITVHPEkGYLFWTEWGQYpRIERSRLDGTERVVLVNVSISW-----PNGISVDyQDGK 2065
Cdd:cd05819    85 GNFLASFGGSGDGDgefngPRGIAVDSS-GNIYVADTGNH-RIQKFDPDGEFLTTFGSGGSGPgqfngPTGVAVD-SDGN 161
                         170
                  ....*....|....*....
gi 126012562 2066 LYWCDARTDKIERIDLETG 2084
Cdd:cd05819   162 IYVADTGNHRIQVFDPDGN 180
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2159-2194 8.56e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 42.23  E-value: 8.56e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2159 CAVANGGCQQLCLYRGRGqRACACAHG-MLAEDGASC 2194
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGyELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
71-104 9.70e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.24  E-value: 9.70e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057    2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1613-1649 1.23e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.20  E-value: 1.23e-04
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 126012562   1613 DIDNVTVLDYDAREQRVYWSDVRTQAIKRAFINGTGV 1649
Cdd:smart00135    7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1627-1667 1.30e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.15  E-value: 1.30e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1627 QRVYWSDVRTQA-IKRAFINGTGVETVVSADLPNAHGLAVDW 1667
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
140-187 1.93e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 46.22  E-value: 1.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 126012562  140 QLQadGKTCKDFDECSVYG-TCSQLCTNTDGSFICGCVEGYLLQPDNRS 187
Cdd:cd01475   178 KFQ--GKICVVPDLCATLShVCQQVCISTPGSYLCACTEGYALLEDNKT 224
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2907-2939 2.11e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.47  E-value: 2.11e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 126012562  2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDERGC 2939
Cdd:pfam00057    5 PNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
71-104 2.68e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 2.68e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562     71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1401-1443 3.00e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 3.00e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 126012562  1401 LFWTDWdaSL-PRIEAASMSGAGRRTVHreTGSGGWPNGLTVDY 1443
Cdd:pfam00058    3 LYWTDS--SLrASISSADLNGSDRKTLF--TDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2564-2600 3.03e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.03e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2564 RRCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPC 2600
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1714-1750 3.06e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 3.06e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1714 GKLYWTDGDN---ISMANMDGSNRTLLFS--GQKgPVGLAID 1750
Cdd:pfam00058    1 GRLYWTDSSLrasISSADLNGSDRKTLFTddLQH-PNAIAVD 41
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3695-3731 3.14e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 3695 CPPNRpFRCKNDRvCLWIGRQCDGTDNCGDGTDEEDC 3731
Cdd:cd00112     1 CPPNE-FRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3746-3776 3.28e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.28e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562  3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDEEDC 3776
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1850-1886 3.59e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 3.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1850 CSVNNGDCSQLCLPTSEtTRSCMCTAGYSLRSGQQAC 1886
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3332-3365 3.84e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.84e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3332 SNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
72-104 3.98e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.98e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562   72 CQPNEHNClGTELCVPMSRLCNGVQDCMDGSDE 104
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3957-4023 4.17e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 45.74  E-value: 4.17e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLIS-----GMIDEPHAIVVDPlRGTMYWSDWGNH 4023
Cdd:cd14956   200 FNYPYGIAID-PDGNVFVADFGNNRIQKFTADGTFLTSWGSpgtgpGQFKNPWGVVVDA-DGTVYVADSNNN 269
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3114-3153 5.10e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.22  E-value: 5.10e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  3114 GNLYWCDKG-RDTIEVSKLNGAYRTVLVSSGLREPRALVVD 3153
Cdd:pfam00058    1 GRLYWTDSSlRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2522-2557 6.40e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.92  E-value: 6.40e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  2522 SSCRAqDEFECANGECINFSLTCDGVPHCKDKSDEK 2557
Cdd:pfam00057    1 STCSP-NEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2482-2517 7.58e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.92  E-value: 7.58e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2482 CRINNGGCQDLCLLTHQGHVnCSCRGGRILQDD-LTC 2517
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYT-CSCPEGYELQDDgRTC 36
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3071-3111 8.67e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 39.84  E-value: 8.67e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  3071 IYWTDVTTQGSmIRRMHLNGSNVQVLHRTGLSNPDGLAVDW 3111
Cdd:pfam00058    3 LYWTDSSLRAS-ISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
2964-2985 1.12e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 38.93  E-value: 1.12e-03
                           10        20
                   ....*....|....*....|..
gi 126012562  2964 KCRCRPGFRLKDDGRTCADVDE 2985
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2666-2688 1.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.73  E-value: 1.47e-03
                          10        20
                  ....*....|....*....|...
gi 126012562 2666 CYAPSWVCDGANDCGDYSDERDC 2688
Cdd:cd00112    13 CIPSSWVCDGEDDCGDGSDEENC 35
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
1276-1460 2.11e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 43.34  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1276 RHEIRRIDLHKGDYSVLVPGLRNT------IALDfhlSQSALYWTDVVEDKIYRgklLDNGALtsFEVVIQYGLAT--PE 1347
Cdd:cd14962    32 RGAVFVFDLPNGKVFVIGNAGPNRfvspigVAID---ANGNLYVSDAELGKVFV---FDRDGK--FLRAIGAGALFkrPT 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1348 GLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTL-----LAGDIEHPRAIALDpRDGILFWTdwDASLPRIEAASMSGAG 1422
Cdd:cd14962   104 GIAVDPAGKRLYVVDTLAHKVKVFDLDGRLLFDIgkrgsGPGEFNLPTDLAVD-RDGNLYVT--DTMNFRVQIFDADGKF 180
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 126012562 1423 RRT---VHRETGSGGWPNGLTVDYlEKRILWIDARSDA--IYS 1460
Cdd:cd14962   181 LRSfgeRGDGPGSFARPKGIAVDS-EGNIYVVDAAFDNvqIFN 222
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 2.15e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 38.38  E-value: 2.15e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 126012562   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2323-2368 2.89e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 38.35  E-value: 2.89e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 126012562   2323 ETVITmSGDDHPRAFVLDECQNLMFWTNWNeqHPSIMRAALSGANV 2368
Cdd:smart00135    1 RTLLS-SGLGHPNGLAVDWIEGRLYWTDWG--LDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2389-2428 3.02e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 38.29  E-value: 3.02e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  2389 EKLYFSDATLD-KIERCEYDGSHRYVILKSEPVHPFGLAVY 2428
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVD 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
486-519 4.07e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.61  E-value: 4.07e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   486 PGGCSDICLlaNSHKARTCRCRSGFSLGSDGKSC 519
Cdd:pfam14670    5 NGGCSHLCL--NTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2662-2688 5.10e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 5.10e-03
                           10        20
                   ....*....|....*....|....*..
gi 126012562  2662 RTSLCYAPSWVCDGANDCGDYSDERDC 2688
Cdd:pfam00057   11 GSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1916-1956 5.65e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.58  E-value: 5.65e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1916 VPVSGTSLAVGIDFHAENDTIYWVDMGLSTISRAKRDQTWR 1956
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
335-375 6.46e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 37.14  E-value: 6.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562   335 GKVFFTDYGQIPKVERCDMDGQNRTKLVDSKIVFPHGITLD 375
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
 
Name Accession Description Interval E-value
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
4013-4054 7.13e-13

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 65.26  E-value: 7.13e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  4013 GTMYWSDWGNHPKIETAAMDGTLRETLVQDNIQWPTGLAVDY 4054
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3094-3136 3.04e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.77  E-value: 3.04e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3094 QVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYR 3136
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1959-1999 4.19e-12

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 63.39  E-value: 4.19e-12
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1959 VVTNGIGRVEGIAVDWIAGNIYWTDQGFDVIEVARLNGSFR 1999
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3182-3223 1.23e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 61.85  E-value: 1.23e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   3182 VIVDTKITWPNGLTLDYVTERIYWADAREDYIEFASLDGSNR 3223
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3955-3992 3.81e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.69  E-value: 3.81e-11
                            10        20        30
                    ....*....|....*....|....*....|....*...
gi 126012562   3955 SGLKMPRGIAIDWVAGNVYWTDSGRDVIEVAQMKGENR 3992
Cdd:smart00135    6 SGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
4037-4078 4.46e-11

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 60.31  E-value: 4.46e-11
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   4037 ETLVQDNIQWPTGLAVDYHNERLYWADAKLSVIGSIRLNGTD 4078
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3575-3609 6.47e-11

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 59.53  E-value: 6.47e-11
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3575 CSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDC 3609
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3573-3609 1.28e-10

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 58.80  E-value: 1.28e-10
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3573 RPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDC 3609
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3536-3570 1.86e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 58.37  E-value: 1.86e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3536 CEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESC 3570
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1336-1376 3.15e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 58.00  E-value: 3.15e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1336 EVVIQYGLATPEGLAVDWIAGNIYWVESNLDQIEVAKLDGT 1376
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2344-2386 3.49e-10

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 57.94  E-value: 3.49e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 126012562  2344 NLMFWTNWNeQHPSIMRAALSGANVLTLIEKDIRTPNGLAIDH 2386
Cdd:pfam00058    1 GRLYWTDSS-LRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
640-689 4.06e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.61  E-value: 4.06e-10
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|
gi 126012562    640 KTLIEGKMTHPRAIVVDPLNGWMYWTDWeedpkdsRRGRLERAWMDGSHR 689
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDW-------GLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2370-2411 6.00e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 57.23  E-value: 6.00e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   2370 TLIEKDIRTPNGLAIDHRAEKLYFSDATLDKIERCEYDGSHR 2411
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2045-2087 8.13e-10

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.84  E-value: 8.13e-10
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   2045 VLVNVSISWPNGISVDYQDGKLYWCDARTDKIERIDLeTGENR 2087
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL-DGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3613-3647 8.38e-10

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 56.45  E-value: 8.38e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3613 CDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC 3647
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
807-842 9.65e-10

