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Conserved domains on  [gi|1236518655|ref|YP_009414321|]
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NADH dehydrogenase subunit 4 (mitochondrion) [Phaner electromontis]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475903)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 762.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMGFNY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 762.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMGFNY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-449 1.99e-83

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 265.02  E-value: 1.99e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKeswtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:COG1008    81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNnLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:COG1008   157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPL-TNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008   235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 298 IMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:COG1008   315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518655 378 ELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALmsmhMLPLACLTL 449
Cdd:COG1008   395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAV----LAPLAALIL 462
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.03e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 244.85  E-value: 1.03e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKeswtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QTeRLNAGLYFLFYTLFGSLPLLVALIYMqKSMGSLNFLMMTLWFQELSISWsNNLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGL-YFLGGGTFDLLELLNLPLPFGV-QTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAP-LTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 298 IMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1236518655 378 ELFVTMAMFSWSNVTIILIGLNILITALYSLYML 411
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-389 6.75e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 213.33  E-value: 6.75e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 NNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 272 TSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMIMARGLQT 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1236518655 351 LLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWS 389
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
 
Name Accession Description Interval E-value
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
1-459 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 762.51  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00110    1 MLKIIIPTIMLIPLTWLSKNNMIWINTTTYSLLISLISLLLLNQPNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00110   81 QHHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00110  161 LVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00110  241 YGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00110  321 LTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNM 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMGFNY 459
Cdd:MTH00110  401 LITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 620.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00124    1 MLKIILPTIMLIPTTLLSKPKFLWTNTTTYSLLIALLSLQWLKPPYYPTKNLTQWLGIDQISAPLLVLSCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00124   81 QNHLQHEPLQRKRTFLTTLILLQTFLILAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00124  161 LIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00124  241 YGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00124  321 LTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLAT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMG 456
Cdd:MTH00124  401 LITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISG 456
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
1-456 0e+00

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 573.02  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00068    1 MLKIIIPTLMLLPTTWLSPKKWLWTLTTTNSLIIAFLSLMWFNLPSETMNFTNKYFGIDQISSPLLILTCWLLPLMILAS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00068   81 QNHLKNEPINRQRTYISMLIILQLTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00068  161 LIALLILQNSLGSLSLILLELMSPMQLMTYTNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00068  241 YGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHG 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00068  321 LTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGT 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMG 456
Cdd:MTH00068  401 LITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISG 456
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
1-456 1.77e-172

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 492.16  E-value: 1.77e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFF-SDQLSSPLLVLTVWLLPLMIVA 79
Cdd:MTH00127    1 MLKILIPTLMLIPTTWLTPAKWLWTTTLAHSLLIALASLTWLKNLSETGWSSLNLYMaTDPLSTPLLVLTCWLLPLMILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  80 SQHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLP 159
Cdd:MTH00127   81 SQNHTAPEPINRQRMYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 160 LLVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00127  161 LLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 240 GYGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAH 319
Cdd:MTH00127  241 GYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 320 GLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLN 399
Cdd:MTH00127  321 GLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLG 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518655 400 ILITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMG 456
Cdd:MTH00127  401 TLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
3-454 2.37e-161

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 463.26  E-value: 2.37e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   3 KFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFS-DQLSSPLLVLTVWLLPLMIVASQ 81
Cdd:MTH00206    1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSyDPLSSPLVILSCWLLPLMFLASQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  82 HHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLL 161
Cdd:MTH00206   81 NHMKNEPINRQRIYITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 162 VALIYMQKSMGSLNFLMMTLwfqELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGY 241
Cdd:MTH00206  161 IALLFLQNSLGSLSLYILYF---SKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGY 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 242 GMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGL 321
Cdd:MTH00206  238 GMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 322 TSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNIL 401
Cdd:MTH00206  318 VSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFL 397
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1236518655 402 ITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKII 454
Cdd:MTH00206  398 FTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
1-455 1.70e-146

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 425.93  E-value: 1.70e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLL-NQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVA 79
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPISISQSSLISLLSLFLLnNHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  80 SQHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLP 159
Cdd:MTH00044   81 SINHLSNNSPNNQRTFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 160 LLVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLG 239
Cdd:MTH00044  161 LLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLG 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 240 GYGMMRITMTLA-PLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIA 318
Cdd:MTH00044  241 GYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 319 HGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGL 398
Cdd:MTH00044  321 HGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGL 400
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518655 399 NILITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIM 455
Cdd:MTH00044  401 ATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
38-457 4.10e-120

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 356.84  E-value: 4.10e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  38 SLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESWtrKKLYLSTLTSLQVILVMTFSASEMIL 117
Cdd:MTH00150    2 SLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNK--SSSFSLLVLLLCLILVLAFSVSSLLM 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 118 FYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWsnnLLWL 197
Cdd:MTH00150   80 FYFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLRKLLSSMG---LWGL 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 198 ACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICL 277
Cdd:MTH00150  157 LVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICL 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 278 RQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMST 357
Cdd:MTH00150  237 RQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSL 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 358 WWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALM 437
Cdd:MTH00150  317 WWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLL 396
                         410       420
                  ....*....|....*....|
gi 1236518655 438 SMHMLPLACLTLNPKIIMGF 457
Cdd:MTH00150  397 LLHWVPLLLLILKSDLLFMW 416
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
1-457 3.29e-115

