NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1248562702|ref|WP_096759555|]
View 

MULTISPECIES: septal ring assembly protein ZapB [Lelliottia]

Protein Classification

upstream stimulatory factor 2( domain architecture ID 10015110)

upstream stimulatory factor 2 (USF2) acts as transcription factor that binds to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3') that is found in a variety of viral and cellular promoters

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 3-81 3.44e-27

septal ring assembly protein ZapB; Provisional


:

Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 93.99  E-value: 3.44e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAQNGREELERENHQLREQQSGWQDRLQALLGRMEEV 81
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
 
Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 3-81 3.44e-27

septal ring assembly protein ZapB; Provisional


Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 93.99  E-value: 3.44e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAQNGREELERENHQLREQQSGWQDRLQALLGRMEEV 81
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
ZapB COG3074
Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 3-81 3.18e-17

Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442308 [Multi-domain]  Cd Length: 79  Bit Score: 68.85  E-value: 3.18e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAQNGREELERENHQLREQQSGWQDRLQALLGRMEEV 81
Cdd:COG3074    1 MSLELLEELEAKVQQAVDTIELLQMEVEELKEKNEELEQENEELQSENEELQSENEQLKTENAEWQERIRSLLGKIDEV 79
ZapB pfam06005
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ...
 3-80 2.42e-13

Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.


Pssm-ID: 428718 [Multi-domain]  Cd Length: 71  Bit Score: 58.82  E-value: 2.42e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEvhsaqngREELERENHQLREQQSGWQDRLQALLGRMEE 80
Cdd:pfam06005  1 MSLELLEQLETKIQAAVDTIALLQMENEELKEENEELKEE-------ANELEEENQQLKQERNQWQERIRGLLGKLDE 71
 
Name Accession Description Interval E-value
PRK15422 PRK15422
septal ring assembly protein ZapB; Provisional
 3-81 3.44e-27

septal ring assembly protein ZapB; Provisional


Pssm-ID: 185320 [Multi-domain]  Cd Length: 79  Bit Score: 93.99  E-value: 3.44e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAQNGREELERENHQLREQQSGWQDRLQALLGRMEEV 81
Cdd:PRK15422   1 MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV 79
ZapB COG3074
Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 3-81 3.18e-17

Cell division protein ZapB, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442308 [Multi-domain]  Cd Length: 79  Bit Score: 68.85  E-value: 3.18e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAQNGREELERENHQLREQQSGWQDRLQALLGRMEEV 81
Cdd:COG3074    1 MSLELLEELEAKVQQAVDTIELLQMEVEELKEKNEELEQENEELQSENEELQSENEQLKTENAEWQERIRSLLGKIDEV 79
ZapB pfam06005
Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is ...
 3-80 2.42e-13

Cell division protein ZapB; ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation.


Pssm-ID: 428718 [Multi-domain]  Cd Length: 71  Bit Score: 58.82  E-value: 2.42e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1248562702  3 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNALAQEvhsaqngREELERENHQLREQQSGWQDRLQALLGRMEE 80
Cdd:pfam06005  1 MSLELLEQLETKIQAAVDTIALLQMENEELKEENEELKEE-------ANELEEENQQLKQERNQWQERIRGLLGKLDE 71
MreC COG1792
Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome ...
 13-63 3.21e-04

Cell shape-determining protein MreC [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 441397  Cd Length: 282  Bit Score: 37.17  E-value: 3.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1248562702  13 SKVQQAIDTITLLQMEIEELKEKNNALAQEVHSAqngrEELERENHQLREQ 63
Cdd:COG1792    61 SGVSDNFRSLFNLREENERLKEENAELRAELQRL----EELEAENARLREL 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH