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Conserved domains on  [gi|1244551807|gb|ATD52353|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Thylacinus cynocephalus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.75e-163

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 458.93  E-value: 5.75e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNST 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTPMFSIFM 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.75e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 458.93  E-value: 5.75e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNST 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTPMFSIFM 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.20e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.20e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  23 SNHWFTAWMGLEINTLAIMPVMTS-PNNPRSTEATTKYFLTQATASMIMMFAIVYNAW---TTDQWTMFNLSDDWAST-- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNytgTLSFDELSKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  97 ------FMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILL-TWQKIAP-----TSILYQISPCLNMEIMMSLAILSAIL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 165 GGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAA----TITLF-----MTLNYSTITKIKSLANLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1244551807 236 KSAPIAFIIMLTLLSLGGLPPLSGFSPKWLIL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-299 1.93e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.58  E-value: 1.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLslfLGTCLTLSSNHWFTAWMGLEINTLA--IMpVMTSPNNPRSTEATTKYFLTQATASMIMMF--AIVY--- 76
Cdd:COG1007   105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSlyVL-VAFRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYgat 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  77 -------------NAWTTDQWTMFnlsddwASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTS--- 140
Cdd:COG1007   181 gslnlagiaaalaAGGANSPLLLL------GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAall 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 141 -ILYQISPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAAtiTLF 216
Cdd:COG1007   255 rLLVEAFPGLAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLA--YLF 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 217 MTL-----------NYSTITKIKSLANLWNKSAPIAFIIMLtllslgglpplSGFS----P-------KWLILHELASNN 274
Cdd:COG1007   333 MNLgafavilllsrKGGEAEEIEDLAGLARRSPLLALAMTI-----------FLLSlagiPptagffgKFYVFSAAVEAG 401

                         330       340
                  ....*....|....*....|....*
gi 1244551807 275 NAVAAIVMALSALLNLFFYMRIMYV 299
Cdd:COG1007   402 LYWLAVIAVLNSVISAYYYLRVVKA 426
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-314 1.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.38  E-value: 1.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLslfLGTCLTLSSNHWFTAWMGLEINTLAIMPVMT-SPNNPRSTEATTKYFLTQATASMIMMF--AIVYNAWT 80
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgiSLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLS------DDW----ASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCL- 149
Cdd:TIGR01770 182 SLNFEDLLLFlsngmlNISllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIl 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 150 ------NMEIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAatITLFMTL---- 219
Cdd:TIGR01770 262 fgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIF--IYALMSLgafg 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 220 --------NYSTITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLF 291
Cdd:TIGR01770 340 vlsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAF 419

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 292 FYMRI---MYVSTL-TIFPYTNTCKMQ 314
Cdd:TIGR01770 420 YYLRVvkvMYFDKPeRRIPSNPQSKAQ 446
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-347 5.75e-163

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 458.93  E-value: 5.75e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNST 320
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTPMFSIFM 347
Cdd:MTH00105  321 KPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-341 1.09e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 364.13  E-value: 1.09e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPcLNMEIMMSLAIL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAP-TNPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNST 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|.
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTP 341
Cdd:MTH00135  320 QLTLPLAISTTATLMLLPLTP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 5.65e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 337.18  E-value: 5.65e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNST 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|..
gi 1244551807 321 KPTcTIPTMTIISFLLLPLTPM 342
Cdd:MTH00112  321 KNT-LTATLTTLSTLLLPLSPM 341
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-341 2.99e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 335.35  E-value: 2.99e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNsT 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK-N 319

                         330       340
                  ....*....|....*....|.
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTP 341
Cdd:MTH00070  320 KTNNLLSLTIILSLMLLPITP 340
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 1.07e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 269.92  E-value: 1.07e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWT 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAIL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYfNST 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR-TKS 319

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTPMFSIFM 347
Cdd:MTH00200  320 NSNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-346 1.90e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.07  E-value: 1.90e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  11 LSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQWTMFNLS 90
Cdd:MTH00041   11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  91 DDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAILSAILGGWGGL 170
Cdd:MTH00041   91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 171 NQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPIAFIIMLTLLS 250
Cdd:MTH00041  171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 251 LGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNSTKPTCTIPTMT 330
Cdd:MTH00041  251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVILSI 330

                         330
                  ....*....|....*.
gi 1244551807 331 IISFLLLPLTPMFSIF 346
Cdd:MTH00041  331 LSSISILGLLLIPLFL 346
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-346 1.38e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 174.24  E-value: 1.38e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   1 MSPYTLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAwt 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM-- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 tdqwTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPtsiLYQISPCLNMEIMMSLAIL 160
Cdd:MTH00160   80 ----LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAP---LILLSYLINNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPI 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 241 AFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVStltIFPYTNTCKMQWYFNST 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS---LMLNYNKNKWNLKKKKN 309

                         330       340
                  ....*....|....*....|....*.
gi 1244551807 321 KPTCTIPTMTIISFLLLPLTPMFSIF 346
Cdd:MTH00160  310 KFSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-319 5.31e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.99  E-value: 5.31e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  13 LFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQWtmfnlsdd 92
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW-------- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  93 WASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNM-EIMMSLAILSAILGGWGGLN 171
Cdd:MTH00144   85 FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 172 QTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLwNKSAPIAFIIMLTLLSL 251
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSIISLLLSL 243

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244551807 252 GGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNS 319
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-338 4.47e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 4.47e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   5 TLTMVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAivynawTTDQW 84
Cdd:MTH00011    7 TMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLG------MTMMW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  85 TMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAILSAIL 164
Cdd:MTH00011   81 SFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 165 GGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPIAFII 244
Cdd:MTH00011  161 GGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 245 MLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVStltiFPYTNTCKMQWYFNSTKPTC 324
Cdd:MTH00011  241 FIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNF----MYLSPTFSSLKSAPYEPKTK 316

                         330
                  ....*....|....
gi 1244551807 325 TIPTMTIISFLLLP 338
Cdd:MTH00011  317 ILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-340 2.00e-36

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.03  E-value: 2.00e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   8 MVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQWTMF 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  88 NLsddwastFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPclNMEIMMSLAILSAILGGW 167
Cdd:MTH00197   82 VV-------LVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 168 GGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYSTITKIKSLANLWNKSAPIAFIIMLT 247
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 248 LLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYVSTLTIFPYTNTCKMQWYFNSTKptcTIP 327
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGL---FIL 309

                         330
                  ....*....|...
gi 1244551807 328 TMTIISFLLLPLT 340
Cdd:MTH00197  310 LMMMLPLLMIFTM 322
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-299 5.87e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 118.97  E-value: 5.87e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   8 MVSLSLFLGTCLTLSSNHWFTAWMGLEINTLAI-MPVMTSPNNPRSTEATTKYFLTQATASMIMMF--AIVY--NAWTTD 82
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFgcALLYglTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  83 QWTMFNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNmeIMMSLAILSA 162
Cdd:MTH00199  181 QGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 163 ILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVA----LIIYMAATITLFMTLNYSTITK--IKSLANLWNK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESIQAsliyMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1244551807 237 SAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYV 299
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQI 401
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.20e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.20e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  23 SNHWFTAWMGLEINTLAIMPVMTS-PNNPRSTEATTKYFLTQATASMIMMFAIVYNAW---TTDQWTMFNLSDDWAST-- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNytgTLSFDELSKALTGGLNSsg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  97 ------FMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILL-TWQKIAP-----TSILYQISPCLNMEIMMSLAILSAIL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 165 GGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAA----TITLF-----MTLNYSTITKIKSLANLWN 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLThglfSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1244551807 236 KSAPIAFIIMLTLLSLGGLPPLSGFSPKWLIL 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-299 1.93e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.58  E-value: 1.93e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLslfLGTCLTLSSNHWFTAWMGLEINTLA--IMpVMTSPNNPRSTEATTKYFLTQATASMIMMF--AIVY--- 76
Cdd:COG1007   105 YALLLFAT---LGMMLMASANDLLTLFLGLELLSLSlyVL-VAFRRDDRRSSEAALKYFLLGALSSGFLLYgiSLLYgat 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  77 -------------NAWTTDQWTMFnlsddwASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTS--- 140
Cdd:COG1007   181 gslnlagiaaalaAGGANSPLLLL------GLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAall 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 141 -ILYQISPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAAtiTLF 216
Cdd:COG1007   255 rLLVEAFPGLAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLA--YLF 332

