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Conserved domains on  [gi|1242552753|gb|ATA73561|]
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hypothetical protein CGC49_09875 [Capnocytophaga sp. H4358]

Protein Classification

DUF4091 domain-containing protein( domain architecture ID 10594704)

DUF4091 domain-containing protein similar to Clostridium perfringens beta-N-acetylgalactosaminidase, a glycoside hydrolase from the carbohydrate active enzyme family GH123

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4091 pfam13320
Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. ...
 492-552 6.81e-20

Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


:

Pssm-ID: 463843  Cd Length: 66  Bit Score: 83.77  E-value: 6.81e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242552753 492 NLDGYLRWALNSWTIEPLLDSRFVSW-AAGDTYLTYP----LGRSSIRMERMIEGIQNYEKVRILR 552
Cdd:pfam13320   1 GLDGFLRWGYNFWPEDPYTDTRARGWfPAGDGFLVYPgedgGPVSSLRLEALREGIQDYEKLKLLE 66
DUF6067 super family cl44955
Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. ...
 88-228 5.83e-05

Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. This family of proteins is mainly found in bacteria.


The actual alignment was detected with superfamily member pfam19543:

Pssm-ID: 437375  Cd Length: 967  Bit Score: 46.06  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242552753  88 TAWKGERISGQIVVVNANKDAE-ISVDISDFRHTKlknnlkKEHISADFIRYVMTDELNKDGKGgcgyrtainfdstlva 166
Cdd:pfam19543 195 TAQKGEYYAFQLGVYAAKQDLKnVKVEFSDLKSKN------GNVIPASAITCFNTGGVDYDGKP---------------- 252

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242552753 167 daidhYAKKLVIPAQTSRGIWVKVQVPQNVVSGSYKGFISVKNKGKVFQKLSLEIKVLDRVL 228
Cdd:pfam19543 253 -----FTKEVNVAKGKVQALWCGVDIPEDAAAGTYKGTVTVSAEGGAAQEVKVTLTVSDKVL 309
 
Name Accession Description Interval E-value
DUF4091 pfam13320
Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. ...
 492-552 6.81e-20

Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 463843  Cd Length: 66  Bit Score: 83.77  E-value: 6.81e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242552753 492 NLDGYLRWALNSWTIEPLLDSRFVSW-AAGDTYLTYP----LGRSSIRMERMIEGIQNYEKVRILR 552
Cdd:pfam13320   1 GLDGFLRWGYNFWPEDPYTDTRARGWfPAGDGFLVYPgedgGPVSSLRLEALREGIQDYEKLKLLE 66
DUF6067 pfam19543
Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. ...
 88-228 5.83e-05

Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. This family of proteins is mainly found in bacteria.


Pssm-ID: 437375  Cd Length: 967  Bit Score: 46.06  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242552753  88 TAWKGERISGQIVVVNANKDAE-ISVDISDFRHTKlknnlkKEHISADFIRYVMTDELNKDGKGgcgyrtainfdstlva 166
Cdd:pfam19543 195 TAQKGEYYAFQLGVYAAKQDLKnVKVEFSDLKSKN------GNVIPASAITCFNTGGVDYDGKP---------------- 252

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242552753 167 daidhYAKKLVIPAQTSRGIWVKVQVPQNVVSGSYKGFISVKNKGKVFQKLSLEIKVLDRVL 228
Cdd:pfam19543 253 -----FTKEVNVAKGKVQALWCGVDIPEDAAAGTYKGTVTVSAEGGAAQEVKVTLTVSDKVL 309
 
Name Accession Description Interval E-value
DUF4091 pfam13320
Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. ...
 492-552 6.81e-20

Domain of unknown function (DUF4091); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.


Pssm-ID: 463843  Cd Length: 66  Bit Score: 83.77  E-value: 6.81e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1242552753 492 NLDGYLRWALNSWTIEPLLDSRFVSW-AAGDTYLTYP----LGRSSIRMERMIEGIQNYEKVRILR 552
Cdd:pfam13320   1 GLDGFLRWGYNFWPEDPYTDTRARGWfPAGDGFLVYPgedgGPVSSLRLEALREGIQDYEKLKLLE 66
DUF6067 pfam19543
Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. ...
 88-228 5.83e-05

Family of unknown function (DUF6067); This family of proteins is functionally uncharacterized. This family of proteins is mainly found in bacteria.


Pssm-ID: 437375  Cd Length: 967  Bit Score: 46.06  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1242552753  88 TAWKGERISGQIVVVNANKDAE-ISVDISDFRHTKlknnlkKEHISADFIRYVMTDELNKDGKGgcgyrtainfdstlva 166
Cdd:pfam19543 195 TAQKGEYYAFQLGVYAAKQDLKnVKVEFSDLKSKN------GNVIPASAITCFNTGGVDYDGKP---------------- 252

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1242552753 167 daidhYAKKLVIPAQTSRGIWVKVQVPQNVVSGSYKGFISVKNKGKVFQKLSLEIKVLDRVL 228
Cdd:pfam19543 253 -----FTKEVNVAKGKVQALWCGVDIPEDAAAGTYKGTVTVSAEGGAAQEVKVTLTVSDKVL 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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