|
Name |
Accession |
Description |
Interval |
E-value |
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
177-526 |
4.82e-21 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 98.51 E-value: 4.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 177 RRPAIDLPGFQRVLAEAEERIERVQAGEA--DPSVLLLCVAAMPQGTGRtewsrltAIAHAGPAAGVFLLLAGYPPPQHP 254
Cdd:TIGR03924 246 RLVYTSLAELEAALAELLADRGRFSPDDAasLPHLVVVVDGGDLPGWED-------LIGESGLDGVTVIDLGGSLPGLPD 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 255 GLDAVPRLErtthltatgDGSFQVSDPPGPYRFSDDGTGLAVpmrldsgppdELVEAVCRRLAK----AARVQAST---- 326
Cdd:TIGR03924 319 RRGLRLVVE---------ADRLDARTADGVEEFGVAPDQLSI----------AEAEALARRLARwraaTAGTVDAPltga 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 327 ----------DFTALMPAEMWQESS-VEGLRTVVGRDGRAECV------LALDDATPHWLVGGRTGSGKTVFLLDVLYGL 389
Cdd:TIGR03924 380 rdllellgigDPATLDVDRLWRPRPgRDRLRVPIGVGDDGEPVeldlkeSAEGGMGPHGLCIGATGSGKSELLRTLVLGL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 390 ASRYSPDELGLYLLDFKEGVSFAEFTPtavdpswIPHarTVGIESDREYGLA----VLRTLSREMTRRASELKRAGvtKL 465
Cdd:TIGR03924 460 AATHSPEQLNLVLVDFKGGATFLGLEG-------LPH--VSAVITNLADEAPlvdrMQDALAGEMNRRQELLRAAG--NF 528
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239658286 466 ADLR-------TGRPDVAMPRLVAVIDEFHVLFegndAVARQAVALLEELARKGRSYGIHLVLASQTI 526
Cdd:TIGR03924 529 ANVAeyekaraAGADLPPLPALFVVVDEFSELL----SQHPDFADLFVAIGRLGRSLGVHLLLASQRL 592
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
330-527 |
2.04e-18 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 84.74 E-value: 2.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 330 ALMPAEMWQESSVegLRTVVGRDGRAECVLA-LDDATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKeG 408
Cdd:pfam01580 4 VLESKPFDTDYSR--LPIALGKDISGNPEVFdLKKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPK-M 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 409 VSFAEFTPtavdpswIPHARTVGIESDREYGLAVLRTLSREMTRRASELKRAGVTKLADLRTGRPDVAM----------- 477
Cdd:pfam01580 81 GELSAYED-------IPHLLSVPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLdgfgdvflviy 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1239658286 478 ---------------PRLVAVIDEFH--VLFEGNDAVARQaVALLEELARKGRSYGIHLVLASQTIS 527
Cdd:pfam01580 154 gvhvmctagrwleilPYLVVIVDERAelRLAAPKDSEMRV-EDAIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
366-566 |
4.73e-14 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 76.12 E-value: 4.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 366 PHWLVGGRTGSGKTVF----LLDVLYglasRYSPDELGLYLLDFK-------EGvsfaeftptavdpswIPHARTvGIES 434
Cdd:COG1674 282 PHLLIAGATGSGKSVCinamILSLLY----KATPDEVRLILIDPKmvelsvyNG---------------IPHLLT-PVVT 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 435 DREYGLAVLRTLSREMTRRASELKRAGVTKLAD-----------LRTGRPDVAMPRLVAVIDEFHVLF-----EGNDAVA 498
Cdd:COG1674 342 DPKKAANALKWAVREMERRYKLFAKAGVRNIAGynekvreakakGEEEEGLEPLPYIVVIIDELADLMmvagkEVEEAIA 421
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239658286 499 RqavalleeLARKGRSYGIHLVLASQT-----ISGVealfaktesIFGQFPLRIALAGGGG-----ILDQLndGADNL 566
Cdd:COG1674 422 R--------LAQKARAAGIHLILATQRpsvdvITGL---------IKANIPSRIAFAVSSKidsrtILDQG--GAEKL 480
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
345-566 |
2.49e-12 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 71.27 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 345 LRTVVGRDGRAECVLALDDATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPdelglylldfkEGVSFAEFTPTAVDPS-- 422
Cdd:PRK10263 990 LTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQP-----------EDVRFIMIDPKMLELSvy 1058
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 423 -WIPHARTvGIESDREYGLAVLRTLSREMTRRASELKRAGVTKLADL--------RTGRP------------DV------ 475
Cdd:PRK10263 1059 eGIPHLLT-EVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYnekiaeadRMMRPipdpywkpgdsmDAqhpvlk 1137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 476 AMPRLVAVIDEFHVLFEgndAVARQAVALLEELARKGRSYGIHLVLASQTISgVEALfakTESIFGQFPLRIALAGGGG- 554
Cdd:PRK10263 1138 KEPYIVVLVDEFADLMM---TVGKKVEELIARLAQKARAAGIHLVLATQRPS-VDVI---TGLIKANIPTRIAFTVSSKi 1210
|
250
....*....|....*.
gi 1239658286 555 ----ILDQlnDGADNL 566
Cdd:PRK10263 1211 dsrtILDQ--AGAESL 1224
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
367-551 |
1.84e-11 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 62.62 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 367 HWLVGGRTGSGKTVFLLDVLYGLASRYSPdelgLYLLDFKegvsfaeftptavDPSWIphartvgIESDREYGLAVLRTL 446
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGGS----VIITDPK-------------GELFL-------VIPDRDDSFAALRAL 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 447 SREMTRRAselkragVTKLADLRTGRPDvamPRLVAVIDEFHVLfegndavarQAVALLEELARKGRSYGIHLVLASQTI 526
Cdd:cd01127 57 FFNQLFRA-------LTELASLSPGRLP---RRVWFILDEFANL---------GRIPNLPNLLATGRKRGISVVLILQSL 117
|
170 180
....*....|....*....|....*..
gi 1239658286 527 SGVEALFAK--TESIFGQFPLRIALAG 551
Cdd:cd01127 118 AQLEAVYGKdgAQTILGNCNTKLYLGT 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
177-526 |
4.82e-21 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 98.51 E-value: 4.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 177 RRPAIDLPGFQRVLAEAEERIERVQAGEA--DPSVLLLCVAAMPQGTGRtewsrltAIAHAGPAAGVFLLLAGYPPPQHP 254
Cdd:TIGR03924 246 RLVYTSLAELEAALAELLADRGRFSPDDAasLPHLVVVVDGGDLPGWED-------LIGESGLDGVTVIDLGGSLPGLPD 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 255 GLDAVPRLErtthltatgDGSFQVSDPPGPYRFSDDGTGLAVpmrldsgppdELVEAVCRRLAK----AARVQAST---- 326
Cdd:TIGR03924 319 RRGLRLVVE---------ADRLDARTADGVEEFGVAPDQLSI----------AEAEALARRLARwraaTAGTVDAPltga 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 327 ----------DFTALMPAEMWQESS-VEGLRTVVGRDGRAECV------LALDDATPHWLVGGRTGSGKTVFLLDVLYGL 389
Cdd:TIGR03924 380 rdllellgigDPATLDVDRLWRPRPgRDRLRVPIGVGDDGEPVeldlkeSAEGGMGPHGLCIGATGSGKSELLRTLVLGL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 390 ASRYSPDELGLYLLDFKEGVSFAEFTPtavdpswIPHarTVGIESDREYGLA----VLRTLSREMTRRASELKRAGvtKL 465
Cdd:TIGR03924 460 AATHSPEQLNLVLVDFKGGATFLGLEG-------LPH--VSAVITNLADEAPlvdrMQDALAGEMNRRQELLRAAG--NF 528
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239658286 466 ADLR-------TGRPDVAMPRLVAVIDEFHVLFegndAVARQAVALLEELARKGRSYGIHLVLASQTI 526
Cdd:TIGR03924 529 ANVAeyekaraAGADLPPLPALFVVVDEFSELL----SQHPDFADLFVAIGRLGRSLGVHLLLASQRL 592
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
330-527 |
2.04e-18 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 84.74 E-value: 2.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 330 ALMPAEMWQESSVegLRTVVGRDGRAECVLA-LDDATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKeG 408
Cdd:pfam01580 4 VLESKPFDTDYSR--LPIALGKDISGNPEVFdLKKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPK-M 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 409 VSFAEFTPtavdpswIPHARTVGIESDREYGLAVLRTLSREMTRRASELKRAGVTKLADLRTGRPDVAM----------- 477
Cdd:pfam01580 81 GELSAYED-------IPHLLSVPVATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYNGEIAEDPLdgfgdvflviy 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1239658286 478 ---------------PRLVAVIDEFH--VLFEGNDAVARQaVALLEELARKGRSYGIHLVLASQTIS 527
Cdd:pfam01580 154 gvhvmctagrwleilPYLVVIVDERAelRLAAPKDSEMRV-EDAIVRLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
366-566 |
4.73e-14 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 76.12 E-value: 4.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 366 PHWLVGGRTGSGKTVF----LLDVLYglasRYSPDELGLYLLDFK-------EGvsfaeftptavdpswIPHARTvGIES 434
Cdd:COG1674 282 PHLLIAGATGSGKSVCinamILSLLY----KATPDEVRLILIDPKmvelsvyNG---------------IPHLLT-PVVT 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 435 DREYGLAVLRTLSREMTRRASELKRAGVTKLAD-----------LRTGRPDVAMPRLVAVIDEFHVLF-----EGNDAVA 498
Cdd:COG1674 342 DPKKAANALKWAVREMERRYKLFAKAGVRNIAGynekvreakakGEEEEGLEPLPYIVVIIDELADLMmvagkEVEEAIA 421
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1239658286 499 RqavalleeLARKGRSYGIHLVLASQT-----ISGVealfaktesIFGQFPLRIALAGGGG-----ILDQLndGADNL 566
Cdd:COG1674 422 R--------LAQKARAAGIHLILATQRpsvdvITGL---------IKANIPSRIAFAVSSKidsrtILDQG--GAEKL 480
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
367-549 |
3.37e-13 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 73.87 E-value: 3.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 367 HWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKEGvSFAEFTPtavdpswIPH-ARTVGIESDREYGLAVlRT 445
Cdd:TIGR03928 812 HLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTN-GLLPLKK-------LPHvADYFTLDEEEKIEKLI-RR 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 446 LSREMTRRASELKRAGVTKLADLR--TGRPdvaMPRLVAVIDEFHVLfeGNDAVARQAVALLEELARKGRSYGIHLVLas 523
Cdd:TIGR03928 883 IKKEIDRRKKLFSEYGVASISMYNkaSGEK---LPQIVIIIDNYDAV--KEEPFYEDFEELLIQLAREGASLGIYLVM-- 955
|
170 180
....*....|....*....|....*.
gi 1239658286 524 qTISGVEALFAKtesIFGQFPLRIAL 549
Cdd:TIGR03928 956 -TAGRQNAVRMP---LMNNIKTKIAL 977
|
|
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
366-529 |
4.90e-13 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 73.48 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 366 PHWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKEG---VSFAEftptavdpswIPHAR-TV----GIESDRe 437
Cdd:TIGR03928 470 PHGLVAGTTGSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGgmaNLFKN----------LPHLLgTItnldGAQSMR- 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 438 yGLAVLRTlsrEMTRRASELKRAGVTKLAD----LRTGRPDVAMPRLVAVIDEFHVL------FegndavarqavalLEE 507
Cdd:TIGR03928 539 -ALASIKA---ELKKRQRLFGENNVNHINQyqklYKQGKAKEPMPHLFLISDEFAELkseqpeF-------------MKE 601
|
170 180
....*....|....*....|....*
gi 1239658286 508 L---ARKGRSYGIHLVLASQTISGV 529
Cdd:TIGR03928 602 LvstARIGRSLGVHLILATQKPSGV 626
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
345-566 |
2.49e-12 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 71.27 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 345 LRTVVGRDGRAECVLALDDATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPdelglylldfkEGVSFAEFTPTAVDPS-- 422
Cdd:PRK10263 990 LTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQP-----------EDVRFIMIDPKMLELSvy 1058
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 423 -WIPHARTvGIESDREYGLAVLRTLSREMTRRASELKRAGVTKLADL--------RTGRP------------DV------ 475
Cdd:PRK10263 1059 eGIPHLLT-EVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYnekiaeadRMMRPipdpywkpgdsmDAqhpvlk 1137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 476 AMPRLVAVIDEFHVLFEgndAVARQAVALLEELARKGRSYGIHLVLASQTISgVEALfakTESIFGQFPLRIALAGGGG- 554
Cdd:PRK10263 1138 KEPYIVVLVDEFADLMM---TVGKKVEELIARLAQKARAAGIHLVLATQRPS-VDVI---TGLIKANIPTRIAFTVSSKi 1210
|
250
....*....|....*.
gi 1239658286 555 ----ILDQlnDGADNL 566
Cdd:PRK10263 1211 dsrtILDQ--AGAESL 1224
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
367-551 |
1.84e-11 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 62.62 E-value: 1.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 367 HWLVGGRTGSGKTVFLLDVLYGLASRYSPdelgLYLLDFKegvsfaeftptavDPSWIphartvgIESDREYGLAVLRTL 446
Cdd:cd01127 1 NTLVLGTTGSGKTTSIVIPLLDQAARGGS----VIITDPK-------------GELFL-------VIPDRDDSFAALRAL 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 447 SREMTRRAselkragVTKLADLRTGRPDvamPRLVAVIDEFHVLfegndavarQAVALLEELARKGRSYGIHLVLASQTI 526
Cdd:cd01127 57 FFNQLFRA-------LTELASLSPGRLP---RRVWFILDEFANL---------GRIPNLPNLLATGRKRGISVVLILQSL 117
|
170 180
....*....|....*....|....*..
gi 1239658286 527 SGVEALFAK--TESIFGQFPLRIALAG 551
Cdd:cd01127 118 AQLEAVYGKdgAQTILGNCNTKLYLGT 144
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
469-549 |
5.63e-08 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 55.77 E-value: 5.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 469 RTGRPDVAMPRLVAVIDEFHVLFEGNDAVARQAvalLEELARKGRSYGIHLVLASQTISGVEalfaktESIFGQFPLRIA 548
Cdd:COG0433 249 EVGDADDRKLPLVLVIDEAHLLAPAAPSALLEI---LERIAREGRKFGVGLILATQRPSDID------EDVLSQLGTQII 319
|
.
gi 1239658286 549 L 549
Cdd:COG0433 320 L 320
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
354-522 |
1.58e-07 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 55.00 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 354 RAECVLALDDATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKEGvsfaeftpTAVDPSWIPHARTVGIE 433
Cdd:TIGR03925 68 QDPLVVDLSGAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGG--------GLASLADLPHVGGVAGR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 434 SDREYGLAVLRTLSREMTRRASELKRAGVTKLADLRTGR-----PDVAMPRLVAVIDEFHVLFEGNDAVArqavALLEEL 508
Cdd:TIGR03925 140 LDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARRaagrlPEDPFGDVFLVIDGWGTLRQDFEDLE----DKVTDL 215
|
170
....*....|....
gi 1239658286 509 ARKGRSYGIHLVLA 522
Cdd:TIGR03925 216 AARGLAYGVHVVLT 229
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
441-552 |
1.11e-05 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 48.83 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 441 AVLRTLSREMTRRASelkragvtkladlRTGRPDvamPRLVAVIDEFHVLfegndavarQAVALLEELARKGRSYGIHLV 520
Cdd:COG3505 226 LLLSQLIRALLRRAE-------------RSGRLP---RPVLLLLDEFANL---------GRLPSLETLLATGRGYGIRLV 280
|
90 100 110
....*....|....*....|....*....|....
gi 1239658286 521 LASQTISGVEALF--AKTESIFGQFPLRIALAGG 552
Cdd:COG3505 281 LILQSLAQLEAIYgeEGAETILGNCGTKIFLGVN 314
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
331-533 |
2.80e-05 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 47.68 E-value: 2.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 331 LMPAEMWQESSVEGLRTVVGRDGRAECVLALD-DATPHWLVGGRTGSGKTVFLLDVLYGLASRYSPDELGLYLLDFKEGV 409
Cdd:TIGR03925 328 LPLSALPAGGGAPRLRVPLGLGESDLAPVYVDfAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRRTL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 410 SfaeftpTAVDPSWIphartVGIESDREYGLAVLRTLSREMTRRaseLKRAGVTKlADLR-----TGrpdvamPRLVAVI 484
Cdd:TIGR03925 408 L------GAVPEDYL-----AGYAATSAALTELIAALAALLERR---LPGPDVTP-QQLRarswwSG------PEIYVVV 466
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1239658286 485 DEFHVLFEGNDavarQAVALLEELARKGRSYGIHLVLASQTISGVEALF 533
Cdd:TIGR03925 467 DDYDLVATGSG----NPLAPLVELLPHARDIGLHVVVARRSGGAARALM 511
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
389-549 |
4.41e-05 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 47.25 E-value: 4.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 389 LASRYSPDELGLYLLDFKEGVSFAEF--TPTAVDpswIPHARTVGIEsdreyglavLRTLSREmtrraSELKRAGVT--- 463
Cdd:COG3451 330 LKEQPEAKDLAARLEPYTKGGSYGWLfdGPTNLD---LSDARFVVFD---------LTELLDN-----PELRPPVLLyll 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 464 -----KLADLRTGRPdvamprLVAVIDEFHVLFeGNDAVArqavALLEELARKGRSYGIHLVLASQTISGVEALfAKTES 538
Cdd:COG3451 393 hriwnRLRKNNDGRP------TLIVIDEAWLLL-DNPAFA----EFLEEWLKTLRKYNGAVIFATQSVEDFLSS-PIAEA 460
|
170
....*....|.
gi 1239658286 539 IFGQFPLRIAL 549
Cdd:COG3451 461 IIENSATKILL 471
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
479-552 |
6.87e-05 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 43.41 E-value: 6.87e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1239658286 479 RLVAVIDEFhvlfeGNdaVARqaVALLEELARKGRSYGIHLVLASQTISGVEALF--AKTESIFGQFPLRIALAGG 552
Cdd:pfam12696 1 PVLFVLDEF-----AN--LGK--IPDLEKLISTGRSRGISLMLILQSIAQLEELYgkDGAETILGNCNTKVFLGGG 67
|
|
| ATPase |
pfam06745 |
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ... |
369-531 |
1.80e-03 |
|
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Pssm-ID: 429095 [Multi-domain] Cd Length: 231 Bit Score: 40.69 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 369 LVGGRTGSGKTVFLLDVLYGLASRYspDELGLYlldfkegVSFAEfTPTAVdpswIPHARTVGIESDR--EYGLAVLRTL 446
Cdd:pfam06745 23 LITGGPGTGKTIFGLQFLYNGALKY--GEPGVF-------VTLEE-PPEDL----RENARSFGWDLEKleEEGKLAIIDA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1239658286 447 SREMTRRASELKRAGVTKLAD-LRTGRPDVAMPRLvaVIDEFHVLF-EGNDAVARQavaLLEELARKGRSYGIHLVLASQ 524
Cdd:pfam06745 89 STSGIGIAEVEDRFDLEELIErLREAIREIGAKRV--VIDSITTLFyLLKPAVARE---ILRRLKRVLKGLGVTAIFTSE 163
|
....*..
gi 1239658286 525 TISGVEA 531
Cdd:pfam06745 164 KPSGEGG 170
|
|
| |