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 217 MTL-----------NYSTITKIKSLANLWNKSAPIAFIIMLtllslgglpplSGFS----P-------KWLILHELASNN 274
Cdd:COG1007   333 MNLgafavilllsrKGGEAEEIEDLAGLARRSPLLALAMTI-----------FLLSlagiPptagffgKFYVFSAAVEAG 401

                         330       340
                  ....*....|....*....|....*
gi 1244551807 275 NAVAAIVMALSALLNLFFYMRIMYV 299
Cdd:COG1007   402 LYWLAVIAVLNSVISAYYYLRVVKA 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-299 6.40e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.12  E-value: 6.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLslfLGTCLTLSSNHWFTAWMGLEINTLA--IMpVMTSPNNPRSTEATTKYFLTQATASMIMMF--AIVYNAW 79
Cdd:PRK05777  106 YLLVLFAL---LGMMVMVSANDLLTLFLGLELLSLPlyAL-AALRRDRRRSLEAAIKYFVLGALASGFLLYgmSLLYGAT 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  80 -TTDQWTMFNLSDDWAST---------FMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAP----TSILYQI 145
Cdd:PRK05777  182 gSLSFAGIAKALADGSGNsllllfglvFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfavlLRLLVVA 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 146 SPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVA----LIIYMAATITLF-- 216
Cdd:PRK05777  262 FGGLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAvlfyLLAYLFMTLGAFgv 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 217 ---MTLNYSTITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFY 293
Cdd:PRK05777  342 islLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYY 421


                  ....*.
gi 1244551807 294 MRIMYV 299
Cdd:PRK05777  422 LRVIKL 427
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 1.59e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 93.94  E-value: 1.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  15 LGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSP-NNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQWTM------F 87
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNrGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  88 NLSDDWASTF-------MTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPclNMEIMMSLAIL 160
Cdd:MTH00196   84 NSGQSFSSVSvpigyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVA----LIIYMAATITLFMT-LNYST-ITKIKSLANLW 234
Cdd:MTH00196  162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQAslvyLFIYIIMSICVFSIiLALNVyKNLIIEFSGLS 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1244551807 235 NKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRI 296
Cdd:MTH00196  242 RRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-299 2.34e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 88.28  E-value: 2.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  13 LFLGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQWTMFNLSDD 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  93 ----------WASTFMTIALAMKLGLAPFHLWVPEVTQGIP-----LLSG--------MILLTWQKIAPTSILYQISPcl 149
Cdd:COG0651   196 laeldpglllAAFALLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGlltkvgvyAILRVLTLLFGADPALFLGT-- 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 150 nmeIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMA----ATITLFMT----LNY 221
Cdd:COG0651   274 ---LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLnhalAKALLFLAagaiERA 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1244551807 222 STITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYV 299
Cdd:COG0651   351 TGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGR 428
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 4-314 1.41e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 80.38  E-value: 1.41e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLslfLGTCLTLSSNHWFTAWMGLEINTLAIMPVMT-SPNNPRSTEATTKYFLTQATASMIMMF--AIVYNAWT 80
Cdd:TIGR01770 105 YILLLFAL---LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgiSLIYGFTG 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  81 TDQWTMFNLS------DDW----ASTFMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCL- 149
Cdd:TIGR01770 182 SLNFEDLLLFlsngmlNISllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIl 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 150 ------NMEIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAatITLFMTL---- 219
Cdd:TIGR01770 262 fgfseaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIF--IYALMSLgafg 339

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 220 --------NYSTITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLF 291
Cdd:TIGR01770 340 vlsllrsyKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAF 419

