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Conserved domains on  [gi|1237940347|gb|ASV65182|]
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cytochrome b, partial (mitochondrion) [Tachyoryctes audax]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-142 1.15e-105

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 305.79  E-value: 1.15e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 1.15e-105

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 305.79  E-value: 1.15e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 1.38e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 180.26  E-value: 1.38e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   9 PLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1237940347  89 MFFICLFLHIGRGTYYGSY--TLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 2.02e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.09  E-value: 2.02e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  18 FIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1237940347  98 IGRGTYYG--SYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-142 1.49e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.65  E-value: 1.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   9 PLMKIVNHtFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1237940347  89 MFFICLFLHIGRGTYYGSYT----LseTWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-142 1.15e-105

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 305.79  E-value: 1.15e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWG 142
CYTB MTH00119
cytochrome b; Provisional
 1-142 3.06e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 274.09  E-value: 3.06e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWG 143
CYTB MTH00131
cytochrome b; Provisional
 1-142 5.71e-93

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 273.45  E-value: 5.71e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWG 142
CYTB MTH00074
cytochrome b; Provisional
 1-142 5.31e-91

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 268.47  E-value: 5.31e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00074    2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00074   82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWG 143
CYTB MTH00191
cytochrome b; Provisional
 4-142 2.53e-88

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 261.39  E-value: 2.53e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWG 139
CYTB MTH00156
cytochrome b; Provisional
 11-142 2.06e-85

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 253.55  E-value: 2.06e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  11 MKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  91 FICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWG 132
CYTB MTH00034
cytochrome b; Validated
 4-142 3.36e-82

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 246.16  E-value: 3.36e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWA 142
CYTB MTH00145
cytochrome b; Provisional
 1-142 2.06e-81

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 244.04  E-value: 2.06e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   1 MTNLRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  81 YLHANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWG 143
CYTB MTH00016
cytochrome b; Validated
 4-142 5.33e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 238.04  E-value: 5.33e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00224
cytochrome b; Provisional
 4-142 2.33e-70

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 215.94  E-value: 2.33e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWG 143
CYTB MTH00022
cytochrome b; Validated
 4-142 6.60e-70

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 214.56  E-value: 6.60e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWG 141
CYTB MTH00053
cytochrome b; Provisional
 4-141 3.25e-66

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 205.33  E-value: 3.25e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   4 LRKSHPLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLH 83
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1237940347  84 ANGASMFFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*W 141
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFW 142
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-142 1.38e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 180.26  E-value: 1.38e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   9 PLMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1237940347  89 MFFICLFLHIGRGTYYGSY--TLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWG 136
CYTB MTH00033
cytochrome b; Provisional
 19-142 4.94e-54

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 173.97  E-value: 4.94e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  19 IDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHI 98
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1237940347  99 GRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWA 139
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-142 2.02e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.09  E-value: 2.02e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  18 FIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1237940347  98 IGRGTYYG--SYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWG 127
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-142 1.49e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.65  E-value: 1.49e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347   9 PLMKIVNHtFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGAS 88
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1237940347  89 MFFICLFLHIGRGTYYGSYT----LseTWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKkpreL--NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWG 153
CYTB MTH00086
cytochrome b; Provisional
 12-142 4.65e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 147.39  E-value: 4.65e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  12 KIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1237940347  92 ICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWA 131
CYTB MTH00046
cytochrome b; Validated
 10-141 4.76e-33

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 118.93  E-value: 4.76e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  10 LMKIVNHTFIDLPTPSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1237940347  90 FFICLFLHIGRGTYYGSYTLSETWNIGILLVFSTMATAFLGYVLPWGQMS*W 141
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYW 132
PRK03735 PRK03735
cytochrome b6; Provisional
 33-141 7.65e-25

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 94.39  E-value: 7.65e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  33 FGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHIGRGTYYGSYTLSE- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1237940347 112 -TWNIGILLVFSTMATAFLGYVLPWGQMS*W 141
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 24-141 1.22e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 78.22  E-value: 1.22e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1237940347  24 PSSISAWWNFGSLLGICLLLQILTGLFLAMHYSSDTSTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFLHIGRGTY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1237940347 104 YGSYTLSE--TWNIGILLVFSTMATAFLGYVLPWGQMS*W 141
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-142 3.15e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 54.94  E-value: 3.15e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1237940347  88 SMFFICLFLHIGRGTYYGSYTLSE--TWNIGILLVFSTMATAFLGYVLPWGQMS*WG 142
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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