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Conserved domains on  [gi|1244552088|gb|ATD52614|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Thylacinus cynocephalus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 548.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552088 241 LFLGSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 548.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552088 241 LFLGSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
6-303 2.58e-116

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 337.52  E-value: 2.58e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   6 LFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTI 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  86 WTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMK 163
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVgiLYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 164 TLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 244 GSSMSLLtPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLW 303
Cdd:pfam00146 242 GGWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 1.19e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 303.98  E-value: 1.19e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:COG1005    10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLING 158
Cdd:COG1005    90 PALLAFAVIPFGPGLVLADLNVglLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 159 SYTMKTLSITQE-NLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNAL 237
Cdd:COG1005   170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552088 238 TTILFLGS-----SMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLA 299
Cdd:COG1005   250 ATTLFLGGwlgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 548.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552088 241 LFLGSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQM 318
Cdd:MTH00104  241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 524.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   3 TLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIA 82
Cdd:MTH00111    8 LINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLA 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  83 LTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTM 162
Cdd:MTH00111   88 LTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTL 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 163 KTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILF 242
Cdd:MTH00111  168 QTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILF 247

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552088 243 LGSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQM 318
Cdd:MTH00111  248 LNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-317 6.23e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 489.52  E-value: 6.23e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00071    6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00071   86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00071  166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552088 241 LFLGSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQ 317
Cdd:MTH00071  246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 4-318 3.36e-172

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 480.26  E-value: 3.36e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   4 LNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIAL 83
Cdd:MTH00134   10 INPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLAL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  84 TIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMK 163
Cdd:MTH00134   90 TLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 164 TLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFL 243
Cdd:MTH00134  170 TFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFL 249

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1244552088 244 GSSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAPQM 318
Cdd:MTH00134  250 GASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 4-316 1.38e-143

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 406.99  E-value: 1.38e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   4 LNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIAL 83
Cdd:MTH00218    6 INLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLAL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  84 TIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMK 163
Cdd:MTH00218   86 LLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLE 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 164 TLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFL 243
Cdd:MTH00218  166 GFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244552088 244 GSSmslltpnINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAP 316
Cdd:MTH00218  246 GTS-------LTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-316 3.28e-143

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 406.67  E-value: 3.28e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00040    5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00040   85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00040  165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552088 241 LFLG--SSMSLLTPnINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIAP 316
Cdd:MTH00040  245 LFLGggSPFNEIFP-INIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-311 6.52e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 341.75  E-value: 6.52e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00193    3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00193   83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00193  163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1244552088 241 LFLGSsmslltpNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISM 311
Cdd:MTH00193  243 MFLGG-------DLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
6-303 2.58e-116

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 337.52  E-value: 2.58e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   6 LFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTI 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  86 WTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMK 163
Cdd:pfam00146  82 FAVIPFGPGLVLADLNVgiLYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 164 TLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 244 GSSMSLLtPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLW 303
Cdd:pfam00146 242 GGWLGPF-PLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 13-307 1.11e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 336.07  E-value: 1.11e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  13 ILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTIWTPLPMP 92
Cdd:MTH00143   14 VLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  93 NALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMKTLSITQENL 172
Cdd:MTH00143   94 FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSV 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 173 WLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFLGSSMSLLTp 252
Cdd:MTH00143  174 WLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL- 252

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1244552088 253 nINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISM 307
Cdd:MTH00143  253 -LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 10-312 8.53e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 334.02  E-value: 8.53e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  10 IIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTIWTPL 89
Cdd:MTH00195   12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  90 PMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMKTLSITQ 169
Cdd:MTH00195   92 PSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 170 ENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFLGSSmsl 249
Cdd:MTH00195  172 GFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG--- 248

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244552088 250 ltpniNTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMS 312
Cdd:MTH00195  249 -----GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALN 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-311 1.51e-110

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 323.14  E-value: 1.51e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1244552088 241 LFLGSSMslltpNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTlaLCLWFISMPISM 311
Cdd:MTH00225  242 LFFGGFF-----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLS--LAYLFMVLIILM 305
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-316 2.69e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 315.51  E-value: 2.69e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:MTH00054    3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLING 158
Cdd:MTH00054   83 LAFIAWGVIPYGEGVVLSDLGIgiLYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 159 SYTMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALT 238
Cdd:MTH00054  163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 239 TILFLGSSMSLLTPN---INTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISMPISMSCIA 315
Cdd:MTH00054  243 VILFLGGWLVISGPTsyfSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                  .
gi 1244552088 316 P 316
Cdd:MTH00054  323 P 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-300 6.07e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 314.75  E-value: 6.07e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   2 FTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTI 81
Cdd:MTH00216    8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  82 ALTIWTPLPMPNALLD--LNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGS 159
Cdd:MTH00216   88 ALIVWGVIPYERGVLIsdFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 160 YTMKTLSITQEN-LWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALT 238
Cdd:MTH00216  168 LSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244552088 239 TILFLGSSMSLLTP-NINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLAL 300
Cdd:MTH00216  248 TILFLGGWLSPIKYfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGV 310
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-299 1.19e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 303.98  E-value: 1.19e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:COG1005    10 ITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLING 158
Cdd:COG1005    90 PALLAFAVIPFGPGLVLADLNVglLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 159 SYTMKTLSITQE-NLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNAL 237
Cdd:COG1005   170 SLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSAL 249