                         330       340
                  ....*....|....*....|....*..
gi 1244551807 292 FYMRI---MYVSTL-TIFPYTNTCKMQ 314
Cdd:TIGR01770 420 YYLRVvkvMYFDKPeRRIPSNPQSKAQ 446
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-336 7.60e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 7.60e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  15 LGTCLTLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRST---------EATTKYFLTQATASMIMMFAI-VYNAWTTDQW 84
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCaLYFGFTGNEG 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  85 TMFN-LSDDWAST------------FMTIALAMKLGLAPFHLWVPEVTQGIPLLSGMILLTWQKIapTSILYQISPCLNM 151
Cdd:MTH00198  279 MLGTiLSATLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 152 EIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINP--------TLTVVALIIYMAAtITLFMTL---- 219
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTyeslqaswTYAVTYLVSALAS-FTVICTLeefg 435

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 220 --------------NYSTITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILhelasnnnaVAAIVMALS 285
Cdd:MTH00198  436 trtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL---------VGSIKIAFS 506

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1244551807 286 ALLNLFFYMRIMYV--STLTIFPYTNTCKmQWYFNSTKPtcTIPTMTIISFLL 336
Cdd:MTH00198  507 SSLSIYYLVALFAIicTCISAFYYIRIVA-TIYFNFTRP--LIKTKTPLSFIL 556
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-219 7.09e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.26  E-value: 7.09e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  51 RSTEATTKYFLTQATASMIMMFA----------------IVYNAWTTDqwtMFNLSDDW-ASTFMTIALAMKLGLAPFHL 113
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGfswlyglsggeielqeIVNGLINTQ---MYNSPGISiALIFITVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 114 WVPEVTQGIPLLSGMILLTWQKIA----PTSILYQISPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITH 186
Cdd:CHL00049  236 WTPDVYEGSPTPVVAFLSVTSKVAasalATRIFDIPFYFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1244551807 187 MGWMTI-IVNINPTLTVVALIIYMaaTITLFMTL 219
Cdd:CHL00049  316 IGYVIIgIIVGDSNDGYASMITYM--LFYIFMNL 347
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-192 6.04e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 66.26  E-value: 6.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  55 ATTKYFLTQATASMIMMFAIVYNAWTTDQWTmFNLSD-----------DWASTFMTIALAMKLGLAPFHLWVPEV----- 118
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALT-FDIAElaaaplpltaqLLLFLAFFIAFAVKVPMFPFHTWLPDAhveap 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 119 TQGIPLLSGmILL-----------------TWQKIAPtsilyqispclnmeIMMSLAILSAILGGWGGLNQTHLRKILAY 181
Cdd:COG1008   241 TAGSVLLAG-VLLkmggygllrfalplfpeASAYFAP--------------LLAALGVIGIIYGALVALAQTDLKRLIAY 305

                         170
                  ....*....|.
gi 1244551807 182 SSITHMGWMTI 192
Cdd:COG1008   306 SSVSHMGFVLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 55-211 6.62e-12

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 66.12  E-value: 6.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  55 ATTKYFLTQATASMIMMFAIVYNAWTTDQwtMFNLSDDWASTFMT-----------IALAMKLGLAPFHLWVPEV----- 118
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFLGGG--TFDLLELLNLPLPFgvqtwlflaffIAFAVKVPLFPLHTWLPDAhveap 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 119 TQGIPLLSGMILltwqKIAPTSILYQISPCLN------MEIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTI 192
Cdd:TIGR01972 235 TAGSVILAGVLL----KMGTYGFLRFNLPLFPdaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170
                  ....*....|....*....
gi 1244551807 193 IVNINPTLTVVALIIYMAA 211
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMIS 329
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-341 5.76e-10

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 54.19  E-value: 5.76e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1244551807 291 FFYMRIMYVSTLTIFPYTNTCKMQWYFNSTKPTCTIPTMTIISFLLLPLTP 341
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-299 3.64e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 58.06  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  43 VMTSPNNPRSTEATTKYFLTQATASMIMMFAIV--YNAWTT---------------DQWTMFNLSDDWAST----FMTIA 101
Cdd:PRK12667  153 VAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAflYATFGTlnmadlsakirglsfPLTGGLAGNPPLALGvalaLALWA 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 102 LAMKLGLAPFHLWVPEVTQGIP-----LLSGMI-------------LLTWQKIAPTSILYQISPclnmeIMMSLAILSAI 163
Cdd:PRK12667  233 FTIKAAIFPNHFWLPDAHPAAPspvsaMLSGLVvnvgayaiirflyTIFGISPSLIDFRAALSP-----ILIILGAVSAI 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 164 LGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMA----ATITLFMT----LNYSTITKIKSLANLWN 235
Cdd:PRK12667  308 IGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiAKSLLFLAsgvfIHAAGTRDIDELAGLGR 387