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 56.48  E-value: 9.65e-10
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562   807 CRVNNGGCSSLCLATPGSRQCACAEDQVLDADGVTC 842
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3493-3526 1.00e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.00e-09
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3493 TCGVDEFRCKDsGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:smart00192    1 TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1380-1423 1.05e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.46  E-value: 1.05e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1380 TLLAGDIEHPRAIALDPRDGILFWTDWdaSLPRIEAASMSGAGR 1423
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDW--GLDVIEVANLDGTNR 43
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3612-3644 1.10e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 56.10  E-value: 1.10e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3612 RCDMDQFQCKSGHCIPLRWRCDADADCMDGSDE 3644
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3535-3567 1.54e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.72  E-value: 1.54e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3535 TCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDE 3567
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3138-3180 1.58e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 56.07  E-value: 1.58e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3138 VLVSSGLREPRALVVDVQNGYLYWTDWGDHSlIGRIGMDGSSR 3180
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDV-IEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1015-1048 1.60e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.60e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 1048
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3494-3526 1.65e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.68  E-value: 1.65e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 3494 CGVDEFRCKDsGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:cd00112     1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDE 32
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
853-885 1.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    853 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 885
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1015-1046 1.97e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.97e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 1046
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2734-2765 1.98e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 55.33  E-value: 1.98e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDE 2765
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3157-3198 2.07e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.63  E-value: 2.07e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3157 GYLYWTDWGDHSLIGRIGMDGSSRSVIVDTKITWPNGLTLDY 3198
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2020-2061 2.11e-09

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 55.63  E-value: 2.11e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  2020 GYLFWTEWGQYPRIERSRLDGTERVVLVNVSISWPNGISVDY 2061
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
978-1011 2.39e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 55.29  E-value: 2.39e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  978 PLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC 1011
Cdd:cd00112     2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
935-967 2.58e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.95  E-value: 2.58e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    935 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2000-2043 2.90e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 55.30  E-value: 2.90e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   2000 YVVISQGLDKPRAITVHPEKGYLFWTEWGQyPRIERSRLDGTER 2043
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1310-1503 3.10e-09

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 61.19  E-value: 3.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1310 ALYWTDVVEDKIYRgklLD--NGALTSFEVViqyGLATPEGLAVDwIAGNIYWVESNLDQIevAKLD---GTLRTTLLAG 1384
Cdd:COG4257    29 AVWFTDQGGGRIGR---LDpaTGEFTEYPLG---GGSGPHGIAVD-PDGNLWFTDNGNNRI--GRIDpktGEITTFALPG 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1385 DIEHPRAIALDPRDGILFWTDWDASLPRIEAASmsgaGRRTVHRETGSGGWPNGLTVDylEKRILWI-DARSDAIysARY 1463
Cdd:COG4257   100 GGSNPHGIAFDPDGNLWFTDQGGNRIGRLDPAT----GEVTEFPLPTGGAGPYGIAVD--PDGNLWVtDFGANAI--GRI 171
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 126012562 1464 D-GSGHMEVLRGHEFLSHPFAVTLYG-GEVYWTDWRTNTLAK 1503
Cdd:COG4257   172 DpDTGTLTEYALPTPGAGPRGLAVDPdGNLWVADTGSGRIGR 213
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
936-967 3.49e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 3.49e-09
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562  936 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2734-2766 3.53e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.91  E-value: 3.53e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDEA 2766
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3534-3570 3.71e-09

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 54.95  E-value: 3.71e-09
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3534 RTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEESC 3570
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
854-886 4.73e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 54.52  E-value: 4.73e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562  854 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 886
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2817-2849 4.93e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 4.93e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2817 TCDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3575-3606 5.71e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 54.18  E-value: 5.71e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   3575 CSESEFSCANGRCIAGRWKCDGDHDCADGSDE 3606
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1906-2122 6.83e-09

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 60.03  E-value: 6.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1906 LDPNDKSDALVPVSGTSLAVGIDFhAENDTIYWVDMGLSTIsrakrdqtWREDVVTNGIGRVE---------GIAVDwIA 1976
Cdd:COG4257    43 LDPATGEFTEYPLGGGSGPHGIAV-DPDGNLWFTDNGNNRI--------GRIDPKTGEITTFAlpgggsnphGIAFD-PD 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1977 GNIYWTDQGFDVIevARLN---GSFRYVVISQGLDKPRAITVHPeKGYLFWTEWG--QYPRIERSrlDGTERVVLVNVSI 2051
Cdd:COG4257   113 GNLWFTDQGGNRI--GRLDpatGEVTEFPLPTGGAGPYGIAVDP-DGNLWVTDFGanAIGRIDPD--TGTLTEYALPTPG 187
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562 2052 SWPNGISVDyQDGKLYWCDARTDKIERIDLETGENREVVLSSNNMDMFSVSV-FEDFIYWSDrtHANGSIKR 2122
Cdd:COG4257   188 AGPRGLAVD-PDGNLWVADTGSGRIGRFDPKTGTVTEYPLPGGGARPYGVAVdGDGRVWFAE--SGANRIVR 256
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3653-3685 7.22e-09

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 53.79  E-value: 7.22e-09
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3653 TCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDE 3685
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2696-2730 7.49e-09

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.75  E-value: 7.49e-09
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2696 CPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3993-4034 8.10e-09

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 54.14  E-value: 8.10e-09
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   3993 KTLISGMIDEPHAIVVDPLRGTMYWSDWGnHPKIETAAMDGT 4034
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGT 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
3294-3330 1.24e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 53.40  E-value: 1.24e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  3294 CKVNNGGCSNLCLLSPGGgHKCACPTNFYLGSDGRTC 3330
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGYELQDDGRTC 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3654-3686 1.30e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 53.36  E-value: 1.30e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 3654 CPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDEN 3686
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3452-3485 1.83e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.64  E-value: 1.83e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   3452 TCAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDE 3485
Cdd:smart00192    1 TCPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3612-3647 1.86e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 1.86e-08
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3612 RCDMDQFQCKSGHCIPLRWRCDADADCMDGSDEEAC 3647
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
361-401 1.92e-08

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 52.99  E-value: 1.92e-08
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562    361 LVDSKIVFPHGITLDLVSRLVYWADAYLDYIEVVDYEGKGR 401
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1062-1097 2.01e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.01e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDEKSC 1097
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1185-1221 2.12e-08

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 52.63  E-value: 2.12e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1185 CSLNNGGCSHNCSVAPGeGIVCSCPLGMELGPDNHTC 1221
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3493-3526 2.22e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.22e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3493 TCGVDEFRCKdSGRCIPARWKCDGEDDCGDGSDE 3526
Cdd:pfam00057    2 TCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1015-1051 2.24e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.24e-08
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1015 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDEthANC 1051
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE--ENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
895-928 2.26e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.59  E-value: 2.26e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562  895 CPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESN 928
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
934-967 2.45e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 52.64  E-value: 2.45e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   934 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE 967
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3374-3408 2.65e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.65e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 3374 CRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANC 3408
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
894-926 2.65e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 52.25  E-value: 2.65e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562    894 TCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDE 926
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2818-2849 2.92e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 52.21  E-value: 2.92e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 2818 CDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
853-886 3.92e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.87  E-value: 3.92e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   853 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 886
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3948-4115 4.85e-08

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 57.71  E-value: 4.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3948 GVTHLNISGLKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTL-----ISGMIDEPHAIVVDPlRGTMYWSDWGN 4022
Cdd:cd05819    92 GGSGDGDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGEFLTTFgsggsGPGQFNGPTGVAVDS-DGNIYVADTGN 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4023 HpKI-----ETAAMDGTLRETLVQDNIQWPTGLAVDYhNERLYWADAKLSVIGSIRLNGTDPIVA---ADSKRGLSHPFS 4094
Cdd:cd05819   170 H-RIqvfdpDGNFLTTFGSTGTGPGQFNYPTGIAVDS-DGNIYVADSGNNRVQVFDPDGAGFGGNgnfLGSDGQFNRPSG 247
                         170       180
                  ....*....|....*....|..
gi 126012562 4095 IDVFED-YIYGVTYINNRVFKI 4115
Cdd:cd05819   248 LAVDSDgNLYVADTGNNRIQVF 269
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
978-1008 5.74e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.48  E-value: 5.74e-08
                            10        20        30
                    ....*....|....*....|....*....|.
gi 126012562    978 PLTQFTCNNGRCININWRCDNDNDCGDNSDE 1008
Cdd:smart00192    3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
3862-4064 6.74e-08

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 56.63  E-value: 6.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3862 AEGSEYQVLYIADDNEIRSLFPGHPHSAYEQAFQGDESVRIDAMDVHVKAGRVYWTNWHTGTISyrslppaAPPTTSNRH 3941
Cdd:COG3391    30 LGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVS-------VIDLATGKV 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3942 RRQIDRGvthlnisglKMPRGIAIDWVAGNVYWTDSGRD-VIEVAQMKGENRKTLISGmiDEPHAIVVDPLRGTMYWSDW 4020
Cdd:COG3391   103 VATIPVG---------GGPRGLAVDPDGGRLYVADSGNGrVSVIDTATGKVVATIPVG--AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 126012562 4021 GNHP------KIETAamDGTLRETLvqDNIQWPTGLAVDYHNERLYWADA 4064
Cdd:COG3391   172 GSNTvsvivsVIDTA--TGKVVATI--PVGGGPVGVAVSPDGRRLYVANR 217
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1062-1094 7.55e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.55e-08
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDE 1094
Cdd:smart00192    2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2857-2890 7.85e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.85e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2857 TCGPSEFRCANGRCLSsRQWECDGENDCHDQSDE 2890
Cdd:smart00192    1 TCPPGEFQCDNGRCIP-SSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
26-59 7.93e-08

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 51.09  E-value: 7.93e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562     26 TCSPKQFACRDQiTCISKGWRCDGERDCPDGSDE 59
Cdd:smart00192    1 TCPPGEFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2857-2891 8.17e-08

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 51.10  E-value: 8.17e-08
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562  2857 TCGPSEFRCANGRCLSsRQWECDGENDCHDQSDEA 2891
Cdd:pfam00057    2 TCSPNEFQCGSGECIP-RSWVCDGDPDCGDGSDEE 35
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3334-3365 9.54e-08

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 9.54e-08
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 3334 CTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1275-1408 9.93e-08