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1244552088 238 TTILFLGS-----SMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLA 299
Cdd:COG1005   250 ATTLFLGGwlgpfPILPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 1.22e-97

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 290.94  E-value: 1.22e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   1 MFTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALT 80
Cdd:PRK06076   11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  81 IALTIWTPLPMPNALLDLNLG--LLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLING 158
Cdd:PRK06076   91 PAFLAWAVIPFGPELVIADLNvgILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 159 SYTMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALT 238
Cdd:PRK06076  171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244552088 239 TILFLG---SSMSLLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLW 303
Cdd:PRK06076  251 TTLFLGgwlPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-307 2.63e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 274.35  E-value: 2.63e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   2 FTLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTI 81
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  82 ALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYT 161
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 162 MKTLsITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTIL 241
Cdd:MTH00010  165 FSKI-IMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244552088 242 FLGSSMSLLtpnINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISM 307
Cdd:MTH00010  244 FTSFIPSIF---ISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 3-316 9.46e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 263.80  E-value: 9.46e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   3 TLNLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIA 82
Cdd:MTH00029   10 TIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLA 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  83 LTIWTPLPMPNALLD--LNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSY 160
Cdd:MTH00029   90 ILAWAIVTMDQGVFLsdLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSL 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 161 TMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTI 240
Cdd:MTH00029  170 NISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTI 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 241 LFLGSSMSLL----------------TPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWF 304
Cdd:MTH00029  250 FFLGGWLSPLdgiptppeafsifeqiASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILT 329

                         330
                  ....*....|..
gi 1244552088 305 ISMPISMSCIAP 316
Cdd:MTH00029  330 AGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-307 4.64e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 213.99  E-value: 4.64e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   5 NLFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALT 84
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  85 IWTPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSytmkt 164
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNS----- 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 165 LSITQENLWLIFTTWplaMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFLG 244
Cdd:MTH00090  156 FSFVSSFSLSLFVIY---LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244552088 245 SSMSLLTPNINTLIFviktllltitflwIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFISM 307
Cdd:MTH00090  233 FSFLMLFLIFSLLIF-------------IRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 7-298 1.01e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 164.33  E-value: 1.01e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   7 FLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTIW 86
Cdd:MTH00058    8 LEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYC 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  87 TPLPMPNALLDLNLGLLFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSYTMktLS 166
Cdd:MTH00058   88 FIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSL--VD 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 167 ITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNALTTILFLGSS 246
Cdd:MTH00058  166 FYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGG 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1244552088 247 MslltpninTLIFVIKTLLLtitFLWIRASYPRFRYDQLMYLLWKNFLPLTL 298
Cdd:MTH00058  246 F--------VSIMLLFHLLF---FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 6-298 2.82e-40

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 144.32  E-value: 2.82e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   6 LFLYIIPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAIKLFTKEPLQPLTSSWSMFILAPILALTIALTI 85
Cdd:CHL00032   33 ILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLS 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  86 WTPLPMPNALLDLNLGL--LFILSMSGLSVYSILWSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGSytMK 163
Cdd:CHL00032  113 YLVIPFGYHLVLADLSIgvFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LS 190

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 164 TLSITQENLWLIFTTWPL------AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNAL 237
Cdd:CHL00032  191 TVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLF 270

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244552088 238 TTILFLGS--------------SMSLLTPNINTLIFVIKTLLLTITFLWI----RASYPRFRYDQLMYLLWKNFLPLTL 298
Cdd:CHL00032  271 VTVLYLGGwnlsipyifipelfEINKTGGVFGTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
5-305 2.22e-35

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 129.92  E-value: 2.22e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088   5 NLFLYIIPILLAVA---FLTLIERKVLGYMQFRKGPnivgpyGLLQPFADAIKLFTKEPLQPLTSSWsMFILAPILALTI 81
Cdd:COG0650     3 LILLALLQLLLALLlapLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVALAA 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088  82 ALTIWTPLPMPNALLDLNLGLLFILSMSGLSVYSIL--WSGWASNSKYALVGALRAVAQTISYEVTLAIILLSVMLINGS 159
Cdd:COG0650    76 MLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFlaLAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGS 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244552088 160 ---YTMKTLSITQENLWLIFTTWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYASGPFAMFFLAEYANIIAMNA 236
Cdd:COG0650   156 tslSDIVAYQAAHGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLS 235

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1244552088 237 LTTILFLGSSMSlLTPNINTLIFVIKTLLLTITFLWIRASYPRFRYDQLMYLLWKNFLPLTLALCLWFI 305
Cdd:COG0650   236 LFVNLFLPWGIA-LTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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