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Conserved domains on  [gi|1244552400|gb|ATD52904|]
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ATP synthase F0 subunit 6 (mitochondrion) [Thylacinus cynocephalus]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009564)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 5.33e-124

ATP synthase F0 subunit 6; Validated


:

Pssm-ID: 177163  Cd Length: 226  Bit Score: 350.41  E-value: 5.33e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIA 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  81 STNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRL 160
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 161 TANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 5.33e-124

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 350.41  E-value: 5.33e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIA 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  81 STNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRL 160
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 161 TANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-225 2.11e-52

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 168.54  E-value: 2.11e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   5 LFASFICP--NIMGLSTLPIIIMLPCLMFTAP----KRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILF 78
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLISsslsRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  79 IASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAV 158
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552400 159 RLTANITAGHLLMHLIGSATLALASINIMisSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 1.16e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 136.38  E-value: 1.16e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  65 GRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552400 145 ETISLFIQPIALAVRLTANITAGHLLMHLIGSATLALASINIMISsitFTILLLLTILELAVAIIQAYVFTLLVSLYL 222
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLP---LLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
14-223 3.19e-38

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 131.84  E-value: 3.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  14 IMGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMS-MHSKLGRTWSLMLISLILFIASTNLLGLL---P 89
Cdd:pfam00119   2 LMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  90 YSFTPTTQLSMNLGMAIPLWMGTVILGLRKK-PKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRLTANITAGH 168
Cdd:pfam00119  82 GGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGH 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1244552400 169 LLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLH 223
Cdd:pfam00119 162 LLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-224 1.57e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 96.30  E-value: 1.57e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  39 PNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLR 118
Cdd:COG0356    28 PGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIK 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 119 KK-PKASLAHFLPQGTPtPLIPMLIIIETISLFIQPIALAVRLTANITAGHLLMHLIGSATLALASINIMIssitfTILL 197
Cdd:COG0356   108 KKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSL-----LLPV 181

                         170       180
                  ....*....|....*....|....*..
gi 1244552400 198 LLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:COG0356   182 AWTAFELLVGFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 5.33e-124

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 350.41  E-value: 5.33e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIA 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  81 STNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRL 160
Cdd:MTH00101   81 STNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRL 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 161 TANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00101  161 TANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 2.76e-87

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 257.45  E-value: 2.76e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAPK-RWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFI 79
Cdd:MTH00120    1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKnRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  80 ASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVR 159
Cdd:MTH00120   81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552400 160 LTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00120  161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-225 2.84e-79

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 237.17  E-value: 2.84e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAP-KRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFI 79
Cdd:MTH00073    1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPtNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  80 ASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVR 159
Cdd:MTH00073   81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 160 LTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:MTH00073  161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-225 7.75e-79

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 235.92  E-value: 7.75e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAP-KRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFI 79
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPtSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  80 ASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVR 159
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 160 LTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-225 2.17e-68

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 209.42  E-value: 2.17e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLMFTAP-KRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFI 79
Cdd:MTH00179    1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLtNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  80 ASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVR 159
Cdd:MTH00179   81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 160 LTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:MTH00179  161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-225 2.11e-52

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 168.54  E-value: 2.11e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   5 LFASFICP--NIMGLSTLPIIIMLPCLMFTAP----KRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILF 78
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLISsslsRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  79 IASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAV 158
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552400 159 RLTANITAGHLLMHLIGSATLALASINIMisSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLMSSAIF--ALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDA 225
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-221 1.59e-47

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 156.10  E-value: 1.59e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGL-----STLPIIIMLPCLMFTapkrwLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISL 75
Cdd:MTH00157    1 MMTNLFSIFDPSTSFNLslnwlSTFLGLLFIPSSFWL-----IPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  76 ILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIA 155
Cdd:MTH00157   76 FSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGT 155

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552400 156 LAVRLTANITAGHLLMHLIGSATLALASINIMISsitFTILLLLTILELAVAIIQAYVFTLLVSLY 221
Cdd:MTH00157  156 LAVRLAANMIAGHLLLTLLGNTGPSLSSMILSIL---ILIQILLLILESAVAIIQSYVFSVLSTLY 218
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-225 2.07e-46