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 56.57  E-value: 9.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1275 NRHEIRRIDLHKGDYSVLVPGLRNT----IALDfhlSQSALYWTDVVEDKIyrGKL-LDNGALTSFEVVIQygLATPEGL 1349
Cdd:COG4257   121 GGNRIGRLDPATGEVTEFPLPTGGAgpygIAVD---PDGNLWVTDFGANAI--GRIdPDTGTLTEYALPTP--GAGPRGL 193
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562 1350 AVDwIAGNIYWVESNLDQIevAKLD---GTLRTTLLAGDIEHPRAIALDPrDGILFWTDWDA 1408
Cdd:COG4257   194 AVD-PDGNLWVADTGSGRI--GRFDpktGTVTEYPLPGGGARPYGVAVDG-DGRVWFAESGA 251
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3334-3365 1.00e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 50.71  E-value: 1.00e-07
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   3334 CTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3453-3489 1.08e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.67  E-value: 1.08e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 3453 CAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDEpANC 3489
Cdd:cd00112     1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDE-ENC 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
594-633 1.27e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 50.68  E-value: 1.27e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    594 ETILKDGIHNVEGVAVDWMGDNLYWTDDGpKKTISVARLE 633
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLD 39
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
981-1011 1.41e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 50.32  E-value: 1.41e-07
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562   981 QFTCNNGRCININWRCDNDNDCGDNSDEAGC 1011
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3413-3448 1.47e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 50.28  E-value: 1.47e-07
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 126012562 3413 CLPSQFKCTNtNRCIPGIFRCNGQDNCGDGEDERDC 3448
Cdd:cd00112     1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3451-3489 1.69e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.94  E-value: 1.69e-07
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 126012562  3451 VTCAPNQFQCSiTKRCIPRVWVCDRDNDCVDGSDEpANC 3489
Cdd:pfam00057    1 STCSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDE-ENC 37
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2695-2727 1.74e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.94  E-value: 1.74e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2695 RCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDE 2727
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
27-60 1.75e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.90  E-value: 1.75e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562   27 CSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:cd00112     1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1650-1693 1.91e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.91  E-value: 1.91e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....
gi 126012562   1650 ETVVSADLPNAHGLAVDWVSRNLFWTsyDTNKKQINVARLDGSF 1693
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWT--DWGLDVIEVANLDGTN 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3746-3776 1.95e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.90  E-value: 1.95e-07
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDEEDC 3776
Cdd:cd00112     5 EFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1356-1396 2.17e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.85  E-value: 2.17e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1356 GNIYWVESNLDQ-IEVAKLDGTLRTTLLAGDIEHPRAIALDP 1396
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
894-928 2.26e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.55  E-value: 2.26e-07
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562   894 TCPSDRFKCENNRCIPNRWLCDGDNDCGNSEDESN 928
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEEN 36
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2605-2639 2.30e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.30e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2605 CGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNC 2639
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3373-3405 2.35e-07

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 49.55  E-value: 2.35e-07
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3373 KCRPGQFQCSTGICTNPAFICDGDNDCQDNSDE 3405
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1977-2017 2.46e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.85  E-value: 2.46e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1977 GNIYWTDQGFD-VIEVARLNGSFRYVVISQGLDKPRAITVHP 2017
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2858-2891 2.49e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.49e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 2858 CGPSEFRCANGRCLSSRqWECDGENDCHDQSDEA 2891
Cdd:cd00112     1 CPPNEFRCANGRCIPSS-WVCDGEDDCGDGSDEE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1104-1140 2.94e-07

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 49.51  E-value: 2.94e-07
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDEENC 1140
Cdd:cd00112     1 CPPN-EFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3970-4010 3.05e-07

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 49.47  E-value: 3.05e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3970 GNVYWTDSG-RDVIEVAQMKGENRKTLISGMIDEPHAIVVDP 4010
Cdd:pfam00058    1 GRLYWTDSSlRASISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
316-358 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    316 TLLDLELYNPKGIALDPAMGKVFFTDYGQiPKVERCDMDGQNR 358
Cdd:smart00135    2 TLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
700-733 3.22e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.52  E-value: 3.22e-07
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562    700 WPNGLSLDIPAGRLYWVDAFYDRIETILLNGTDR 733
Cdd:smart00135   10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3373-3408 3.28e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.17  E-value: 3.28e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3373 KCRPGQFQCSTGICTNPAFICDGDNDCQDNSDEANC 3408
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1734-1775 3.66e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.66e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 126012562   1734 RTLLFSGQKGPVGLAIDFPESKLYWISSGNHTINRCNLDGSG 1775
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3957-4115 3.81e-07

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 55.02  E-value: 3.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEV-------AQMKGENRKTLisGMIDEPHAIVVDPlRGTMYWSDWGNHpKIETA 4029
Cdd:cd05819     7 LNNPQGIAVD-SSGNIYVADTGNNRIQVfdpdgnfITSFGSFGSGD--GQFNEPAGVAVDS-DGNLYVADTGNH-RIQKF 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4030 AMDGTLRETLV-----QDNIQWPTGLAVDyHNERLYWADAKLSVIGSIRLNGTdPIVAADSK----RGLSHPFSIDVF-E 4099
Cdd:cd05819    82 DPDGNFLASFGgsgdgDGEFNGPRGIAVD-SSGNIYVADTGNHRIQKFDPDGE-FLTTFGSGgsgpGQFNGPTGVAVDsD 159
                         170
                  ....*....|....*.
gi 126012562 4100 DYIYGVTYINNRVFKI 4115
Cdd:cd05819   160 GNIYVADTGNHRIQVF 175
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1697-1734 3.92e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 3.92e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562   1697 VVQGLEQPHGLVVHPLRGKLYWTD--GDNISMANMDGSNR 1734
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDwgLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2734-2766 3.95e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 49.17  E-value: 3.95e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 126012562  2734 CSEAQFECQNHRCISKQWLCDGSDDCGDGSDEA 2766
Cdd:pfam00057    3 CSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1424-1468 4.23e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 49.14  E-value: 4.23e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 126012562   1424 RTVHREtgSGGWPNGLTVDYLEKRILWIDARSDAIYSARYDGSGH 1468
Cdd:smart00135    1 RTLLSS--GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1062-1097 5.25e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.78  E-value: 5.25e-07
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  1062 CHTDEFQCRlDGLCIPLRWRCDGDTDCMDSSDEKSC 1097
Cdd:pfam00057    3 CSPNEFQCG-SGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3652-3685 5.80e-07

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 48.40  E-value: 5.80e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3652 RTCPLDEFQCNNTLCKPLAWKCDGEDDCGDNSDE 3685
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
3102-3211 6.13e-07

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 53.93  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3102 SNPDGLAVDWVGGNLYWCDKGRDTieVSKLNGAYRTVL--VSSGlREPRALVVDVQNGYLYWTDWGDHS---LIGRIgmD 3176
Cdd:COG3391   110 GGPRGLAVDPDGGRLYVADSGNGR--VSVIDTATGKVVatIPVG-AGPHGIAVDPDGKRLYVANSGSNTvsvIVSVI--D 184
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 126012562 3177 GSSRSVI--VDTKITwPNGLTLDYVTERIYWADARED 3211
Cdd:COG3391   185 TATGKVVatIPVGGG-PVGVAVSPDGRRLYVANRGSN 220
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3049-3093 6.33e-07

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 48.75  E-value: 6.33e-07
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*
gi 126012562   3049 YTLLKQGLNNAVALDFDYREQMIYWTDVTTQgsMIRRMHLNGSNV 3093
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLD--VIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1594-1781 1.02e-06

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 53.16  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1594 RGVDLDAPYYNYIISFTVPDIDNVTVLDYDAREQRVYWSDVRTQAIkrAFIN---GTGVETVVSADLPnaHGLAVDWVSR 1670
Cdd:COG3391    47 AAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRV--SVIDlatGKVVATIPVGGGP--RGLAVDPDGG 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1671 NLFWTSYDTNKkqinVARLD---GSFKNAVVQGlEQPHGLVVHPLRGKLYWTDGDN------ISManMDGSNRTLL--FS 1739
Cdd:COG3391   123 RLYVADSGNGR----VSVIDtatGKVVATIPVG-AGPHGIAVDPDGKRLYVANSGSntvsviVSV--IDTATGKVVatIP 195
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 126012562 1740 GQKGPVGLAIDFPESKLYWISSGNHTINRcnlDGSGLEVIDA 1781
Cdd:COG3391   196 VGGGPVGVAVSPDGRRLYVANRGSNTSNG---GSNTVSVIDL 234
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2907-2939 1.04e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 47.97  E-value: 1.04e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDERGC 2939
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
25-60 1.64e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 47.24  E-value: 1.64e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562    25 KTCSPKQFACRDQiTCISKGWRCDGERDCPDGSDEA 60
Cdd:pfam00057    1 STCSPNEFQCGSG-ECIPRSWVCDGDPDCGDGSDEE 35
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
1931-2080 1.70e-06

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 53.06  E-value: 1.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1931 AENDTIYWVDMGLSTISRAKRD-----QTWREDVVTNGIGRVEGIAVDwIAGNIYWTDQGFDVIEVARLNGSFRYVVISQ 2005
Cdd:cd14956    21 DADDNVYVADARNGRIQVFDKDgtflrRFGTTGDGPGQFGRPRGLAVD-KDGWLYVADYWGDRIQVFTLTGELQTIGGSS 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 2006 G-----LDKPRAITVHPeKGYLFWTEWGQYpRIERSRLDGT---------ERVvlvnVSISWPNGISVDyQDGKLYWCDA 2071
Cdd:cd14956   100 GsgpgqFNAPRGVAVDA-DGNLYVADFGNQ-RIQKFDPDGSflrqwggtgIEP----GSFNYPRGVAVD-PDGTLYVADT 172

                  ....*....
gi 126012562 2072 RTDKIERID 2080
Cdd:cd14956   173 YNDRIQVFD 181
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2566-2600 1.97e-06

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 46.82  E-value: 1.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 126012562 2566 CKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPC 2600
Cdd:cd00112     1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
1104-1140 2.98e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 46.47  E-value: 2.98e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDEENC 1140
Cdd:pfam00057    3 CSPN-EFQCGSG-ECIPRSWVCDGDPDCGDGSDEENC 37
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1291-1515 3.65e-06

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 51.62  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1291 VLVPGLRNTIALDFHLSQSALYWTDVVEDKIYRGKLLDNGALTSFEVVIQYGLATPEGLAVDWIAGNIYWVeSNLDQIEV 1370
Cdd:COG3391    14 AVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYV-ANSGSGRV 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1371 AKLD---GTLRTTLLAGDieHPRAIALDPRDGILFWTDW-DASLPRIEAASMsgagrrTVHRETGSGGWPNGLTVDYLEK 1446
Cdd:COG3391    93 SVIDlatGKVVATIPVGG--GPRGLAVDPDGGRLYVADSgNGRVSVIDTATG------KVVATIPVGAGPHGIAVDPDGK 164
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 126012562 1447 RILWIDARSDAIYS--ARYDGSGhMEVLRGHEFLSHPFAVTLY--GGEVYWTDWRTNTlakANkWTGHNVTVV 1515
Cdd:COG3391   165 RLYVANSGSNTVSVivSVIDTAT-GKVVATIPVGGGPVGVAVSpdGRRLYVANRGSNT---SN-GGSNTVSVI 232
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2565-2597 3.80e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 3.80e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   2565 RCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDE 2597
Cdd:smart00192    1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
3956-4115 3.92e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 51.94  E-value: 3.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3956 GLKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLISGMIDEPHAIVVDPlRGTMYWSDWGNH------PKieta 4029
Cdd:COG4257    15 PGSGPRDVAVD-PDGAVWFTDQGGGRIGRLDPATGEFTEYPLGGGSGPHGIAVDP-DGNLWFTDNGNNrigridPK---- 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4030 amDGTLRETLVQDNIQWPTGLAVDyHNERLYWADAKLSVIGSIRLNgTDPIVAADSKRGLSHPFSIDV-FEDYIYGVTYI 4108
Cdd:COG4257    89 --TGEITTFALPGGGSNPHGIAFD-PDGNLWFTDQGGNRIGRLDPA-TGEVTEFPLPTGGAGPYGIAVdPDGNLWVTDFG 164

                  ....*..
gi 126012562 4109 NNRVFKI 4115
Cdd:COG4257   165 ANAIGRI 171
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1906-2084 4.37e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 51.56  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1906 LDPNDKSDALVPV-SGTSLAVGIDFHAeNDTIYWVDMGLSTISR-AKRDQTWREDVVTNGIGRVEGIAVDwIAGNIYWTD 1983
Cdd:COG4257    85 IDPKTGEITTFALpGGGSNPHGIAFDP-DGNLWFTDQGGNRIGRlDPATGEVTEFPLPTGGAGPYGIAVD-PDGNLWVTD 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1984 QGFDVIevARLN---GSFRYVVISQGLDKPRAITVHPEkGYLFWTEWGqyprieRSRL------DGTERVVLVNVSISWP 2054
Cdd:COG4257   163 FGANAI--GRIDpdtGTLTEYALPTPGAGPRGLAVDPD-GNLWVADTG------SGRIgrfdpkTGTVTEYPLPGGGARP 233
                         170       180       190
                  ....*....|....*....|....*....|
gi 126012562 2055 NGISVDyQDGKLYWCDARTDKIERIDLETG 2084
Cdd:COG4257   234 YGVAVD-GDGRVWFAESGANRIVRFDPDTE 262
Vgb COG4257
Streptogramin lyase [Defense mechanisms];
1933-2091 4.37e-06

Streptogramin lyase [Defense mechanisms];


Pssm-ID: 443399 [Multi-domain]  Cd Length: 270  Bit Score: 51.56  E-value: 4.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1933 NDTIYWVDMGLSTISR-AKRDQTWREdVVTNGIGRVEGIAVDwIAGNIYWTDQGFDVIevARLN---GSFRYVVISQGLD 2008
Cdd:COG4257    27 DGAVWFTDQGGGRIGRlDPATGEFTE-YPLGGGSGPHGIAVD-PDGNLWFTDNGNNRI--GRIDpktGEITTFALPGGGS 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 2009 KPRAITVHPeKGYLFWTE-WGQypRIerSRLD-GTERVVLVNV--SISWPNGISVDyQDGKLYWCDARTDKIERIDLETG 2084
Cdd:COG4257   103 NPHGIAFDP-DGNLWFTDqGGN--RI--GRLDpATGEVTEFPLptGGAGPYGIAVD-PDGNLWVTDFGANAIGRIDPDTG 176

                  ....*..
gi 126012562 2085 ENREVVL 2091
Cdd:COG4257   177 TLTEYAL 183
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3413-3445 4.62e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 46.09  E-value: 4.62e-06
                            10        20        30
                    ....*....|....*....|....*....|...
gi 126012562   3413 CLPSQFKCTNtNRCIPGIFRCNGQDNCGDGEDE 3445
Cdd:smart00192    2 CPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2816-2849 5.63e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.63e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  2816 STCDDREFMCQNRQCIPKHFVCDHDRDCADGSDE 2849
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2695-2730 5.74e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 45.70  E-value: 5.74e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  2695 RCPLNYFACPSGRCIPMSWTCDKEDDCEHGEDETHC 2730
Cdd:pfam00057    2 TCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
3067-3207 7.73e-06

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 50.66  E-value: 7.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3067 REQMIYWTDVTTQGsmIRRMHLNGSNVQVLHRT-GLSNpdGLAVDWvGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSGLR 3145
Cdd:COG3386    17 PDGRLYWVDIPGGR--IHRYDPDGGAVEVFAEPsGRPN--GLAFDP-DGRLLVADHGRGLVRFDPADGEVTVLADEYGKP 91
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 126012562 3146 EPRA--LVVDvQNGYLYWTDWGDHSLIG---RIGMDGSSRsvIVDTKITWPNGLTLDYVTERIYWAD 3207
Cdd:COG3386    92 LNRPndGVVD-PDGRLYFTDMGEYLPTGalyRVDPDGSLR--VLADGLTFPNGIAFSPDGRTLYVAD 155
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2605-2636 7.84e-06

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 45.32  E-value: 7.84e-06
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2605 CGVGEFRCRDGTCIGNSSRCNQFVDCEDASDE 2636
Cdd:smart00192    2 CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2603-2639 9.66e-06

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.93  E-value: 9.66e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2603 TACGVGEFRCRDGTCIGNSSRCNQFVDCEDASDEMNC 2639
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
292-454 9.92e-06

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 50.39  E-value: 9.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  292 GNFYFVDDIDDRIFVCNRNGDTCVTLL-----DLELYNPKGIALDPAmGKVFFTDYGQIpKVERCDMDGQNRTKLV---- 362
Cdd:cd05819    19 GNIYVADTGNNRIQVFDPDGNFITSFGsfgsgDGQFNEPAGVAVDSD-GNLYVADTGNH-RIQKFDPDGNFLASFGgsgd 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  363 -DSKIVFPHGITLDLVSRlVYWADAYLDYIEVVDYEGKGRQTI-IQGILIEHL---YGLTVF-ENYLYATNSDNAnaqqk 436
Cdd:cd05819    97 gDGEFNGPRGIAVDSSGN-IYVADTGNHRIQKFDPDGEFLTTFgSGGSGPGQFngpTGVAVDsDGNIYVADTGNH----- 170
                         170
                  ....*....|....*...
gi 126012562  437 tsviRVNRFNSTEYQVVT 454
Cdd:cd05819   171 ----RIQVFDPDGNFLTT 184
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2773-2806 1.07e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.93  E-value: 1.07e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   2773 TCGPSSFSCPGTHvCVPERWLCDGDKDCADGADE 2806
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3090-3202 1.28e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 49.90  E-value: 1.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3090 GSNVQ-VLHRTGLSNPDGLAVDwVGGNLYWCDKGRDTieVSKLNG--AYRTVLVSSGLREPRALVVDvQNGYLYWTDwGD 3166
Cdd:cd14952    81 GSTTQtVLPFTGLNDPTGVAVD-AAGNVYVADTGNNR--VLKLAAgsNTQTVLPFTGLSNPDGVAVD-GAGNVYVTD-TG 155
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 126012562 3167 HSLIGRIGMDGSSRSVIVDTKITWPNGLTLD-----YVTER 3202
Cdd:cd14952   156 NNRVLKLAAGSTTQTVLPFTGLNSPSGVAVDtagnvYVTDH 196
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3201-3241 1.51e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 44.84  E-value: 1.51e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  3201 ERIYWADAREDY-IEFASLDGSNRHVVLSQDIPHIFALTLFE 3241
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1104-1137 1.79e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 44.16  E-value: 1.79e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   1104 CDPSvKFGCKDSaRCISKAWVCDGDNDCEDNSDE 1137
Cdd:smart00192    2 CPPG-EFQCDNG-RCIPSSWVCDGVDDCGDGSDE 33
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
158-188 1.87e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 44.16  E-value: 1.87e-05
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562   158 GTCSQLCTNTDGSFICGCVEGYLLQPDNRSC 188
Cdd:pfam14670    6 GGCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3413-3448 1.96e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 44.16  E-value: 1.96e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  3413 CLPSQFKCtNTNRCIPGIFRCNGQDNCGDGEDERDC 3448
Cdd:pfam00057    3 CSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
614-657 2.01e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 44.46  E-value: 2.01e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 126012562   614 DNLYWTDDGPKKTISVARLEkaAQTRKTLIEGKMTHPRAIVVDP 657
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLN--GSDRKTLFTDDLQHPNAIAVDP 42
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
662-708 2.38e-05

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 44.07  E-value: 2.38e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 126012562   662 MYWTDWEEDPKdsrrgrLERAWMDGSHRDIFVTSKtVLWPNGLSLDI 708
Cdd:pfam00058    3 LYWTDSSLRAS------ISSADLNGSDRKTLFTDD-LQHPNAIAVDP 42
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3950-4114 2.62e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 49.13  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3950 THLNISGLKMPRGIAIDwVAGNVYWTDSGRD-VIEVAqmKGENRKTL--ISGMiDEPHAIVVDPlRGTMYWSDWGNHPKI 4026
Cdd:cd14952    44 TVLPFTGLYQPQGVAVD-AAGTVYVTDFGNNrVLKLA--AGSTTQTVlpFTGL-NDPTGVAVDA-AGNVYVADTGNNRVL 118
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4027 ETAAMDGTlRETLVQDNIQWPTGLAVDyHNERLYWADAKLSVIGSIRLNGTDPIVAadSKRGLSHPFSIDV-FEDYIYGV 4105
Cdd:cd14952   119 KLAAGSNT-QTVLPFTGLSNPDGVAVD-GAGNVYVTDTGNNRVLKLAAGSTTQTVL--PFTGLNSPSGVAVdTAGNVYVT 194

