NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1248940890|gb|ATG84310|]
View 

xanthine dehydrogenase/oxidase-like protein, partial [Bombus vancouverensis nearcticus]

Protein Classification

xanthine dehydrogenase family protein molybdopterin-binding subunit( domain architecture ID 1001825)

xanthine dehydrogenase family protein molybdopterin-binding subunit is part of an oxidase/dehydrogenase complex acting on one or more of a variety of substrates

Gene Ontology:  GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MoCoBD_1 super family cl47763
Molybdopterin cofactor-binding domain;
2-66 1.58e-10

Molybdopterin cofactor-binding domain;


The actual alignment was detected with superfamily member pfam02738:

Pssm-ID: 460671 [Multi-domain]  Cd Length: 244  Bit Score: 54.38  E-value: 1.58e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248940890   2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNefHAPLV----ALHINSCYD 66
Cdd:pfam02738 122 KWVLDREEDMLATGHRHPFLIKYKVGADKDGKILALDVDLYADGGAYAD--LSPAVperaLSHLDGPYK 188
 
Name Accession Description Interval E-value
MoCoBD_1 pfam02738
Molybdopterin cofactor-binding domain;
2-66 1.58e-10

Molybdopterin cofactor-binding domain;


Pssm-ID: 460671 [Multi-domain]  Cd Length: 244  Bit Score: 54.38  E-value: 1.58e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248940890   2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNefHAPLV----ALHINSCYD 66
Cdd:pfam02738 122 KWVLDREEDMLATGHRHPFLIKYKVGADKDGKILALDVDLYADGGAYAD--LSPAVperaLSHLDGPYK 188
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
 2-66 1.69e-08

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 49.07  E-value: 1.69e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248940890   2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAG--CNFNEFHAPLVALHINSCYD 66
Cdd:COG1529   269 KLVLTREEDFLADTHRHATVQRVRLGADKDGKITALRHDVVADTGayASFGEAVLPLGATMATGPYA 335
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 2-51 2.37e-04

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 37.30  E-value: 2.37e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1248940890    2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNE 51
Cdd:TIGR02969  825 RCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDE 874
PLN02906 PLN02906
xanthine dehydrogenase
 2-66 2.41e-04

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 37.37  E-value: 2.41e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248940890    2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNEFHAPL--VALHINSCYD 66
Cdd:PLN02906   820 KLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLerAMFHSDNVYE 886
 
Name Accession Description Interval E-value
MoCoBD_1 pfam02738
Molybdopterin cofactor-binding domain;
2-66 1.58e-10

Molybdopterin cofactor-binding domain;


Pssm-ID: 460671 [Multi-domain]  Cd Length: 244  Bit Score: 54.38  E-value: 1.58e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248940890   2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNefHAPLV----ALHINSCYD 66
Cdd:pfam02738 122 KWVLDREEDMLATGHRHPFLIKYKVGADKDGKILALDVDLYADGGAYAD--LSPAVperaLSHLDGPYK 188
CoxL COG1529
Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; ...
 2-66 1.69e-08

Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit [Energy production and conversion]; Aldehyde, CO or xanthine dehydrogenase, Mo-binding subunit is part of the Pathway/BioSystem: Non-phosphorylated Entner-Doudoroff pathway


Pssm-ID: 441138 [Multi-domain]  Cd Length: 741  Bit Score: 49.07  E-value: 1.69e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248940890   2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAG--CNFNEFHAPLVALHINSCYD 66
Cdd:COG1529   269 KLVLTREEDFLADTHRHATVQRVRLGADKDGKITALRHDVVADTGayASFGEAVLPLGATMATGPYA 335
mam_aldehyde_ox TIGR02969
aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, ...
 2-51 2.37e-04

aldehyde oxidase; Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.


Pssm-ID: 132014 [Multi-domain]  Cd Length: 1330  Bit Score: 37.30  E-value: 2.37e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1248940890    2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNE 51
Cdd:TIGR02969  825 RCTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDE 874
PLN02906 PLN02906
xanthine dehydrogenase
 2-66 2.41e-04

xanthine dehydrogenase


Pssm-ID: 215491 [Multi-domain]  Cd Length: 1319  Bit Score: 37.37  E-value: 2.41e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1248940890    2 RFVMSIESNMQAMGKRYDTRQEYEVGVDDDGRIQYLNANYWSNAGCNFNEFHAPL--VALHINSCYD 66
Cdd:PLN02906   820 KLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLerAMFHSDNVYE 886
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH