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Conserved domains on  [gi|1242568687|gb|ATA89488|]
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hypothetical protein CGC58_06965 [Capnocytophaga stomatis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IPExxxVDY super family cl40337
IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average ...
 9-154 5.85e-47

IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average about 160 amino acids in size, and feature two widely separated invariant Asn residues, as well as the larger (though less invariant) motif for which it is named. Members are found primarily in the Flavobacteriia branch of the Bacteroidetes.


The actual alignment was detected with superfamily member NF033205:

Pssm-ID: 467995  Cd Length: 152  Bit Score: 149.65  E-value: 5.85e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242568687   9 DFLDDDFRLMAIHTTMKDYRLVYFLNKILKIRLSKeSKKKTFVGVDGNADFSYYHWYDESSKINWNCIANKAVTETKMKI 88
Cdd:NF033205    7 DFYEDDFKLIAIHSSLEDYKLAYLLNKLLGINLSR-SKDLDLDFNYNQASFSIFEYEDEEEHVTWYLIANKSKGEEQKVL 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242568687  89 TSLFETTTSVSYLIDNQKKVDFFLKINPEG-RFDEKEIIKKIAAIPDISAIYKIDTDTLSSKHKLIF 154
Cdd:NF033205   86 SSLFEESETTQYLIPELKKVDYFLKIEDTEdQFDLFSLILKLNKIPFIQTAYEIDPEKLKSKENLIF 152
 
Name Accession Description Interval E-value
IPExxxVDY NF033205
IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average ...
 9-154 5.85e-47

IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average about 160 amino acids in size, and feature two widely separated invariant Asn residues, as well as the larger (though less invariant) motif for which it is named. Members are found primarily in the Flavobacteriia branch of the Bacteroidetes.


Pssm-ID: 467995  Cd Length: 152  Bit Score: 149.65  E-value: 5.85e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242568687   9 DFLDDDFRLMAIHTTMKDYRLVYFLNKILKIRLSKeSKKKTFVGVDGNADFSYYHWYDESSKINWNCIANKAVTETKMKI 88
Cdd:NF033205    7 DFYEDDFKLIAIHSSLEDYKLAYLLNKLLGINLSR-SKDLDLDFNYNQASFSIFEYEDEEEHVTWYLIANKSKGEEQKVL 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242568687  89 TSLFETTTSVSYLIDNQKKVDFFLKINPEG-RFDEKEIIKKIAAIPDISAIYKIDTDTLSSKHKLIF 154
Cdd:NF033205   86 SSLFEESETTQYLIPELKKVDYFLKIEDTEdQFDLFSLILKLNKIPFIQTAYEIDPEKLKSKENLIF 152
 
Name Accession Description Interval E-value
IPExxxVDY NF033205
IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average ...
 9-154 5.85e-47

IPExxxVDY family protein; This protein family is uncharacterized. Member proteins average about 160 amino acids in size, and feature two widely separated invariant Asn residues, as well as the larger (though less invariant) motif for which it is named. Members are found primarily in the Flavobacteriia branch of the Bacteroidetes.


Pssm-ID: 467995  Cd Length: 152  Bit Score: 149.65  E-value: 5.85e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242568687   9 DFLDDDFRLMAIHTTMKDYRLVYFLNKILKIRLSKeSKKKTFVGVDGNADFSYYHWYDESSKINWNCIANKAVTETKMKI 88
Cdd:NF033205    7 DFYEDDFKLIAIHSSLEDYKLAYLLNKLLGINLSR-SKDLDLDFNYNQASFSIFEYEDEEEHVTWYLIANKSKGEEQKVL 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1242568687  89 TSLFETTTSVSYLIDNQKKVDFFLKINPEG-RFDEKEIIKKIAAIPDISAIYKIDTDTLSSKHKLIF 154
Cdd:NF033205   86 SSLFEESETTQYLIPELKKVDYFLKIEDTEdQFDLFSLILKLNKIPFIQTAYEIDPEKLKSKENLIF 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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