                  ....*....
gi 126012562 4106 TYINNRVFK 4114
Cdd:cd14952   195 DHGNNRVLK 203
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
275-314 2.63e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 44.13  E-value: 2.63e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|
gi 126012562    275 ISLSLHHVEQMAIDWLTGNFYFVDDIDDRIFVCNRNGDTC 314
Cdd:smart00135    4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1872-2084 2.71e-05

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 48.92  E-value: 2.71e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1872 MCTAGYSLRSGQQACEGVGSFLLYSVHEGIRGIPLDPNDKSDALVPVSGTSLAVGIDFHAEND--TIYWVDMGLSTISRA 1949
Cdd:COG3391    16 LALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADgrRLYVANSGSGRVSVI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1950 KRDQTWREDVVTNGiGRVEGIAVDWIAGNIYWTDQGFDviEVARLNGSFRYVV--ISQGlDKPRAITVHPEKGYLFWTEW 2027
Cdd:COG3391    96 DLATGKVVATIPVG-GGPRGLAVDPDGGRLYVADSGNG--RVSVIDTATGKVVatIPVG-AGPHGIAVDPDGKRLYVANS 171
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 126012562 2028 GQyPRIER--SRLDGTERVVLVNVSI-SWPNGISVDYQDGKLYWCDART-------DKIERIDLETG 2084
Cdd:COG3391   172 GS-NTVSVivSVIDTATGKVVATIPVgGGPVGVAVSPDGRRLYVANRGSntsnggsNTVSVIDLATL 237
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
3746-3773 2.83e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 2.83e-05
                            10        20
                    ....*....|....*....|....*...
gi 126012562   3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDE 3773
Cdd:smart00192    6 EFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2907-2936 3.04e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.78  E-value: 3.04e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 126012562   2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDE 2936
Cdd:smart00192    4 PGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
285-448 3.11e-05

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 48.85  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  285 MAIDwLTGNFYFVDDIDDRIFVCNRNGDTCVTLL-----DLELYNPKGIALDPAmGKVFFTDYG--QIpkvERCDMDGQN 357
Cdd:cd05819    60 VAVD-SDGNLYVADTGNHRIQKFDPDGNFLASFGgsgdgDGEFNGPRGIAVDSS-GNIYVADTGnhRI---QKFDPDGEF 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  358 RTKL-----VDSKIVFPHGITLDLvSRLVYWADAYLDYIEVVDYEGK-----GRQTIIQGILIeHLYGLTVFEN-YLYAT 426
Cdd:cd05819   135 LTTFgsggsGPGQFNGPTGVAVDS-DGNIYVADTGNHRIQVFDPDGNflttfGSTGTGPGQFN-YPTGIAVDSDgNIYVA 212
                         170       180
                  ....*....|....*....|..
gi 126012562  427 NSDNAnaqqktsviRVNRFNST 448
Cdd:cd05819   213 DSGNN---------RVQVFDPD 225
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2774-2806 3.28e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.73  E-value: 3.28e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562 2774 CGPSSFSCpGTHVCVPERWLCDGDKDCADGADE 2806
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
EGF_CA smart00179
Calcium-binding EGF-like domain;
2982-3011 3.31e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 43.77  E-value: 3.31e-05
                            10        20        30
                    ....*....|....*....|....*....|..
gi 126012562   2982 DVDECSTTFPCSQ--RCINTHGSYKCLCVEGY 3011
Cdd:smart00179    1 DIDECASGNPCQNggTCVNTVGSYRCECPPGY 32
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3090-3167 3.44e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 48.74  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3090 GSNVQ-VLHRTGLSNPDGLAVDwVGGNLYWCDKGRDtiEVSKLN-GAYR-TVLVSSGLREPRALVVDvQNGYLYWTDWGD 3166
Cdd:cd14952   123 GSNTQtVLPFTGLSNPDGVAVD-GAGNVYVTDTGNN--RVLKLAaGSTTqTVLPFTGLNSPSGVAVD-TAGNVYVTDHGN 198

                  .
gi 126012562 3167 H 3167
Cdd:cd14952   199 N 199
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
1145-1178 3.62e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 43.35  E-value: 3.62e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 126012562 1145 CRPPSHPCANNTsvCLPPDKLCDGNDDCGDGSDE 1178
Cdd:cd00112     1 CPPNEFRCANGR--CIPSSWVCDGEDDCGDGSDE 32
DUF5050 pfam16472
Domain of unknown function (DUF5050);
3035-3253 3.70e-05

Domain of unknown function (DUF5050);


Pssm-ID: 465128 [Multi-domain]  Cd Length: 282  Bit Score: 48.78  E-value: 3.70e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  3035 NRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYreqmIYWTDV-TTQGSMIRRMHLNGSNvqvlhRTGLSNPDGLAVDWVG 3113
Cdd:pfam16472   77 SLTGLYRIKLDGTNRTKLDDDPSLYVSLYGNY----IYYQHYdNSDGGTLYKIKIDGKE-----KTKLSDEPISPASVSD 147
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  3114 GNLYWCDKGRD-TIEVSKLNGAYRTVLVSSGLREPralvvDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIVDTKITWPN 3192
Cdd:pfam16472  148 GWIYYSGTSDDhYIYKLNTDGDSISKLYDGNSYMP-----NVNGDYIYYIDLSNNYALYRMNLSGGEKEVLTDDRVDNYN 222
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562  3193 gLTLDYvterIYWADARED-YIEFASLDGSNRHVVLSQDIPHIfalTLFEDYVYWTDWETKS 3253
Cdd:pfam16472  223 -VYGNW----IYYQNNGDDnKLYRINTDGSNKEKLAEGNYTNI---NITSDYIYFTDFGSDS 276
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
3224-3264 4.30e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 43.36  E-value: 4.30e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562   3224 HVVLSQDIPHI--FALTLFEDYVYWTDWETKSINRAhKTTGTN 3264
Cdd:smart00135    1 RTLLSSGLGHPngLAVDWIEGRLYWTDWGLDVIEVA-NLDGTN 42
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
1145-1178 5.21e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 43.01  E-value: 5.21e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562   1145 CRPPSHPCANNTsvCLPPDKLCDGNDDCGDGSDE 1178
Cdd:smart00192    2 CPPGEFQCDNGR--CIPSSWVCDGVDDCGDGSDE 33
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2527-2557 5.26e-05

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 42.96  E-value: 5.26e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 126012562 2527 QDEFECANGECINFSLTCDGVPHCKDKSDEK 2557
Cdd:cd00112     3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
551-593 5.44e-05

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.97  E-value: 5.44e-05
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|...
gi 126012562    551 HMIPIENLMNPRALDFHAETGFIYFADTTSYLIGRQKIDGTER 593
Cdd:smart00135    1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
2982-3011 6.11e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 43.01  E-value: 6.11e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 126012562 2982 DVDECSTTFPCS--QRCINTHGSYKCLCVEGY 3011
Cdd:cd00054     1 DIDECASGNPCQngGTCVNTVGSYRCSCPPGY 32
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2772-2806 7.37e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.62  E-value: 7.37e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 126012562  2772 KTCGPSSFSCpGTHVCVPERWLCDGDKDCADGADE 2806
Cdd:pfam00057    1 STCSPNEFQC-GSGECIPRSWVCDGDPDCGDGSDE 34
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1915-2090 7.63e-05

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 47.96  E-value: 7.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1915 LVPVSGTSLAVGIDFHAENdTIYWVDMGLSTISRAKRDqTWREDVVTNGIGRVEGIAVDWiAGNIYWTDQGFDVIEVARL 1994
Cdd:COG3386     1 KLADAGFRLGEGPVWDPDG-RLYWVDIPGGRIHRYDPD-GGAVEVFAEPSGRPNGLAFDP-DGRLLVADHGRGLVRFDPA 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1995 NGSFRyvVISQGLDKPRA----ITVHPeKGYLFWTEWGQYPRIER-SRLDGTERVVLVNVSISWPNGISVDyQDGK-LYW 2068
Cdd:COG3386    78 DGEVT--VLADEYGKPLNrpndGVVDP-DGRLYFTDMGEYLPTGAlYRVDPDGSLRVLADGLTFPNGIAFS-PDGRtLYV 153
                         170       180
                  ....*....|....*....|....*
gi 126012562 2069 CDARTDKIERIDL-ETGE--NREVV 2090
Cdd:COG3386   154 ADTGAGRIYRFDLdADGTlgNRRVF 178
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
2527-2556 7.71e-05

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 42.62  E-value: 7.71e-05
                            10        20        30
                    ....*....|....*....|....*....|
gi 126012562   2527 QDEFECANGECINFSLTCDGVPHCKDKSDE 2556
Cdd:smart00192    4 PGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
1921-2084 8.07e-05

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 47.70  E-value: 8.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1921 TSLAVgidfhAENDTIYWVDMGLSTISRAKRDQTWREDVVTNGIGRVE-----GIAVDwIAGNIYWTDQGFDVIEVARLN 1995
Cdd:cd05819    11 QGIAV-----DSSGNIYVADTGNNRIQVFDPDGNFITSFGSFGSGDGQfnepaGVAVD-SDGNLYVADTGNHRIQKFDPD 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1996 GSFRYVVISQGLDK-----PRAITVHPEkGYLFWTEWGQYpRIERSRLDGTERVVLVNVSISW-----PNGISVDyQDGK 2065
Cdd:cd05819    85 GNFLASFGGSGDGDgefngPRGIAVDSS-GNIYVADTGNH-RIQKFDPDGEFLTTFGSGGSGPgqfngPTGVAVD-SDGN 161
                         170
                  ....*....|....*....
gi 126012562 2066 LYWCDARTDKIERIDLETG 2084
Cdd:cd05819   162 IYVADTGNHRIQVFDPDGN 180
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2159-2194 8.56e-05

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 42.23  E-value: 8.56e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2159 CAVANGGCQQLCLYRGRGqRACACAHG-MLAEDGASC 2194
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGG-YTCSCPEGyELQDDGRTC 36
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3095-3202 9.35e-05

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 47.20  E-value: 9.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3095 VLHRTGLSNPDGLAVDwVGGNLYWCDKGRDtiEVSKLN-GAYR-TVLVSSGLREPRALVVDVqNGYLYWTDWGDHSLIGR 3172
Cdd:cd14952     3 VLPFTGLDGPGGVAVD-AAGNVYVADSGNN--RVLKLAaGSTTqTVLPFTGLYQPQGVAVDA-AGTVYVTDFGNNRVLKL 78
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 126012562 3173 IGmDGSSRSVIVDTKITWPNGLTLD-----YVTER 3202
Cdd:cd14952    79 AA-GSTTQTVLPFTGLNDPTGVAVDaagnvYVADT 112
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
71-104 9.70e-05

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 42.24  E-value: 9.70e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562    71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:pfam00057    2 TCSPNEFQCGSGE-CIPRSWVCDGDPDCGDGSDE 34
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
1596-1766 1.02e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 47.00  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1596 VDLDAPYYNYIISFTVPDIDNVTVLDYDAREQRVYWSDVRTQAIKRAFINGTGVETVVSADLPNAHGLAVDWV-----SR 1670
Cdd:COG3391     1 ALVASSLLVAVLLAVLALAALAVAVAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGAdagadGR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1671 NLFWTSYDTNKKQInVARLDGSFKNAVVQGlEQPHGLVVHPLRGKLYWTDGDNISMANMDGSNRTLL--FSGQKGPVGLA 1748
Cdd:COG3391    81 RLYVANSGSGRVSV-IDLATGKVVATIPVG-GGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVatIPVGAGPHGIA 158
                         170
                  ....*....|....*...
gi 126012562 1749 IDFPESKLYWISSGNHTI 1766
Cdd:COG3391   159 VDPDGKRLYVANSGSNTV 176
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3957-4064 1.16e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 47.20  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLISG-MIDEPHAIVVDPLRGTMYWSDWGNHpKIETAAMDGTL 4035
Cdd:cd14962    56 FVSPIGVAID-ANGNLYVSDAELGKVFVFDRDGKFLRAIGAGaLFKRPTGIAVDPAGKRLYVVDTLAH-KVKVFDLDGRL 133
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 126012562 4036 RETLVQD-------NIqwPTGLAVDyHNERLYWADA 4064
Cdd:cd14962   134 LFDIGKRgsgpgefNL--PTDLAVD-RDGNLYVTDT 166
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1613-1649 1.23e-04

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 42.20  E-value: 1.23e-04
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 126012562   1613 DIDNVTVLDYDAREQRVYWSDVRTQAIKRAFINGTGV 1649
Cdd:smart00135    7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
302-442 1.28e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 47.00  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  302 DRIFVCNRNGDTcVTLLDLE----------LYNPKGIALDPAMGKVFFTDY--GQIPKVercdmDGQNRTklVDSKI--- 366
Cdd:COG3391    80 RRLYVANSGSGR-VSVIDLAtgkvvatipvGGGPRGLAVDPDGGRLYVADSgnGRVSVI-----DTATGK--VVATIpvg 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  367 VFPHGITLDLVSRLVYWADAYLD----YIEVVDYE-GKGRQTIIQGiliEHLYGLTV--FENYLYATNSDNANAQQKTSV 439
Cdd:COG3391   152 AGPHGIAVDPDGKRLYVANSGSNtvsvIVSVIDTAtGKVVATIPVG---GGPVGVAVspDGRRLYVANRGSNTSNGGSNT 228

                  ...
gi 126012562  440 IRV 442
Cdd:COG3391   229 VSV 231
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1627-1667 1.30e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 42.15  E-value: 1.30e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1627 QRVYWSDVRTQA-IKRAFINGTGVETVVSADLPNAHGLAVDW 1667
Cdd:pfam00058    1 GRLYWTDSSLRAsISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL_like_2 cd14957
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ...
3948-4113 1.82e-04

Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271327 [Multi-domain]  Cd Length: 280  Bit Score: 46.88  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3948 GVTHLNISGLKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLIS-----GMIDEPHAIVVDPlRGTMYWSDWGN 4022
Cdd:cd14957   102 GTGGSGDGQFNGPYGIAVD-SNGNIYVADTGNHRIQVFTSSGTFSYSIGSggtgpGQFNGPQGIAVDS-DGNIYVADTGN 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4023 HpKIETAAMDGTLRETLVQDNIQ-----WPTGLAVD---------YHNERLYWADAKLSVIGSIRLNGTDPivaadskRG 4088
Cdd:cd14957   180 H-RIQVFTSSGTFQYTFGSSGSGpgqfsDPYGIAVDsdgniyvadTGNHRIQVFTSSGAYQYSIGTSGSGN-------GQ 251
                         170       180
                  ....*....|....*....|....*.
gi 126012562 4089 LSHPFSIDVF-EDYIYGVTYINNRVF 4113
Cdd:cd14957   252 FNYPYGIAVDnDGKIYVADSNNNRIQ 277
NHL_like_1 cd14953
Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat ...
3960-4115 1.87e-04

Uncharacterized NHL-repeat domain in bacterial proteins; This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271323 [Multi-domain]  Cd Length: 323  Bit Score: 47.14  E-value: 1.87e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3960 PRGIAIDwVAGNVYWTDSGRDVIevaqmkgenRKTLISGMI----------------------DEPHAIVVDPlRGTMYW 4017
Cdd:cd14953    79 PSGVAVD-AAGNLYVADTGNHRI---------RKITPDGVVstlagtgtagfsddggataaqfNYPTGVAVDA-AGNLYV 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4018 SDWGNHP--KIETA--------------AMDGTLRETLVQdniqWPTGLAVDYHNeRLYWADA------KLSVIGSIR-L 4074
Cdd:cd14953   148 ADTGNHRirKITPDgvvttvagtggagyAGDGPATAAQFN----NPTGVAVDAAG-NLYVADRgnhrirKITPDGVVTtV 222
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 126012562 4075 NGTDPIVAAD----SKRGLSHPFSIDVFEDyiyGVTYI----NNRVFKI 4115
Cdd:cd14953   223 AGTGTAGFSGdggaTAAQLNNPTGVAVDAA---GNLYVadsgNHRIRKI 268
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
140-187 1.93e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 46.22  E-value: 1.93e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 126012562  140 QLQadGKTCKDFDECSVYG-TCSQLCTNTDGSFICGCVEGYLLQPDNRS 187
Cdd:cd01475   178 KFQ--GKICVVPDLCATLShVCQQVCISTPGSYLCACTEGYALLEDNKT 224
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2907-2939 2.11e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 41.47  E-value: 2.11e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 126012562  2907 SSQFLCSSGRCVAEALLCNGQDDCGDSSDERGC 2939
Cdd:pfam00057    5 PNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1310-1467 2.43e-04

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 46.04  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1310 ALYWTDVVEDKIYRgKLLDNGALTSFE-----------------VVIQYG---------------LATPEG--------L 1349
Cdd:COG3386    20 RLYWVDIPGGRIHR-YDPDGGAVEVFAepsgrpnglafdpdgrlLVADHGrglvrfdpadgevtvLADEYGkplnrpndG 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1350 AVDWiAGNIYWVESNLDQIE--VAKLDGTLRTTLLAGDIEHPRAIALDPRDGILFWTDWDASlpRIEAASMSGAG----R 1423
Cdd:COG3386    99 VVDP-DGRLYFTDMGEYLPTgaLYRVDPDGSLRVLADGLTFPNGIAFSPDGRTLYVADTGAG--RIYRFDLDADGtlgnR 175
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 126012562 1424 RTVHRETGSGGWPNGLTVDylekrilwidaRSDAIYSARYDGSG 1467
Cdd:COG3386   176 RVFADLPDGPGGPDGLAVD-----------ADGNLWVALWGGGG 208
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3058-3214 2.48e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 46.12  E-value: 2.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3058 NAVALDFDYReqmIYWTDVTT--------QGSMIRRMHLNGSNVQvlhrtGLSNPDGLAVDwVGGNLYWCDKGRDTIEVS 3129
Cdd:cd14956    16 RGIAVDADDN---VYVADARNgriqvfdkDGTFLRRFGTTGDGPG-----QFGRPRGLAVD-KDGWLYVADYWGDRIQVF 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3130 KLNGAYRTVLVSSG-----LREPRALVVDVqNGYLYWTDWGDHSlIGRIGMDGSsrsvIVDT---------KITWPNGLT 3195
Cdd:cd14956    87 TLTGELQTIGGSSGsgpgqFNAPRGVAVDA-DGNLYVADFGNQR-IQKFDPDGS----FLRQwggtgiepgSFNYPRGVA 160
                         170
                  ....*....|....*....
gi 126012562 3196 LDYVtERIYWADAREDYIE 3214
Cdd:cd14956   161 VDPD-GTLYVADTYNDRIQ 178
LDLa smart00192
Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density ...
71-104 2.68e-04

Low-density lipoprotein receptor domain class A; Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.