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1244551807 236 KSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNLFFYMRIMYV 299
Cdd:PRK12667  388 KMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
49-219 1.18e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.21  E-value: 1.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  49 NPRSTEATTKYFLTQATASMIMMFAI---------------VYNAWTTDQWTMFNLsddwASTFMTIALAMKLGLAPFHL 113
Cdd:PRK02504  156 DPRSNEAALKYLLIGAASSAIFLYGSsllyglsggstqlsaIALALITSPSLGLAL----ALVFVIAGIAFKISAVPFHQ 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 114 WVPEVTQGIPLLSGMILLTWQKIA----PTSILYQISPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITH 186
Cdd:PRK02504  232 WTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1244551807 187 MGWMTIIVNINPTLTVVALIIYMAatITLFMTL 219
Cdd:PRK02504  312 AGFVMIGLVAGTEAGYASMVFYLL--AYLFMNL 342
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-298 1.26e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.04  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLSLFLGTCLTlssNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQ 83
Cdd:PRK08375  109 YALFLLLLAGLLGALLT---ADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGT 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  84 WTMFNLSD--------DWASTFMTIALAMKLGLAPFHLWVPE-----------------VTQGIPLLSGMILLTWQKIAP 138
Cdd:PRK08375  186 LNMADLAGalaenptvVTAFGFVLLALALKAAVFPLHTWLPRaypaappvvtallsglvTKVAVYALIRIYFTVFGGDFR 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 139 TSILYQIspclnmeIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAA----TIT 214
Cdd:PRK08375  266 FALGLGW-------LLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHhalmKGA 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 215 LFMTLN--YSTI--TKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALSALLNL 290
Cdd:PRK08375  339 LFLAAGaiEVTYgtRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL 418


                  ....*...
gi 1244551807 291 FFYMRIMY 298
Cdd:PRK08375  419 LYFLRIWY 426
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-192 8.04e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 50.59  E-value: 8.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  55 ATTKYFLTQATASMIMMFAIVYNAWTTDQWT-MFNLSDdWASTFMT------------IALAMKLGLAPFHLWVPEV--- 118
Cdd:PRK05846  162 AATKFFLYTLLGSLLMLVAIIYLVVVYYNATgTFDIAD-LLNLPLPpgvqywlflaffIAFAVKMPMFPLHTWLPDAhvq 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 119 --TQGIPLLSGMILltwqKIAPTSIL---YQISPCLNME---IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWM 190
Cdd:PRK05846  241 apTAGSVLLAGILL----KMGAYGLLrfsLPLFPDASHEfapIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFV 316


                  ..
gi 1244551807 191 TI 192
Cdd:PRK05846  317 TL 318
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 94-222 5.97e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.83  E-value: 5.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  94 ASTFMTIALAMKLGLAPFHLWVPEVTQGIP-----LLSGM--------ILLTWQKIAPTSILYQISPclnmeIMMSLAIL 160
Cdd:PRK08676  208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsvvsaLLSGTvlnigiygILRLSALLRQSGAAEQFSN-----VLIGLGIF 282

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1244551807 161 SAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAATITLFMTLNYS 222
Cdd:PRK08676  283 SIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFS 344
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-298 2.30e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 45.96  E-value: 2.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   2 SPYTLTMVSLSLFLGTCLTLSSNhWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFLTQATASMIMMF---AIVYNA 78
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTK 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  79 WTTDQWT---MFNLSDDWASTFMTIALAMKLGLAPFHLWVPEV----TQGIPLLSGMILLTWQKIAPTSILYQISPCLNM 151
Cdd:PRK06589  194 TGNLDFVsggLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAmvahYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 152 EIMMS-------LAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMA----ATITLFMTL- 219
Cdd:PRK06589  274 QRIFAefnwlifIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVshsfAKICLFYSMg 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 220 NYSTITKIKSLANLWN--KSAP-IAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMAL----SALLNLFF 292
Cdd:PRK06589  354 SIYSLKKEDQVDKLHGtsKSFPlISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLvviaSSILSALY 433


                  ....*.
gi 1244551807 293 YMRIMY 298
Cdd:PRK06589  434 LLKILS 439
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-298 4.52e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.09  E-value: 4.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLSLFLGTCLTlssNHWFTAWMGLEINTLAIMPVMTSPNN-PRSTEATTKYFLTQATASMIMMFAIV-----YN 77
Cdd:PRK08376  124 YTLILLLELGMLGMAIT---GDLFNFFVFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIAllygqYG 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  78 AWTTD------QWTMFNLsDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIPL-LSGMILLTwqKIAPTSILYQIS---- 146
Cdd:PRK08376  201 TLNMAylavkmSENPTVV-AKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLVI--KQAGLYALARVLfsiy 277

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 147 -PCLNME----IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPT---LTVVALIIYMAATITLFMT 218
Cdd:PRK08376  278 gPAINLAtvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAalgDPAMASYGEIALAGGIYHI 357

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 219 LNYSTIT-----------------KIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIV 281
Cdd:PRK08376  358 VNHALYKallfltagaviyetgtrNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIA 437

                         330
                  ....*....|....*..
gi 1244551807 282 MALSAlLNLFFYMRIMY 298
Cdd:PRK08376  438 MIGSV-LTLASFVKVFH 453
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-297 6.28e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 6.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807   4 YTLTMVSLSLFLGTcltLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKY----------------FLTQATAS 67
Cdd:PRK12662  113 YSAFLLCLGGLLGI---LVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYliigtigatfyligigFLYAITGT 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  68 MIM--MFAIVYNAWTtdqwtmfNLSDDWASTFMTIALAMKLGLAPFHLWVPEVTQGIP-----LLSG-----MILLTWQK 135
Cdd:PRK12662  190 LNMgdMFLIIQDLPT-------NRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPsfisvFFSGtstkvMIYLIIRI 262

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 136 IAPT--SILYQISPCLNMeIMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMA--- 210
Cdd:PRK12662  263 VYDVfkANFVFTTLPFNN-VFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhs 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 211 -ATITLFMTLN----YSTITKIKSLANLWNKSAPIAFIIMLTLLSLGGLPPLSGFSPKWLILHELASNNNAVAAIVMALS 285
Cdd:PRK12662  342 iVKSALFMVSGsisyHFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVG 421

                         330
                  ....*....|..
gi 1244551807 286 ALLNLFFYMRIM 297
Cdd:PRK12662  422 SGLSVIYVWKIV 433
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 1.48e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  55 ATTKYFLTQATASMIMMFAIVYNAWTTDQWTmFNLSD----DWASTF-------MTIALAMKLGLAPFHLWVP----EVT 119
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTFT-FDLAElgakSYPLALelllyagFLIAFGVKLPIFPLHTWLPdahgEAS 216

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1244551807 120 QGIPLLSGMILLTWQKIAPTSILYQISPCLNMEIMMSLAILSAILGGWGGLN---QTHLRKILAYSSITHMGWMTI 192
Cdd:PRK12561  217 APVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVLL 292
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 11-209 1.49e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  11 LSLFLGTCL-TLSSNHWFTAWMGLEINTLAIMPVMTSPNNPRSTEATTKYFL------TQATASMIMMFA----IVYNAW 79
Cdd:PRK06458  114 YQLFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYAnaatVMGDGE 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  80 TTDQWT-MFNLSDDWASTFMTIALAM-------KLGLAPFHLWVPEVTQGIP-----LLSGMILltwqKIAPTSIL-YQI 145
Cdd:PRK06458  194 MAILWTeLLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLL----NVALYAVLrYYI 269