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 153.21  E-value: 2.07e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNI--MGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILF 78
Cdd:MTH00035    3 INNSIFGQFSPDTIlfIPLTLLSSVIALSWLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  79 IASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAV 158
Cdd:MTH00035   83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552400 159 RLTANITAGHLLMHLIGSATLALASiNIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDN 225
Cdd:MTH00035  163 RLAANLTAGHLLIFLLSTAIWELSN-SPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQN 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 65-222 1.16e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 136.38  E-value: 1.16e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  65 GRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552400 145 ETISLFIQPIALAVRLTANITAGHLLMHLIGSATLALASINIMISsitFTILLLLTILELAVAIIQAYVFTLLVSLYL 222
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSSVGLLP---LLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 1.34e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 135.93  E-value: 1.34e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGLSTLPIIIMLPCLM--FTAPKRWL-PNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLIL 77
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISLSWITLLLFllLMPSSVWFcPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  78 FIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALA 157
Cdd:MTH00176   81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244552400 158 VRLTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00176  161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 5-224 2.58e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 135.38  E-value: 2.58e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   5 LFASFICPNIMGLSTLPIIIMLP---CLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIAS 81
Cdd:MTH00173    5 LFSSFDDHNSSFSSLSFLMWLLSlmsLFFFSSSVWVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLIS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  82 TNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRLT 161
Cdd:MTH00173   85 LNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLL 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244552400 162 ANITAGHLLMHLIGSATLA-LASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:MTH00173  165 ANISAGHIVLTLIGNYLSSsLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_A pfam00119
ATP synthase A chain;
14-223 3.19e-38

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 131.84  E-value: 3.19e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  14 IMGLSTLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMS-MHSKLGRTWSLMLISLILFIASTNLLGLL---P 89
Cdd:pfam00119   2 LMSLIVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDnIGKKKGRKFFPLLLTLFFFILVSNLLGLIpksP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  90 YSFTPTTQLSMNLGMAIPLWMGTVILGLRKK-PKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRLTANITAGH 168
Cdd:pfam00119  82 GGFTVTADINVTLALALIVFLLVHYYGIKKHgLGGYFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGH 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1244552400 169 LLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLH 223
Cdd:pfam00119 162 LLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 12-226 1.12e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 110.21  E-value: 1.12e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  12 PNIMGLSTLPIIIMLPCLMFTAPkrwlpNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLPYS 91
Cdd:MTH00005   22 STAFWAFNFSIILLLSSSFWITP-----NRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYV 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  92 FTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRLTANITAGHLLM 171
Cdd:MTH00005   97 FSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVL 176

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1244552400 172 HLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHDNS 226
Cdd:MTH00005  177 SLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDDHP 231
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-224 5.01e-29

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 108.59  E-value: 5.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400   1 MNKNLFASFICPNIMGL---STLPIIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLIL 77
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLtnsSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  78 FIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALA 157
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552400 158 VRLTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLAD 227
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 35-224 4.63e-27

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 103.55  E-value: 4.63e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  35 KRWLPNRIQILqIWLIRLITKQMMSMH-SKLGRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTV 113
Cdd:MTH00175   49 DKLIPNRWQSI-MELIYLNIRSVVHDNlGKSGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVT 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 114 ILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETISLFIQPIALAVRLTANITAGHLLMHLI-GSATLALASINIMISSIT 192
Cdd:MTH00175  128 LLGFLTFKWNFLSILMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILsGFAFNMLSNGLIILSLFP 207

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1244552400 193 FTILLLLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:MTH00175  208 MLIMIFITLLEMAVAVIQAYVFCLLTTIYLGD 239
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 39-224 1.57e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 96.30  E-value: 1.57e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  39 PNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLR 118
Cdd:COG0356    28 PGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIK 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 119 KK-PKASLAHFLPQGTPtPLIPMLIIIETISLFIQPIALAVRLTANITAGHLLMHLIGSATLALASINIMIssitfTILL 197
Cdd:COG0356   108 KKgLGGYLKHLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLLLGVLSL-----LLPV 181

                         170       180
                  ....*....|....*....|....*..
gi 1244552400 198 LLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:COG0356   182 AWTAFELLVGFLQAYIFTMLTAVYISL 208
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 22-224 9.10e-22

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 89.47  E-value: 9.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  22 IIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLP-YSFTPTTQLSM 100
Cdd:PRK05815   26 LILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINV 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 101 NLGMAIPLWMGTVILGLRKKpkaSLAHFLPQGTPTPlIPMLIIIETISLFIQPIALAVRLTANITAGHLLMHLIGSatla 180
Cdd:PRK05815  106 TLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLLLPIEIISEFSRPISLSLRLFGNMLAGELILALIAL---- 177

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1244552400 181 LASINIMISSITFTILLLLTILELAVAIIQAYVFTLLVSLYLHD 224
Cdd:PRK05815  178 LGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISM 221
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 65-224 6.69e-21

