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Conserved domains on  [gi|1242575133|gb|ATA95929|]
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hypothetical protein BWO76_02030 (plasmid) [Sinorhizobium meliloti]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PhageMetallopep super family cl02049
Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a ...
 8-61 7.13e-15

Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a variety of phage and bacterial proteomes.


The actual alignment was detected with superfamily member pfam18894:

Pssm-ID: 470449  Cd Length: 138  Bit Score: 63.50  E-value: 7.13e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242575133   8 GFVPDFIITLDAEYCRAC------------------------GAPVFTIRGHNVEEFVGVVRRYGANAAgVRAIVDAA 61
Cdd:pfam18894  61 GLDPDFIITLDAEYWDQLddeqkcalvdhellhigqprdfggGRPKLKLRGHDVEEFVGVVRRYGAWEE-VQRLVKAA 137
 
Name Accession Description Interval E-value
PhageMetallopep pfam18894
Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a ...
 8-61 7.13e-15

Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a variety of phage and bacterial proteomes.


Pssm-ID: 465902  Cd Length: 138  Bit Score: 63.50  E-value: 7.13e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242575133   8 GFVPDFIITLDAEYCRAC------------------------GAPVFTIRGHNVEEFVGVVRRYGANAAgVRAIVDAA 61
Cdd:pfam18894  61 GLDPDFIITLDAEYWDQLddeqkcalvdhellhigqprdfggGRPKLKLRGHDVEEFVGVVRRYGAWEE-VQRLVKAA 137
 
Name Accession Description Interval E-value
PhageMetallopep pfam18894
Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a ...
 8-61 7.13e-15

Putative phage metallopeptidase; This entry represents a probable metallopeptidase found in a variety of phage and bacterial proteomes.


Pssm-ID: 465902  Cd Length: 138  Bit Score: 63.50  E-value: 7.13e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1242575133   8 GFVPDFIITLDAEYCRAC------------------------GAPVFTIRGHNVEEFVGVVRRYGANAAgVRAIVDAA 61
Cdd:pfam18894  61 GLDPDFIITLDAEYWDQLddeqkcalvdhellhigqprdfggGRPKLKLRGHDVEEFVGVVRRYGAWEE-VQRLVKAA 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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