NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|124484816|ref|YP_001031198|]
View 

NADH dehydrogenase subunit 4L (mitochondrion) [Amphimedon queenslandica]

Protein Classification

Na(+)/H(+) antiporter subunit C( domain architecture ID 10009615)

Na(+)/H(+) antiporter subunit C (MrpC) is part of a heterooligomeric complex together with MrpA, MrpB, MrpD, MrpE, MrpF and MrpG, which is involved in resistance to Na(+) and excretion of Li(+) and Na(+)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.90e-24

NADH dehydrogenase subunit 4L; Provisional


:

Pssm-ID: 177231  Cd Length: 99  Bit Score: 87.78  E-value: 2.90e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00180  2 YYEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVA 81

                        90
                ....*....|....*...
gi 124484816 81 FYVTRGSINVKSLNVLRG 98
Cdd:MTH00180 82 YYRIRGTIAVKSLNLLRG 99
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.90e-24

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 87.78  E-value: 2.90e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00180  2 YYEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVA 81

                        90
                ....*....|....*...
gi 124484816 81 FYVTRGSINVKSLNVLRG 98
Cdd:MTH00180 82 YYRIRGTIAVKSLNLLRG 99
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-98 4.91e-15

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 64.31  E-value: 4.91e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNsFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:COG0713   3 LEHYLILAAILFAIGLYGVLTRRN-LIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVA 81

                        90
                ....*....|....*...
gi 124484816 81 FYVTRGSINVKSLNVLRG 98
Cdd:COG0713  82 LYRNRGTIDVDDLNELKG 99
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-98 3.39e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 49.48  E-value: 3.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816   3 VIYIGAILIFAIGVLGVILNRNSfIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVAFY 82
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLLRRNL-LRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|....*.
gi 124484816  83 VTRGSINVKSLNVLRG 98
Cdd:pfam00420 80 RTHGTDDVDSLNLLKG 95
 
Name Accession Description Interval E-value
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 1-98 2.90e-24

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 87.78  E-value: 2.90e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00180  2 YYEYLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVA 81

                        90
                ....*....|....*...
gi 124484816 81 FYVTRGSINVKSLNVLRG 98
Cdd:MTH00180 82 YYRIRGTIAVKSLNLLRG 99
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-98 4.91e-15

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 64.31  E-value: 4.91e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNsFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:COG0713   3 LEHYLILAAILFAIGLYGVLTRRN-LIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVA 81

                        90
                ....*....|....*...
gi 124484816 81 FYVTRGSINVKSLNVLRG 98
Cdd:COG0713  82 LYRNRGTIDVDDLNELKG 99
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
8-98 6.95e-15

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 64.04  E-value: 6.95e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816   8 AILIFAIGVLGVILNRNSfIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVAFYVTRGS 87
Cdd:PRK05715  11 AAILFCIGLVGLLLRRNA-IVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGT 89

                         90
                 ....*....|.
gi 124484816  88 INVKSLNVLRG 98
Cdd:PRK05715  90 IDVDDLNELKG 100
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 6-98 1.63e-12

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 58.15  E-value: 1.63e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  6 IGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVAFYVTR 85
Cdd:MTH00001  7 ILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIR 86

                        90
                ....*....|...
gi 124484816 86 GSINVKSLNVLRG 98
Cdd:MTH00001 87 GTISLKSLNSLRG 99
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
3-98 3.39e-09

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 49.48  E-value: 3.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816   3 VIYIGAILIFAIGVLGVILNRNSfIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVAFY 82
Cdd:pfam00420  1 AYLLLSGLLFLIGLYGLLLRRNL-LRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIY 79

                         90
                 ....*....|....*.
gi 124484816  83 VTRGSINVKSLNVLRG 98
Cdd:pfam00420 80 RTHGTDDVDSLNLLKG 95
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-97 1.14e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 47.92  E-value: 1.14e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*..
gi 124484816 81 FYVTRGSINVKSLNVLR 97
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQ 97
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 8-98 2.43e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 47.22  E-value: 2.43e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  8 AILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVAFYVTRGS 87
Cdd:MTH00192  9 SIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGT 88

                        90
                ....*....|.
gi 124484816 88 INVKSLNVLRG 98
Cdd:MTH00192 89 ITIKALNLLRG 99
ndhE CHL00015
NADH dehydrogenase subunit 4L
 2-97 5.57e-08

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 46.54  E-value: 5.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816   2 SVIYIGAILiFAIGVLGVILNRNsFIIMLMSMELMYLGVVLLMVLITSAFD--DMTGVIWAIAIITVVAADSAIGLSMLV 79
Cdd:CHL00015   5 HVLILSAYL-FSIGIYGLITSRN-MVRALMCLELILNAVNINFVTFSDFFDsrQLKGDIFSIFVIAIAAAEAAIGLAIVS 82

                         90
                 ....*....|....*...
gi 124484816  80 AFYVTRGSINVKSLNVLR 97
Cdd:CHL00015  83 SIYRNRKSTRINQSNLLK 100
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 4.48e-05

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 38.75  E-value: 4.48e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 124484816 81 FYVTRGSINVKSLNVLR 97
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-97 6.25e-05

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 38.43  E-value: 6.25e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124484816  1 MSVIYIGAILIFAIGVLGVILNRNSFIIMLMSMELMYLGVVLLMVLITSAFDDMTGVIWAIAIITVVAADSAIGLSMLVA 80
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*..
gi 124484816 81 FYVTRGSINVKSLNVLR 97
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQ 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH