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Conserved domains on  [gi|1242564822|gb|ATA85625|]
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zinc-dependent metalloprotease [Capnocytophaga sputigena]

Protein Classification

zinc-dependent metalloprotease( domain architecture ID 12182352)

zinc-dependent metalloprotease containing DUF5118, DUF5117 and DUF4953 domains, contains the extended met-zincin motif HExxHxxGxxH/D, with the first two histidines acting as ligands of the catalytic zinc, the glutamate as the general base, a strictly conserved glycine, and a third zinc-binding histidine or aspartate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
 430-739 1.79e-138

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


:

Pssm-ID: 435269  Cd Length: 319  Bit Score: 412.80  E-value: 1.79e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 430 TMEFNEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTPVEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNISSKGLY- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 509 PRIGIYDKWAIEWGYRYYGNKyKDEYAEQEALAEMVtQKLKANPRLWFGGEGK--DEDPRAQTEDLSDNVMKANTYGLKN 586
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFPDA-KTPEEEKAALDKWA-ERSAGDPGLRFGTDQDarGADPRAQTEDLGDDAVKASEYGIKN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 587 LRYIVQHLPEWTKQ-PNDKYEHLDEMQTAAYMQYFRYLKHVLKHIGNRYV--GIIGEKE-VYKEVPKEKVKEAINYLDKE 662
Cdd:pfam16313 159 LKRILPNLPEWTAEkEGEDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYnyKVRGDPGpVYTPVPKEKQKEALDFLLKQ 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 663 LFEAPLWLYPQEIVEKTGAT---PDKNIISMQNLTLSVLLGESTLYTLYNQSL-TSKNPYPLNEYLQDVFKAVWKPLNHS 738
Cdd:pfam16313 239 LFETPEWLLDPNLLNKTRGLdfdPHDRVEALQSRVLSALLSPGRLNRLVEQEArDGDKAYTLAELLDDLRKGIFKELEKA 318


                  .
gi 1242564822 739 D 739
Cdd:pfam16313 319 G 319
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
 109-299 8.00e-72

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


:

Pssm-ID: 465363  Cd Length: 189  Bit Score: 233.66  E-value: 8.00e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 109 GEKVNEQTVYFEQKGD-KTLLLRSFLNLQEAG-TDDNISVAVANSSANPVVASFTVIGRNPKTKAQLIDITDFFKQDNSI 186
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNdKLLLLRNVSYRNVAPdSDAAIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 187 TS-FSSNAKTQMKMGAIANDRSFVDDIRPYPINVEVNALKTFnaspsTIPSANKVGAVTLELNISMVLLPKTPMQKRLFD 265
Cdd:pfam17148  81 FSpLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTY-----TVPGGSSSGPVTVEVNTSLVLLPEEPMKPRLAD 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1242564822 266 PRVGFFATRYIKFSDQQQRTETEYYIHRFRLEPR 299
Cdd:pfam17148 156 PRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
 311-525 1.91e-68

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


:

Pssm-ID: 239803  Cd Length: 197  Bit Score: 224.90  E-value: 1.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 311 LVRPKKQIVFYIDPATPKQWQKYLILGVNDWNVAFEQAGFKEAIVAK--PWPNDPsmslEDARFNVIRYLPSEKS-NAYG 387
Cdd:cd04276     3 LSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKvlPDDADP----GDIRYNVIRWIHSPNGgWAYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 388 PNIADPRSGEIIECHVGWYHNVMKLLNQWYmiqvgavdkrartmefnEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTP 467
Cdd:cd04276    79 PSVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFKASSDGS 141

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1242564822 468 VEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNisSKGLYPRIGIYDKWAIEWGYRY 525
Cdd:cd04276   142 NEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQ--GDYYPPTIGPYDKWAIEYGYTP 197
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
 54-100 6.09e-16

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


:

Pssm-ID: 435758  Cd Length: 50  Bit Score: 72.18  E-value: 6.09e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1242564822  54 YAKLIKKGGIERNGLFTIRKIEEKWYFEVPDSLLNRYLLCVTRLKAA 100
Cdd:pfam17162   4 YDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
 
Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
 430-739 1.79e-138

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


Pssm-ID: 435269  Cd Length: 319  Bit Score: 412.80  E-value: 1.79e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 430 TMEFNEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTPVEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNISSKGLY- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 509 PRIGIYDKWAIEWGYRYYGNKyKDEYAEQEALAEMVtQKLKANPRLWFGGEGK--DEDPRAQTEDLSDNVMKANTYGLKN 586
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFPDA-KTPEEEKAALDKWA-ERSAGDPGLRFGTDQDarGADPRAQTEDLGDDAVKASEYGIKN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 587 LRYIVQHLPEWTKQ-PNDKYEHLDEMQTAAYMQYFRYLKHVLKHIGNRYV--GIIGEKE-VYKEVPKEKVKEAINYLDKE 662
Cdd:pfam16313 159 LKRILPNLPEWTAEkEGEDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYnyKVRGDPGpVYTPVPKEKQKEALDFLLKQ 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 663 LFEAPLWLYPQEIVEKTGAT---PDKNIISMQNLTLSVLLGESTLYTLYNQSL-TSKNPYPLNEYLQDVFKAVWKPLNHS 738
Cdd:pfam16313 239 LFETPEWLLDPNLLNKTRGLdfdPHDRVEALQSRVLSALLSPGRLNRLVEQEArDGDKAYTLAELLDDLRKGIFKELEKA 318


                  .
gi 1242564822 739 D 739
Cdd:pfam16313 319 G 319
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
 109-299 8.00e-72

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


Pssm-ID: 465363  Cd Length: 189  Bit Score: 233.66  E-value: 8.00e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 109 GEKVNEQTVYFEQKGD-KTLLLRSFLNLQEAG-TDDNISVAVANSSANPVVASFTVIGRNPKTKAQLIDITDFFKQDNSI 186
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNdKLLLLRNVSYRNVAPdSDAAIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 187 TS-FSSNAKTQMKMGAIANDRSFVDDIRPYPINVEVNALKTFnaspsTIPSANKVGAVTLELNISMVLLPKTPMQKRLFD 265
Cdd:pfam17148  81 FSpLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTY-----TVPGGSSSGPVTVEVNTSLVLLPEEPMKPRLAD 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1242564822 266 PRVGFFATRYIKFSDQQQRTETEYYIHRFRLEPR 299
Cdd:pfam17148 156 PRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
 311-525 1.91e-68

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239803  Cd Length: 197  Bit Score: 224.90  E-value: 1.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 311 LVRPKKQIVFYIDPATPKQWQKYLILGVNDWNVAFEQAGFKEAIVAK--PWPNDPsmslEDARFNVIRYLPSEKS-NAYG 387
Cdd:cd04276     3 LSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKvlPDDADP----GDIRYNVIRWIHSPNGgWAYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 388 PNIADPRSGEIIECHVGWYHNVMKLLNQWYmiqvgavdkrartmefnEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTP 467
Cdd:cd04276    79 PSVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFKASSDGS 141

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1242564822 468 VEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNisSKGLYPRIGIYDKWAIEWGYRY 525
Cdd:cd04276   142 NEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQ--GDYYPPTIGPYDKWAIEYGYTP 197
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
 54-100 6.09e-16

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


Pssm-ID: 435758  Cd Length: 50  Bit Score: 72.18  E-value: 6.09e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1242564822  54 YAKLIKKGGIERNGLFTIRKIEEKWYFEVPDSLLNRYLLCVTRLKAA 100
Cdd:pfam17162   4 YDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
 
Name Accession Description Interval E-value
DUF4953 pfam16313
Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic ...
 430-739 1.79e-138

Met-zincin; This is a family of uncharacterized proteins that carry the highly characteriztic met-zincin mmotif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.


Pssm-ID: 435269  Cd Length: 319  Bit Score: 412.80  E-value: 1.79e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 430 TMEFNEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTPVEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNISSKGLY- 508
Cdd:pfam16313   1 KMPFPDELMGALLRFVSAHEVGHTLGLRHNFAASSAYPVDSLRDKSFTRKYGTTPSIMDYARFNYVAQPEDQIDLSGLYp 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 509 PRIGIYDKWAIEWGYRYYGNKyKDEYAEQEALAEMVtQKLKANPRLWFGGEGK--DEDPRAQTEDLSDNVMKANTYGLKN 586
Cdd:pfam16313  81 PGIGPYDKWAIEWGYRPFPDA-KTPEEEKAALDKWA-ERSAGDPGLRFGTDQDarGADPRAQTEDLGDDAVKASEYGIKN 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 587 LRYIVQHLPEWTKQ-PNDKYEHLDEMQTAAYMQYFRYLKHVLKHIGNRYV--GIIGEKE-VYKEVPKEKVKEAINYLDKE 662
Cdd:pfam16313 159 LKRILPNLPEWTAEkEGEDYSDLEELYVPVLLQYRRYIGHVAKNIGGVYYnyKVRGDPGpVYTPVPKEKQKEALDFLLKQ 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 663 LFEAPLWLYPQEIVEKTGAT---PDKNIISMQNLTLSVLLGESTLYTLYNQSL-TSKNPYPLNEYLQDVFKAVWKPLNHS 738
Cdd:pfam16313 239 LFETPEWLLDPNLLNKTRGLdfdPHDRVEALQSRVLSALLSPGRLNRLVEQEArDGDKAYTLAELLDDLRKGIFKELEKA 318


                  .
gi 1242564822 739 D 739
Cdd:pfam16313 319 G 319
DUF5117 pfam17148
Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.
 109-299 8.00e-72

Domain of unknown function (DUF5117); This domain may fall upstream of a met-zincin domain.


Pssm-ID: 465363  Cd Length: 189  Bit Score: 233.66  E-value: 8.00e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 109 GEKVNEQTVYFEQKGD-KTLLLRSFLNLQEAG-TDDNISVAVANSSANPVVASFTVIGRNPKTKAQLIDITDFFKQDNSI 186
Cdd:pfam17148   1 GDKVNEQVIRFEKGGNdKLLLLRNVSYRNVAPdSDAAIAKAVKNSNLDPILAAFDIKAYNKDSSAVVIDVTDFFNGDNKL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 187 TS-FSSNAKTQMKMGAIANDRSFVDDIRPYPINVEVNALKTFnaspsTIPSANKVGAVTLELNISMVLLPKTPMQKRLFD 265
Cdd:pfam17148  81 FSpLLPRSKNGLGLGSLDSDRSYIESIKAFPDNIEIRSVLTY-----TVPGGSSSGPVTVEVNTSLVLLPEEPMKPRLAD 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 1242564822 266 PRVGFFATRYIKFSDQQQRTETEYYIHRFRLEPR 299
Cdd:pfam17148 156 PRVGYFTTSYTDFSDDQQKVETKRYITRWRLEPK 189
ZnMc_MMP_like_2 cd04276
Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase ...
 311-525 1.91e-68

Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239803  Cd Length: 197  Bit Score: 224.90  E-value: 1.91e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 311 LVRPKKQIVFYIDPATPKQWQKYLILGVNDWNVAFEQAGFKEAIVAK--PWPNDPsmslEDARFNVIRYLPSEKS-NAYG 387
Cdd:cd04276     3 LSEPKEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKvlPDDADP----GDIRYNVIRWIHSPNGgWAYG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 388 PNIADPRSGEIIECHVGWYHNVMKLLNQWYmiqvgavdkrartmefnEELMGDLIRFVSSHEIGHCLGLRHNMGASSQTP 467
Cdd:cd04276    79 PSVVDPRTGEILKADVILYSGFLRQDQLWY-----------------EDLLAASLRYLLAHEVGHTLGLRHNFKASSDGS 141

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1242564822 468 VEKLRDKKWVEANGHTASIMDYARFNYVAQPEDNisSKGLYPRIGIYDKWAIEWGYRY 525
Cdd:cd04276   142 NEELEDPLGTKEKGATSSVMDYPPPNVAAQGEDQ--GDYYPPTIGPYDKWAIEYGYTP 197
ZnMc_MMP_like cd04268
Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix ...
 315-523 1.44e-37

Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.


Pssm-ID: 239796 [Multi-domain]  Cd Length: 165  Bit Score: 138.01  E-value: 1.44e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 315 KKQIVFYIDPATPKQWQKYLILGVNDWNVAFeQAGFKEAIVAKPwpndpsmslEDARFNVIRYLPSEKS-NAYGPNIADP 393
Cdd:cd04268     1 KKPITYYIDDSVPDKLRAAILDAIEAWNKAF-AIGFKNANDVDP---------ADIRYSVIRWIPYNDGtWSYGPSQVDP 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242564822 394 RSGEIIECHVGWYHNVMkllnqwymiqvgavdkrartmefneELMGDLIRFVSSHEIGHCLGLRHNMGASSQTPVEKLRD 473
Cdd:cd04268    71 LTGEILLARVYLYSSFV-------------------------EYSGARLRNTAEHELGHALGLRHNFAASDRDDNVDLLA 125

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1242564822 474 KKwveanGHTASIMDYARFNYVAQPEDNIsskglYPRIGIYDKWAIEWGY 523
Cdd:cd04268   126 EK-----GDTSSVMDYAPSNFSIQLGDGQ-----KYTIGPYDIAAIKKLY 165
DUF5118 pfam17162
Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.
 54-100 6.09e-16

Domain of unknown function (DUF5118); This domain falls upstream of a met-zincin domain.


Pssm-ID: 435758  Cd Length: 50  Bit Score: 72.18  E-value: 6.09e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1242564822  54 YAKLIKKGGIERNGLFTIRKIEEKWYFEVPDSLLNRYLLCVTRLKAA 100
Cdd:pfam17162   4 YDKVIKKKAKTKKGLFTVHKKDDKYYFEIPDSLLGRDMLVVTRIAKT 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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