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 87.69  E-value: 6.69e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  65 GRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIII 144
Cdd:MTH00174   87 GGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPLLTII 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 145 ETISLFIQPIALAVRLTANITAGHLLMHLIGSATLALASINIMISSITFTILLLLTILE-LAVAIIQAYVFTLLVSLYLH 223
Cdd:MTH00174  167 ETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSFVPFAILIFVTILeMAVAIIQAYVFTLLTIVYLR 246


                  .
gi 1244552400 224 D 224
Cdd:MTH00174  247 D 247
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-222 5.42e-16

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 75.55  E-value: 5.42e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  72 LISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKP-KASLAHfLPQGTPTPLIPMLIIIETISLF 150
Cdd:PRK13419  174 LLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGiKGYLAH-LTGGTHWSLWIIMIPIEFIGLF 252

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552400 151 IQPIALAVRLTANITAGHLLMhligsatLALASINIMISSITFTILLLLTILELA------VAIIQAYVFTLLVSLYL 222
Cdd:PRK13419  253 TKPFALTVRLFANMTAGHIVI-------LSLIFISFILKSYIVAVAVSVPFAIFIyllelfVAFLQAYIFTMLSALFI 323
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 71-222 7.69e-12

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 61.92  E-value: 7.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  71 MLISLILFiastNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASlaHFLPQGTPTPLIPM-LIIIETISL 149
Cdd:MTH00087   58 TFIVLLLF----CFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSKSEKFS--VYLSKGSDSFLKTFsMLFVEIVSE 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244552400 150 FIQPIALAVRLTANITAGHLLMHLIGSatlalasinimISSITFTILLLLTILELAVAIIQAYVFTLLVSLYL 222
Cdd:MTH00087  132 LSRPLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 93-222 1.26e-05

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 45.27  E-value: 1.26e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  93 TPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIETI-SLFIQPIALAVRLTANITAGHLLM 171
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEFIvSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1244552400 172 HLIGSATLALASINIMISSITFTILLLLTILElaVAIIQAYVFTLLVSLYL 222
Cdd:PRK13417  297 LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIF--VAFLQAYIFVLLTSLFV 345
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 22-222 1.10e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 38.96  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  22 IIIMLPCLMFTAPKRWLPNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMN 101
Cdd:PRK13420   28 IVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIPGFHSPTADLSVT 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 102 LGMAIPLWMGTVILGLRKKP-KASLAHFLpqgTPTP-LIPMLIIIEtislFIQPIALAVRLTANITAGHLLMHLIGSATL 179
Cdd:PRK13420  108 AALALLVFFSVHWFGIRAEGlREYLKHYL---SPSPfLLPFHLISE----ITRTLALAVRLFGNIMSLELAALLVLLVAG 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1244552400 180 ALASINIMIssitftilllltiLELAVAIIQAYVFTLLVSLYL 222
Cdd:PRK13420  181 FLVPVPILM-------------LHIIEALVQAYIFGMLALIYI 210
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 39-217 4.19e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 37.37  E-value: 4.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  39 PNRIQILQIWLIRLITKQMMSMHSKLGRTWSLMLISLILFIASTNLLGLLPYSFTPTTQLSMNLGMAIPLWMGTVILGLR 118
Cdd:PRK13421   48 PGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALIVFLATIYYGVR 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400 119 KK-PKASLAHFLpqgTPTPLIPMLIIIETISlfiQPIALAVRLTANITAGHLLMHLIGSATLALASINIMISSITFtill 197
Cdd:PRK13421  128 ARgVRGYLATFA---EPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVFVIGIVLSLAGLLVPIPLMALDLLT---- 197

                         170       180
                  ....*....|....*....|
gi 1244552400 198 lltilelavAIIQAYVFTLL 217
Cdd:PRK13421  198 ---------GAVQAYIFAVL 208
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 68-167 8.71e-03

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 35.63  E-value: 8.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552400  68 WSLMLISLILFIASTNLLGL-LPYSFTPTTQLSMNLGMAIPLWMGTVILGLRKKPKASLAHFLPQGTPTPLIPMLIIIET 146
Cdd:MTH00050   21 SVSYYYSVVLFIVLFLFLLYrLPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPFVCIAET 100

                          90       100
                  ....*....|....*....|.
gi 1244552400 147 ISLFIQPIALAVRLTANITAG 167
Cdd:MTH00050  101 ISYIIRPVVLILRPFINISLG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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