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 146 SPCLNME------IMMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYM 209
Cdd:PRK06458  270 LIDAAIGsdfpgrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHM 339
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 89-243 1.50e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 43.76  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  89 LSDDWASTFMTIALAM-------KLGLAPFHLWVPE-----------------VTQGIPLLSGMI-----LLTWQkiaPT 139
Cdd:PRK12644  193 LADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVARLApgfadVPVWR---PT 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 140 SIlyqispclnmeimmSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNI---NPTLTVVALIIYMAA-TITL 215
Cdd:PRK12644  270 VL--------------VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgtrDAALAGLAMLLAHALfKAAL 335

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1244551807 216 FMT---LNYSTITK-IKSLANLWNKSAPIAFI 243
Cdd:PRK12644  336 FLVvgiIDHSTGTRdIRKLSGLGRRQPVLAVV 367
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
100-209 3.08e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 3.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 100 IALAMKLGLAPFHLWVP----EVTQGIPLLSGMILL-----------------TWQKIAPTsilyqispclnmeiMMSLA 158
Cdd:PRK06473  213 VGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLklgtygllrfgvglfpeAWVYLAPW--------------LATWA 278

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1244551807 159 ILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYM 209
Cdd:PRK06473  279 VVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQM 329
PRK12650 PRK12650
DUF4040 family protein;
90-246 6.23e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 6.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  90 SDDWA-STFMTIALAMKLGLA--------PFHLWVPEVTQGIPLLSGMILLTWQKIAPTSILYQISPCLNME-----IMM 155
Cdd:PRK12650  197 SDVWAeKPGLTTVVAVLIAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLI 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 156 SLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAA----TITLFMT---LNYSTITK-I 227
Cdd:PRK12650  277 IVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAhalfKSSLFMLigvVDHQAGTRdI 356

                         170
                  ....*....|....*....
gi 1244551807 228 KSLANLWNKsAPIAFIIML 246
Cdd:PRK12650  357 RRLGSLWRR-MPFTFVSVT 374
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 54-211 7.95e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.06  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  54 EATTKYFLTQATASMIMMFAI--VYNAW-TTDQWTMFNLS-------DDWASTFMTIALAMKLGLAPFHLWVPEVTQGIP 123
Cdd:MTH00226  182 QAAYYFFFYTLIGSVLMLLCLfsLYNIHgTTDYLTLASCShvvseqtQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAP 261

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 124 -----LLSGmILLTWQKIAPTSILYQISPCLNMEI---MMSLAILSAILGGWGGLNQTHLRKILAYSSITHMGWMTIIVN 195
Cdd:MTH00226  262 vagsvLLAG-ILLKLGGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLV 340

                         170
                  ....*....|....*.
gi 1244551807 196 INPTLTVVALIIYMAA 211
Cdd:MTH00226  341 THDIIGLTGSIFIMLA 356
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-246 1.64e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.14  E-value: 1.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807  48 NNPRSTEATTKYFLTQATASMIMMFAIVYNAWTTDQW---TMFNLSDD-WASTFMTIALAM-------KLGLAPFHLWVP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLnfsELLAAAPTiLSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 117 E-----------------VTQGIPLLsgmilltwqkiAPTSILYQISPCLnMEIMMSLAILSAILGGWGGLNQTHLRKIL 179
Cdd:COG1009   236 DamegptpvsallhaatmVKAGVYLL-----------ARLSPLFALSPVW-LTVVAIIGAITALFAALIALAQTDIKRVL 303

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1244551807 180 AYSSITHMGWMTIIVNINPTLTVVALII----YMAAtitLFMT---LNYSTITK-IKSLANLWnKSAPIAFIIML 246
Cdd:COG1009   304 AYSTVSQLGYMFLALGVGAYVAALFHLLthafFKAL---LFLGagsVIHATGTRdIRKMGGLR-KKMPITAITFL 374
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-211 1.72e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.04  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1244551807 100 IALAMKLGLAPFHLWVPEV-----TQGIPLLSGMIL---------LTWQKIAPTSILYqiSPclnmeIMMSLAILSAILG 165
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLLklggygfirFSWPLLPEASEYF--SP-----LIQTLSLLAIIYG 286

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1244551807 166 GWGGLNQTHLRKILAYSSITHMGWMTIIVNINPTLTVVALIIYMAA 211
Cdd:MTH00217  287 SLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLA 332
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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