Pssm-ID: 197566  Cd Length: 33  Bit Score: 41.08  E-value: 2.68e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 126012562     71 RCQPNEHNCLGTElCVPMSRLCNGVQDCMDGSDE 104
Cdd:smart00192    1 TCPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1401-1443 3.00e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 3.00e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 126012562  1401 LFWTDWdaSL-PRIEAASMSGAGRRTVHreTGSGGWPNGLTVDY 1443
Cdd:pfam00058    3 LYWTDS--SLrASISSADLNGSDRKTLF--TDDLQHPNAIAVDP 42
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2564-2600 3.03e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.03e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2564 RRCKKTFRQCSNGRCVSNMLWCNGADDCGDGSDEIPC 2600
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
1714-1750 3.06e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.99  E-value: 3.06e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 126012562  1714 GKLYWTDGDN---ISMANMDGSNRTLLFS--GQKgPVGLAID 1750
Cdd:pfam00058    1 GRLYWTDSSLrasISSADLNGSDRKTLFTddLQH-PNAIAVD 41
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
3695-3731 3.14e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 126012562 3695 CPPNRpFRCKNDRvCLWIGRQCDGTDNCGDGTDEEDC 3731
Cdd:cd00112     1 CPPNE-FRCANGR-CIPSSWVCDGEDDCGDGSDEENC 35
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3746-3776 3.28e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.28e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 126012562  3746 EFLCRNQRCLSSSLRCNMFDDCGDGSDEEDC 3776
Cdd:pfam00057    7 EFQCGSGECIPRSWVCDGDPDCGDGSDEENC 37
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3952-4053 3.35e-04

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 45.66  E-value: 3.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3952 LNISGLKMPRGIAIDwVAGNVYWTDSGRD-VIEVAQmkGENRKTLI--SGMiDEPHAIVVDPlRGTMYWSDWGNHPKIET 4028
Cdd:cd14952     4 LPFTGLDGPGGVAVD-AAGNVYVADSGNNrVLKLAA--GSTTQTVLpfTGL-YQPQGVAVDA-AGTVYVTDFGNNRVLKL 78
                          90       100
                  ....*....|....*....|....*
gi 126012562 4029 AAmDGTLRETLVQDNIQWPTGLAVD 4053
Cdd:cd14952    79 AA-GSTTQTVLPFTGLNDPTGVAVD 102
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
1850-1886 3.59e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 40.69  E-value: 3.59e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  1850 CSVNNGDCSQLCLPTSEtTRSCMCTAGYSLRSGQQAC 1886
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPG-GYTCSCPEGYELQDDGRTC 36
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3101-3202 3.70e-04

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 45.77  E-value: 3.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3101 LSNPDGLAVDwVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSG-----LREPRALVVDvQNGYLYWTDWGDHSlIGRIGM 3175
Cdd:cd05819    54 FNEPAGVAVD-SDGNLYVADTGNHRIQKFDPDGNFLASFGGSGdgdgeFNGPRGIAVD-SSGNIYVADTGNHR-IQKFDP 130
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 126012562 3176 DGSSRSVI-----VDTKITWPNGLTLD-----YVTER 3202
Cdd:cd05819   131 DGEFLTTFgsggsGPGQFNGPTGVAVDsdgniYVADT 167
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
3332-3365 3.84e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 40.69  E-value: 3.84e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562  3332 SNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDE 3365
Cdd:pfam00057    1 STCSPNEFQCGSGECIPRSWVCDGDPDCGDGSDE 34
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
72-104 3.98e-04

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 40.65  E-value: 3.98e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 126012562   72 CQPNEHNClGTELCVPMSRLCNGVQDCMDGSDE 104
Cdd:cd00112     1 CPPNEFRC-ANGRCIPSSWVCDGEDDCGDGSDE 32
NHL_like_3 cd14956
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3957-4023 4.17e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271326 [Multi-domain]  Cd Length: 274  Bit Score: 45.74  E-value: 4.17e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLIS-----GMIDEPHAIVVDPlRGTMYWSDWGNH 4023
Cdd:cd14956   200 FNYPYGIAID-PDGNVFVADFGNNRIQKFTADGTFLTSWGSpgtgpGQFKNPWGVVVDA-DGTVYVADSNNN 269
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3957-4063 4.36e-04

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 45.36  E-value: 4.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3957 LKMPRGIAIDwVAGNVYWTDSGRDVIEVAQMKGENRKTLISGMIDE-----PHAIVVDPlRGTMYWSDWGNHpKIETAAM 4031
Cdd:cd14963   147 LSYPNGIAVD-EDGNIYVADSGNGRIQVFDKNGKFIKELNGSPDGKsgfvnPRGIAVDP-DGNLYVVDNLSH-RVYVFDE 223
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 126012562 4032 DGTLRETLVQ---DNIQW--PTGLAVDyHNERLYWAD 4063
Cdd:cd14963   224 QGKELFTFGGrgkDDGQFnlPNGLFID-DDGRLYVTD 259
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3950-4053 4.81e-04

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 45.28  E-value: 4.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3950 THLNISGLKMPRGIAIDwVAGNVYWTDSGRD-VIEVAQmkGENRKTLIS-GMIDEPHAIVVDPlRGTMYWSDWGNHPKIE 4027
Cdd:cd14952   128 TVLPFTGLSNPDGVAVD-GAGNVYVTDTGNNrVLKLAA--GSTTQTVLPfTGLNSPSGVAVDT-AGNVYVTDHGNNRVLK 203
                          90       100
                  ....*....|....*....|....*.
gi 126012562 4028 TAAMDGTLrETLVQDNIQWPTGLAVD 4053
Cdd:cd14952   204 LAAGSTTP-TVLPFTGLNGPLGVAVD 228
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3114-3153 5.10e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 40.22  E-value: 5.10e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  3114 GNLYWCDKG-RDTIEVSKLNGAYRTVLVSSGLREPRALVVD 3153
Cdd:pfam00058    1 GRLYWTDSSlRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
1646-1764 5.41e-04

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 44.89  E-value: 5.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1646 GTGVETVVS-ADLPNAHGLAVDwVSRNLFWTSYDTNkkqiNVARLDGSFKNAVV---QGLEQPHGLVVHPlRGKLYWTDG 1721
Cdd:cd14952    81 GSTTQTVLPfTGLNDPTGVAVD-AAGNVYVADTGNN----RVLKLAAGSNTQTVlpfTGLSNPDGVAVDG-AGNVYVTDT 154
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 126012562 1722 DN---ISMANMDGSNRTLLFSGQKGPVGLAIDfPESKLYWISSGNH 1764
Cdd:cd14952   155 GNnrvLKLAAGSTTQTVLPFTGLNSPSGVAVD-TAGNVYVTDHGNN 199
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
613-772 6.36e-04

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 44.69  E-value: 6.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  613 GDNLYWTDDGPKkTISVARLEKAAQTRkTLIEGKmtHPRAIVVDPLNGWMYWTDWEE------DPKDsrrGRLERAWMDG 686
Cdd:COG3391    79 GRRLYVANSGSG-RVSVIDLATGKVVA-TIPVGG--GPRGLAVDPDGGRLYVADSGNgrvsviDTAT---GKVVATIPVG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  687 ShrdifvtsktvlWPNGLSLDIPAGRLYWVDAFYDRIETIL--LNGTDRKIVYEGPELNHAFGLC--HHGNYLFWTEYRS 762
Cdd:COG3391   152 A------------GPHGIAVDPDGKRLYVANSGSNTVSVIVsvIDTATGKVVATIPVGGGPVGVAvsPDGRRLYVANRGS 219
                         170
                  ....*....|
gi 126012562  763 GSVYRLERGV 772
Cdd:COG3391   220 NTSNGGSNTV 229
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2522-2557 6.40e-04

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 39.92  E-value: 6.40e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 126012562  2522 SSCRAqDEFECANGECINFSLTCDGVPHCKDKSDEK 2557
Cdd:pfam00057    1 STCSP-NEFQCGSGECIPRSWVCDGDPDCGDGSDEE 35
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2482-2517 7.58e-04

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 39.92  E-value: 7.58e-04
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 126012562  2482 CRINNGGCQDLCLLTHQGHVnCSCRGGRILQDD-LTC 2517
Cdd:pfam14670    1 CSVNNGGCSHLCLNTPGGYT-CSCPEGYELQDDgRTC 36
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
3071-3111 8.67e-04

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 39.84  E-value: 8.67e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  3071 IYWTDVTTQGSmIRRMHLNGSNVQVLHRTGLSNPDGLAVDW 3111
Cdd:pfam00058    3 LYWTDSSLRAS-ISSADLNGSDRKTLFTDDLQHPNAIAVDP 42
NHL cd05819
NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in ...
3101-3200 1.09e-03

NHL repeat unit of beta-propeller proteins; The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.


Pssm-ID: 271320 [Multi-domain]  Cd Length: 269  Bit Score: 44.23  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3101 LSNPDGLAVDwVGGNLYWCDKGRDTIEVSKLNGAYRTVLVSSG-----LREPRALVVDvQNGYLYWTDWGDHSlIGRIGM 3175
Cdd:cd05819     7 LNNPQGIAVD-SSGNIYVADTGNNRIQVFDPDGNFITSFGSFGsgdgqFNEPAGVAVD-SDGNLYVADTGNHR-IQKFDP 83
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 126012562 3176 DGSSRSVIV-----DTKITWPNGLTLD-----YVT 3200
Cdd:cd05819    84 DGNFLASFGgsgdgDGEFNGPRGIAVDssgniYVA 118
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
2964-2985 1.12e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 38.93  E-value: 1.12e-03
                           10        20
                   ....*....|....*....|..
gi 126012562  2964 KCRCRPGFRLKDDGRTCADVDE 2985
Cdd:pfam12662    1 TCSCPPGYQLDPDGRTCVDIDE 22
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
2666-2688 1.47e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 38.73  E-value: 1.47e-03
                          10        20
                  ....*....|....*....|...
gi 126012562 2666 CYAPSWVCDGANDCGDYSDERDC 2688
Cdd:cd00112    13 CIPSSWVCDGEDDCGDGSDEENC 35
NHL_like_4 cd14955
Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and ...
3958-4114 1.48e-03

Uncharacterized NHL-repeat domain in bacterial and archaeal proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271325 [Multi-domain]  Cd Length: 279  Bit Score: 43.72  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3958 KMPRGIAIDwVAGNVYWTDSGRDVIEvaqmKGENRKTLIS---------GMIDEPHAIVVDPlRGTMYWSDWGNHpKIET 4028
Cdd:cd14955   110 NSPSGIAVD-SAGNVYVTDSGNNRIQ----KFDSSGTFITkwgsfgsgdGQFNSPTGIAVDS-AGNVYVADTGNN-RIQK 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4029 AAMDGTL---RETLVQDNIQ--WPTGLAVDyHNERLYWADAKLSVIGSIRLNGTdpivaADSKRG--------LSHPFSI 4095
Cdd:cd14955   183 FTSTGTFltkWGSEGSGDGQfnAPYGIAVD-SAGNVYVADTGNNRIQKFDSSGT-----FITKWGsegsgdgqFNSPSGI 256
                         170       180
                  ....*....|....*....|
gi 126012562 4096 DV-FEDYIYGVTYINNRVFK 4114
Cdd:cd14955   257 AVdSAGNVYVADSGNNRIQK 276
NHL_PKND_like cd14952
NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein ...
3054-3167 1.86e-03

