|
Name |
Accession |
Description |
Interval |
E-value |
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
8-245 |
3.47e-113 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 324.41 E-value: 3.47e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 8 ERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPiQKGKIVDLCTGNGIVPLLLSTRS-KADILGVEIQERLHDMAVR 86
Cdd:COG4123 1 ERLDGFLFKQFRIIQPRCGYRFGTDAVLLAAFAPVK-KGGRVLDLGTGTGVIALMLAQRSpGARITGVEIQPEAAELARR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 87 SVEYNTLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKtPKQTEQNMNEHLRIARHEIHCTLEDVISVSSKLLKQGG 166
Cdd:COG4123 80 NVALNGLEDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFK-AGSGRKSPDEARAIARHEDALTLEDLIRAAARLLKPGG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238734565 167 KAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQNEYTKEIRTILYG 245
Cdd:COG4123 159 RFALIHPAERLAEILAALRKYGLGPKRLRPVHPRPGKPAKRVLLEARKGGRAGLRILPPLVIHDEDGEYTPEVKALLRD 237
|
|
| PRK09328 |
PRK09328 |
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional |
45-170 |
7.57e-08 |
|
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Pssm-ID: 236467 [Multi-domain] Cd Length: 275 Bit Score: 51.70 E-value: 7.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 45 QKGKIVDLCTGNGIVPL-LLSTRSKADILGVEIQERLHDMAVRSVEYNtLDDQIQIIHDDLknmPEKLGHNRYDVVTCNP 123
Cdd:PRK09328 108 EPLRVLDLGTGSGAIALaLAKERPDAEVTAVDISPEALAVARRNAKHG-LGARVEFLQGDW---FEPLPGGRFDLIVSNP 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238734565 124 PYfktpkqteqnmnehlrIARHEIHCTLEDV----------------------ISVSSKLLKQGGKAAL 170
Cdd:PRK09328 184 PY----------------IPEADIHLLQPEVrdhephlalfggedgldfyrriIEQAPRYLKPGGWLLL 236
|
|
| L3_gln_methyl |
TIGR03533 |
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Members of this ... |
49-125 |
1.71e-07 |
|
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 274633 [Multi-domain] Cd Length: 284 Bit Score: 50.97 E-value: 1.71e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238734565 49 IVDLCTGNGIVPLLLSTR-SKADILGVEIQERLHDMAVRSVEYNTLDDQIQIIHDDLKnmpEKLGHNRYDVVTCNPPY 125
Cdd:TIGR03533 125 ILDLCTGSGCIAIACAYAfPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF---AALPGRKYDLIVSNPPY 199
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
49-122 |
5.20e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 46.79 E-value: 5.20e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1238734565 49 IVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNTLddQIQIIHDDLKNMPekLGHNRYDVVTCN 122
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDLP--FPDGSFDLVVSS 70
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
48-171 |
1.10e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 45.88 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 48 KIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNtLDDQIQIIHDDLkNMPEKLGHNRYDVVTCNPPYfk 127
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDA-EELPPEADESFDVIISDPPL-- 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1238734565 128 tpkqteqnmnehlriarHEIHCTLEDVISVSSKLLKQGGKAALV 171
Cdd:cd02440 77 -----------------HHLVEDLARFLEEARRLLKPGGVLVLT 103
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
8-245 |
3.47e-113 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 324.41 E-value: 3.47e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 8 ERLDYLLAEDMKIIQSPTVFAFSLDAVLLSKFAYVPiQKGKIVDLCTGNGIVPLLLSTRS-KADILGVEIQERLHDMAVR 86
Cdd:COG4123 1 ERLDGFLFKQFRIIQPRCGYRFGTDAVLLAAFAPVK-KGGRVLDLGTGTGVIALMLAQRSpGARITGVEIQPEAAELARR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 87 SVEYNTLDDQIQIIHDDLKNMPEKLGHNRYDVVTCNPPYFKtPKQTEQNMNEHLRIARHEIHCTLEDVISVSSKLLKQGG 166
Cdd:COG4123 80 NVALNGLEDRITVIHGDLKEFAAELPPGSFDLVVSNPPYFK-AGSGRKSPDEARAIARHEDALTLEDLIRAAARLLKPGG 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238734565 167 KAALVHRPGRLLEIFELMKAYQIEPKRVQFVYPKQGKEANTILVEGIKGGRPDLKILPPLFVYDEQNEYTKEIRTILYG 245
Cdd:COG4123 159 RFALIHPAERLAEILAALRKYGLGPKRLRPVHPRPGKPAKRVLLEARKGGRAGLRILPPLVIHDEDGEYTPEVKALLRD 237
|
|
| HemK |
COG2890 |
Methylase of polypeptide chain release factors [Translation, ribosomal structure and ... |
45-125 |
4.90e-10 |
|
Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442135 [Multi-domain] Cd Length: 282 Bit Score: 58.24 E-value: 4.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 45 QKGKIVDLCTGNGIVPL-LLSTRSKADILGVEIQERLHDMAVRSVEYNTLDDQIQIIHDDL-KNMPeklGHNRYDVVTCN 122
Cdd:COG2890 112 APPRVLDLGTGSGAIALaLAKERPDARVTAVDISPDALAVARRNAERLGLEDRVRFLQGDLfEPLP---GDGRFDLIVSN 188
|
...