NHL repeat domain of the protein kinase PknD; PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271322 [Multi-domain]  Cd Length: 247  Bit Score: 43.35  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3054 QGLNN--AVALDfdyREQMIYWTDVTTQgsmiRRMHLN-GSNVQ-VLHRTGLSNPDGLAVDwVGGNLYWCDKGRDtiEVS 3129
Cdd:cd14952   133 TGLSNpdGVAVD---GAGNVYVTDTGNN----RVLKLAaGSTTQtVLPFTGLNSPSGVAVD-TAGNVYVTDHGNN--RVL 202
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 126012562 3130 KL--NGAYRTVLVSSGLREPRALVVDVQnGYLYWTDWGDH 3167
Cdd:cd14952   203 KLaaGSTTPTVLPFTGLNGPLGVAVDAA-GNVYVADRGND 241
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
2951-2980 1.87e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 38.76  E-value: 1.87e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 126012562  2951 GCSQDCEDLKIGFKCRCRPGFRLKDDGRTC 2980
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
NHL_like_6 cd14962
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
1276-1460 2.11e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271332 [Multi-domain]  Cd Length: 271  Bit Score: 43.34  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1276 RHEIRRIDLHKGDYSVLVPGLRNT------IALDfhlSQSALYWTDVVEDKIYRgklLDNGALtsFEVVIQYGLAT--PE 1347
Cdd:cd14962    32 RGAVFVFDLPNGKVFVIGNAGPNRfvspigVAID---ANGNLYVSDAELGKVFV---FDRDGK--FLRAIGAGALFkrPT 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1348 GLAVDWIAGNIYWVESNLDQIEVAKLDGTLRTTL-----LAGDIEHPRAIALDpRDGILFWTdwDASLPRIEAASMSGAG 1422
Cdd:cd14962   104 GIAVDPAGKRLYVVDTLAHKVKVFDLDGRLLFDIgkrgsGPGEFNLPTDLAVD-RDGNLYVT--DTMNFRVQIFDADGKF 180
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 126012562 1423 RRT---VHRETGSGGWPNGLTVDYlEKRILWIDARSDA--IYS 1460
Cdd:cd14962   181 LRSfgeRGDGPGSFARPKGIAVDS-EGNIYVVDAAFDNvqIFN 222
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
119-148 2.15e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 38.38  E-value: 2.15e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 126012562   119 GCQHHCVPTLDGPTCYCNSSFQLQADGKTC 148
Cdd:pfam14670    7 GCSHLCLNTPGGYTCSCPEGYELQDDGRTC 36
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
2323-2368 2.89e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 38.35  E-value: 2.89e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*.
gi 126012562   2323 ETVITmSGDDHPRAFVLDECQNLMFWTNWNeqHPSIMRAALSGANV 2368
Cdd:smart00135    1 RTLLS-SGLGHPNGLAVDWIEGRLYWTDWG--LDVIEVANLDGTNR 43
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
607-774 2.91e-03

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 42.96  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  607 VAVDWMGdNLYWTD-DGPKKTISVARLEKAAQTRkTLIEGkMTHPRAIVVDPLNGWMYWTdweedpkDSRRGRLERAWMD 685
Cdd:COG3386    98 GVVDPDG-RLYFTDmGEYLPTGALYRVDPDGSLR-VLADG-LTFPNGIAFSPDGRTLYVA-------DTGAGRIYRFDLD 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562  686 G----SHRDIFVT-SKTVLWPNGLSLDiPAGRLYWVDAFYDRIETILLNGT-DRKIvyEGPEL---NHAFGLcHHGNYLF 756
Cdd:COG3386   168 AdgtlGNRRVFADlPDGPGGPDGLAVD-ADGNLWVALWGGGGVVRFDPDGElLGRI--ELPERrptNVAFGG-PDLRTLY 243
                         170       180
                  ....*....|....*....|..
gi 126012562  757 WTEYRS----GSVYRLERGVGG 774
Cdd:COG3386   244 VTTARSlplaGALFRVRVDVPG 265
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
2389-2428 3.02e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 38.29  E-value: 3.02e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562  2389 EKLYFSDATLD-KIERCEYDGSHRYVILKSEPVHPFGLAVY 2428
Cdd:pfam00058    1 GRLYWTDSSLRaSISSADLNGSDRKTLFTDDLQHPNAIAVD 41
FXa_inhibition pfam14670
Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is ...
486-519 4.07e-03

Coagulation Factor Xa inhibitory site; This short domain on coagulation enzyme factor Xa is found to be the target for a potent inhibitor of coagulation, TAK-442.


Pssm-ID: 464251 [Multi-domain]  Cd Length: 36  Bit Score: 37.61  E-value: 4.07e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 126012562   486 PGGCSDICLlaNSHKARTCRCRSGFSLGSDGKSC 519
Cdd:pfam14670    5 NGGCSHLCL--NTPGGYTCSCPEGYELQDDGRTC 36
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
1625-1775 4.43e-03

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 42.19  E-value: 4.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1625 REQRVYWSDVRTQAIKRAFINGTGVETVVSADlPNAHGLAVD-----WV---SRNLFWTSYDTNKKQINVARLDgsfkna 1696
Cdd:COG3386    17 PDGRLYWVDIPGGRIHRYDPDGGAVEVFAEPS-GRPNGLAFDpdgrlLVadhGRGLVRFDPADGEVTVLADEYG------ 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 1697 vvQGLEQPHGLVVHPlRGKLYWTDgdnisMANMDGSNR----------TLLFSGQKGPVGLAIDFPESKLYWISSGNHTI 1766
Cdd:COG3386    90 --KPLNRPNDGVVDP-DGRLYFTD-----MGEYLPTGAlyrvdpdgslRVLADGLTFPNGIAFSPDGRTLYVADTGAGRI 161

                  ....*....
gi 126012562 1767 NRCNLDGSG 1775
Cdd:COG3386   162 YRFDLDADG 170
Ldl_recept_a pfam00057
Low-density lipoprotein receptor domain class A;
2662-2688 5.10e-03

Low-density lipoprotein receptor domain class A;


Pssm-ID: 395011  Cd Length: 37  Bit Score: 37.61  E-value: 5.10e-03
                           10        20
                   ....*....|....*....|....*..
gi 126012562  2662 RTSLCYAPSWVCDGANDCGDYSDERDC 2688
Cdd:pfam00057   11 GSGECIPRSWVCDGDPDCGDGSDEENC 37
LY smart00135
Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) ...
1916-1956 5.65e-03

Low-density lipoprotein-receptor YWTD domain; Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.


Pssm-ID: 214531 [Multi-domain]  Cd Length: 43  Bit Score: 37.58  E-value: 5.65e-03
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|.
gi 126012562   1916 VPVSGTSLAVGIDFHAENDTIYWVDMGLSTISRAKRDQTWR 1956
Cdd:smart00135    3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
Ldl_recept_b pfam00058
Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif ...
335-375 6.46e-03

Low-density lipoprotein receptor repeat class B; This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure.


Pssm-ID: 459654  Cd Length: 42  Bit Score: 37.14  E-value: 6.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 126012562   335 GKVFFTDYGQIPKVERCDMDGQNRTKLVDSKIVFPHGITLD 375
Cdd:pfam00058    1 GRLYWTDSSLRASISSADLNGSDRKTLFTDDLQHPNAIAVD 41
YvrE COG3386
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase ...
3898-4115 7.61e-03

Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]; Sugar lactone lactonase YvrE is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 442613 [Multi-domain]  Cd Length: 266  Bit Score: 41.42  E-value: 7.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3898 ESVRIDAmdvhvkAGRVYWTNWHTGTIsyrslppaappttsnrHRRQIDRGVTHLNISGLKMPRGIAIDWvAGNVYWTDS 3977
Cdd:COG3386    11 EGPVWDP------DGRLYWVDIPGGRI----------------HRYDPDGGAVEVFAEPSGRPNGLAFDP-DGRLLVADH 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3978 GRDVIEVAQMKGEnRKTLISGmIDEPHA----IVVDPlRGTMYWSDWGNHPKieTAAM-----DGTLRetLVQDNIQWPT 4048
Cdd:COG3386    68 GRGLVRFDPADGE-VTVLADE-YGKPLNrpndGVVDP-DGRLYFTDMGEYLP--TGALyrvdpDGSLR--VLADGLTFPN 140
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 126012562 4049 GLAVDYHNERLYWADAKLSVIGSIRLNGTDPI----VAADSKRGLSHP--FSIDVfEDYIYGVTYINNRVFKI 4115
Cdd:COG3386   141 GIAFSPDGRTLYVADTGAGRIYRFDLDADGTLgnrrVFADLPDGPGGPdgLAVDA-DGNLWVALWGGGGVVRF 212
NHL_like_5 cd14963
Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) ...
3956-4112 7.61e-03

Uncharacterized NHL-repeat domain in bacterial proteins; The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.


Pssm-ID: 271333 [Multi-domain]  Cd Length: 268  Bit Score: 41.51  E-value: 7.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 3956 GLKMPRGIAIDWvaGNVYWTDSGRDVIEVAQMKGENRKTL-----ISGMIDEPHAIVVDPlRGTMYWSDWGNHpKIETAA 4030
Cdd:cd14963     8 PLNKPMGVAVSD--GRIYVADTNNHRVQVFDYEGKFKKSFggpgtGPGEFKYPYGIAVDS-DGNIYVADLYNG-RIQVFD 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 126012562 4031 MDGTLRETLVQD----NIQWPTGLAVDyhNERLYWADAKLSVIGSIRLNGTD--PIVAADSKRG-LSHPFSIDVFED-YI 4102
Cdd:cd14963    84 PDGKFLKYFPEKkdrvKLISPAGLAID--DGKLYVSDVKKHKVIVFDLEGKLllEFGKPGSEPGeLSYPNGIAVDEDgNI 161
                         170
                  ....*....|
gi 126012562 4103 YGVTYINNRV 4112
Cdd:cd14963   162 YVADSGNGRI 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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