gi 1238734565 123 PPY 125
Cdd:COG2890 189 PPY 191
|
|
| RsmC |
COG2813 |
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
13-125 |
3.93e-09 |
|
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 442062 [Multi-domain] Cd Length: 191 Bit Score: 54.81 E-value: 3.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 13 LLAEDMKIIQSPTVFAF-SLD---AVLLSKFAyvPIQKGKIVDLCTGNGIVPLLLSTRS-KADILGVEIQERlhdmAVRS 87
Cdd:COG2813 15 LAGRDLTFVTLPGVFSRdRLDigtRLLLEHLP--EPLGGRVLDLGCGYGVIGLALAKRNpEARVTLVDVNAR----AVEL 88
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1238734565 88 ----VEYNTLDDqIQIIHDDLknmPEKLGHNRYDVVTCNPPY 125
Cdd:COG2813 89 aranAAANGLEN-VEVLWSDG---LSGVPDGSFDLILSNPPF 126
|
|
| PRK09328 |
PRK09328 |
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional |
45-170 |
7.57e-08 |
|
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Pssm-ID: 236467 [Multi-domain] Cd Length: 275 Bit Score: 51.70 E-value: 7.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 45 QKGKIVDLCTGNGIVPL-LLSTRSKADILGVEIQERLHDMAVRSVEYNtLDDQIQIIHDDLknmPEKLGHNRYDVVTCNP 123
Cdd:PRK09328 108 EPLRVLDLGTGSGAIALaLAKERPDAEVTAVDISPEALAVARRNAKHG-LGARVEFLQGDW---FEPLPGGRFDLIVSNP 183
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238734565 124 PYfktpkqteqnmnehlrIARHEIHCTLEDV----------------------ISVSSKLLKQGGKAAL 170
Cdd:PRK09328 184 PY----------------IPEADIHLLQPEVrdhephlalfggedgldfyrriIEQAPRYLKPGGWLLL 236
|
|
| L3_gln_methyl |
TIGR03533 |
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Members of this ... |
49-125 |
1.71e-07 |
|
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Pssm-ID: 274633 [Multi-domain] Cd Length: 284 Bit Score: 50.97 E-value: 1.71e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1238734565 49 IVDLCTGNGIVPLLLSTR-SKADILGVEIQERLHDMAVRSVEYNTLDDQIQIIHDDLKnmpEKLGHNRYDVVTCNPPY 125
Cdd:TIGR03533 125 ILDLCTGSGCIAIACAYAfPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF---AALPGRKYDLIVSNPPY 199
|
|
| hemK_fam |
TIGR00536 |
HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme ... |
48-166 |
2.15e-07 |
|
HemK family putative methylases; The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase. Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. [Protein fate, Protein modification and repair]
Pssm-ID: 273125 [Multi-domain] Cd Length: 284 Bit Score: 50.43 E-value: 2.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 48 KIVDLCTGNGIVPL-LLSTRSKADILGVEIQERLHDMAVRSVEYNTLDDQIQIIHDDL-KNMPeklgHNRYDVVTCNPPY 125
Cdd:TIGR00536 117 HILDLGTGSGCIALaLAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLfEPLA----GQKIDIIVSNPPY 192
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1238734565 126 FKtpkqtEQNMNEHLRIARHEIHCTL----------EDVISVSSKLLKQGG 166
Cdd:TIGR00536 193 ID-----EEDLADLPNVVRFEPLLALvggddglnilRQIIELAPDYLKPNG 238
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
49-122 |
5.20e-07 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 46.79 E-value: 5.20e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1238734565 49 IVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNTLddQIQIIHDDLKNMPekLGHNRYDVVTCN 122
Cdd:pfam13649 1 VLDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDLP--FPDGSFDLVVSS 70
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
48-171 |
1.10e-06 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 45.88 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 48 KIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNtLDDQIQIIHDDLkNMPEKLGHNRYDVVTCNPPYfk 127
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDA-EELPPEADESFDVIISDPPL-- 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1238734565 128 tpkqteqnmnehlriarHEIHCTLEDVISVSSKLLKQGGKAALV 171
Cdd:cd02440 77 -----------------HHLVEDLARFLEEARRLLKPGGVLVLT 103
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
17-171 |
1.35e-06 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 47.20 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 17 DMKIIQSPTVFAF-SLD---AVLLSKFAyvPIQKGKIVDLCTGNGIVPLLLSTRS-KADILGVEIQERlhdmAVRSVEYN 91
Cdd:pfam05175 1 ELTFKTLPGVFSHgRLDigsRLLLEHLP--KDLSGKVLDLGCGAGVLGAALAKESpDAELTMVDINAR----ALESAREN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 92 TLD---DQIQIIHDDLKnmpEKLGHNRYDVVTCNPPyFKTPKQTeqnmneHLRIArHEIhctledvISVSSKLLKQGGKA 168
Cdd:pfam05175 75 LAAnglENGEVVASDVY---SGVEDGKFDLIISNPP-FHAGLAT------TYNVA-QRF-------IADAKRHLRPGGEL 136
|
...
gi 1238734565 169 ALV 171
Cdd:pfam05175 137 WIV 139
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
48-129 |
2.31e-06 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 46.97 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 48 KIVDLCTGNGIVPLLLSTRSKADILGVEIQERlhdmAVRSVEYNTLDD--QIQIIHDDLKnmpEKLGHNRYDVVTCNPPY 125
Cdd:PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRR----AVRSARLNALLAgvDVDVRRGDWA---RAVEFRPFDVVVSNPPY 111
|
....
gi 1238734565 126 FKTP 129
Cdd:PRK14967 112 VPAP 115
|
|
| COG2263 |
COG2263 |
Predicted RNA methylase [General function prediction only]; |
33-124 |
1.58e-05 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 441864 [Multi-domain] Cd Length: 199 Bit Score: 44.51 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 33 AVLLSKFAYVP--IQKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEynTLDDQIQIIHDDLKNMPek 110
Cdd:COG2263 31 AAELLHLAYLRgdIEGKTVLDLGCGTGMLAIGAALLGAKKVVGVDIDPEALEIARENAE--RLGVRVDFIRADVTRIP-- 106
|
90
....*....|....
gi 1238734565 111 lGHNRYDVVTCNPP 124
Cdd:COG2263 107 -LGGSVDTVVMNPP 119
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
44-133 |
2.19e-05 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 43.73 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 44 IQKGKIV-DLCTGNGIVPLLLSTRSKaDILGVEIQERLHDMAVRSVEYNTLDDQ-IQIIHDDLKnmpEKLGHNRYDVVTC 121
Cdd:PRK14968 21 DKKGDRVlEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNgVEVIRSDLF---EPFRGDKFDVILF 96
|
90
....*....|..
gi 1238734565 122 NPPYFKTPKQTE 133
Cdd:PRK14968 97 NPPYLPTEEEEE 108
|
|
| PRK01544 |
PRK01544 |
bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) ... |
44-170 |
2.39e-05 |
|
bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Pssm-ID: 234958 [Multi-domain] Cd Length: 506 Bit Score: 44.86 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 44 IQKGKIVDLCTGNGIVPL-LLSTRSKADILGVEIQERLHDMAVRSVEYNTLDDQIQIIHddlKNMPEKLGHNRYDVVTCN 122
Cdd:PRK01544 137 DKFLNILELGTGSGCIAIsLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIH---SNWFENIEKQKFDFIVSN 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1238734565 123 PPYFKTPKQTEQNmnehLRIARHEIHCTL---ED------VISVSSK-LLKQGGKAAL 170
Cdd:PRK01544 214 PPYISHSEKSEMA----IETINYEPSIALfaeEDglqayfIIAENAKqFLKPNGKIIL 267
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
39-186 |
3.89e-05 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 42.29 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 39 FAYVPIQKG-KIVDLCTGNGIVPLLLSTRSkADILGVEIQERLHDMAVRSVEYNTLddQIQIIHDDLKNMPekLGHNRYD 117
Cdd:COG2226 15 LAALGLRPGaRVLDLGCGTGRLALALAERG-ARVTGVDISPEMLELARERAAEAGL--NVEFVVGDAEDLP--FPDGSFD 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 118 VVTCNppyfktpkQTEQNMNEHLRIARhEIHctledvisvssKLLKQGGKAALV-HRPGRLLEIFELMKA 186
Cdd:COG2226 90 LVISS--------FVLHHLPDPERALA-EIA-----------RVLKPGGRLVVVdFSPPDLAELEELLAE 139
|
|
| TrmA |
COG2265 |
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure ... |
40-124 |
6.86e-05 |
|
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 441866 [Multi-domain] Cd Length: 377 Bit Score: 43.24 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 40 AYVPIQKGK-IVDLCTGNGIVPLLLSTRSKAdILGVEIQERLHDMAVRSVEYNTLDdQIQIIHDDL-KNMPEKLGHNRYD 117
Cdd:COG2265 227 EWLDLTGGErVLDLYCGVGTFALPLARRAKK-VIGVEIVPEAVEDARENARLNGLK-NVEFVAGDLeEVLPELLWGGRPD 304
|
....*..
gi 1238734565 118 VVTCNPP 124
Cdd:COG2265 305 VVVLDPP 311
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
18-166 |
1.23e-04 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 40.77 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 18 MKIIQSPTVFAFSLDAVLLSKFAyvpiQKGKIVDLCTGNGIVPLLLSTRSkADILGVEIQERLHDMAVRsveyNTLDDQI 97
Cdd:COG2227 1 MSDPDARDFWDRRLAALLARLLP----AGGRVLDVGCGTGRLALALARRG-ADVTGVDISPEALEIARE----RAAELNV 71
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1238734565 98 QIIHDDLKNMPekLGHNRYDVVTCNppyfktpkqteqNMNEHLRiarheihcTLEDVISVSSKLLKQGG 166
Cdd:COG2227 72 DFVQGDLEDLP--LEDGSFDLVICS------------EVLEHLP--------DPAALLRELARLLKPGG 118
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
44-121 |
6.50e-04 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 40.02 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 44 IQKGKIV-DLCTGNGIVPLLlSTRSKAD-ILGVEIQERLHDMAVRSVEYNTLDDQIQIIHDDLK--NMPEKLghnryDVV 119
Cdd:COG4076 33 VKPGDVVlDIGTGSGLLSML-AARAGAKkVYAVEVNPDIAAVARRIIAANGLSDRITVINADATdlDLPEKA-----DVI 106
|
..
gi 1238734565 120 TC 121
Cdd:COG4076 107 IS 108
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
45-218 |
3.04e-03 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 37.59 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 45 QKGKIVDLCTGNGIVPLLLSTRSKADILGVEIQERLHDMAVRSVEYNTLdDQIQIIHDDLkNMPEKLGHNRYDVVTCNpp 124
Cdd:COG0500 26 KGGRVLDLGCGTGRNLLALAARFGGRVIGIDLSPEAIALARARAAKAGL-GNVEFLVADL-AELDPLPAESFDLVVAF-- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1238734565 125 yfktpkqteqNMNEHLRIARheihctLEDVISVSSKLLKQGGKAALV-HRPGRLLEIFELMKAYQIEPKRVQFVYPKQGK 203
Cdd:COG0500 102 ----------GVLHHLPPEE------REALLRELARALKPGGVLLLSaSDAAAALSLARLLLLATASLLELLLLLRLLAL 165
|
170
....*....|....*
gi 1238734565 204 EANTILVEGIKGGRP 218
Cdd:COG0500 166 ELYLRALLAAAATED 180
|
|
|