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 345.60  E-value: 3.29e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNsmlWINTTLYSLMISLTSLSLLNQTDNISkNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00163    1 MLKFLFMLLFLIPLCFLKNS---WWLVQSLLFLLSFLFMLLFSLSFYFS-NISYFFGLDLLSFGLILLSFWICMLMILSS 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWtrKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00163   77 ESVYKKNNY--SNLFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFqelsisWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00163  155 LVGIFYLYNNSGSLSFFLLNFFG------SLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGG 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00163  229 YGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHG 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00163  309 LCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLS 388
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIMGF 457
Cdd:MTH00163  389 FFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFMLW 445
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
21-455 1.28e-106

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 323.47  E-value: 1.28e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  21 SMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESwtRKKLYLSTLT 100
Cdd:MTH00205   18 FKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNK--NSKLFTVSVI 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 101 SLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMT 180
Cdd:MTH00205   96 MLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNF 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 181 LWFQELSISWsnnLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYP 260
Cdd:MTH00205  176 PLNFSDFYLF---LYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSEL 252
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 261 FIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSR 340
Cdd:MTH00205  253 FFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSR 332
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 341 TMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSS 420
Cdd:MTH00205  333 SMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVS 412
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1236518655 421 YHTHTLNPSLTRENALMSMHMLPLACLTLNPKIIM 455
Cdd:MTH00205  413 SQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
1-454 2.42e-101

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 310.13  E-value: 2.42e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFaVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFSDQLSSPLLVLTVWLLPLMIVAS 80
Cdd:MTH00014    1 MLKLIMPLISLL-LLPLIKYPWSWALTFSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  81 QHHLNKESWTrkKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPL 160
Cdd:MTH00014   80 FKIFQNNKAP--KTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPL 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 161 LVALIYMQKSMGSLNFLMMTLWFQELSISwsnNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGG 240
Cdd:MTH00014  158 LMSILLIFYTNNSLSMLMSSMEPPSIYLM---NLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 241 YGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHG 320
Cdd:MTH00014  235 YGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHG 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 321 LTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNI 400
Cdd:MTH00014  315 LCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITS 394
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1236518655 401 LITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALMSMHMLPLACLTLNPKII 454
Cdd:MTH00014  395 FLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
59-449 1.99e-83

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 265.02  E-value: 1.99e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKeswtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:COG1008    81 DGISLPLVLLTALLTPLAILASWNEIKK----RPKLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIPMYFLIGIWGG 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNnLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:COG1008   157 E-RRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPLTAQL-LLFLAFFIAFAVKVPMFPFHTWLPD 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPL-TNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:COG1008   235 AHVEAPTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 298 IMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:COG1008   315 LLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVG 394
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518655 378 ELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSSYHTHTLNPSLTRENALmsmhMLPLACLTL 449
Cdd:COG1008   395 EFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAV----LAPLAALIL 462
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
59-411 1.03e-75

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 244.85  E-value: 1.03e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKeswtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:TIGR01972  76 DGISLLLVLLTALLTLLAILASWESIQK----RVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGG 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QTeRLNAGLYFLFYTLFGSLPLLVALIYMqKSMGSLNFLMMTLWFQELSISWsNNLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:TIGR01972 152 PN-RIYAAMKFFLYTLAGSLLMLLAILGL-YFLGGGTFDLLELLNLPLPFGV-QTWLFLAFFIAFAVKVPLFPLHTWLPD 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAP-LTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALV 297
Cdd:TIGR01972 229 AHVEAPTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 298 IMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:TIGR01972 309 LLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1236518655 378 ELFVTMAMFSWSNVTIILIGLNILITALYSLYML 411
Cdd:TIGR01972 389 EFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLY 422
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
59-410 7.61e-74

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 240.49  E-value: 7.61e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHhlnkESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGn 138
Cdd:PRK05846   81 DGISLLLVVLTALLTPLAVLASWE----EIKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG- 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QTERLNAGLYFLFYTLFGSLPLLVALIYM----QKSMGSLNFLmmTLWFQELSISWSNnLLWLACIMAFMVKMPLYSLHL 214
Cdd:PRK05846  156 GKNRIYAATKFFLYTLLGSLLMLVAIIYLvvvyYNATGTFDIA--DLLNLPLPPGVQY-WLFLAFFIAFAVKMPMFPLHT 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPL-TNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:PRK05846  233 WLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 294 MALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSI 373
Cdd:PRK05846  313 MGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTS 392
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1236518655 374 NLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYM 410
Cdd:PRK05846  393 GFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWL 429
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
52-410 5.32e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 222.23  E-value: 5.32e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  52 FSSTFFS-DQLSSPLLVLTVWLLPLMIVASQH---HLNKEswtrkklYLSTLTSLQVILVMTFSASEMILFYILFEATLI 127
Cdd:MTH00217   71 FGPVVFAvDGISIFFLILTALLTPICILISWNsikFLIKE-------FLLCLLVIEILLMGVFTILDLVGFYILFEGILI 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 128 PTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFlmMTLWFQELSISWsNNLLWLACIMAFMVKM 207
Cdd:MTH00217  144 PMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDY--QALCCLKIEKEL-QYFIFLGFFLSLAIKI 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 208 PLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIM-LCMWGMIMTSSICLRQTDLKSLI 286
Cdd:MTH00217  221 PKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRII 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 287 AYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTN 366
Cdd:MTH00217  301 AYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLAN 380
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1236518655 367 LALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYM 410
Cdd:MTH00217  381 ASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYL 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
112-389 6.75e-66

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 213.33  E-value: 6.75e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWS 191
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 NNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIM 271
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 272 TSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMIMARGLQT 350
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGSvIYRRVHTRNIRDYGGLAK 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1236518655 351 LLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWS 389
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAAS 279
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
48-422 1.49e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 218.39  E-value: 1.49e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  48 ISKNFSSTFFS-DQLSSPLLVLTVWLLPLMIVASQH---HLNKEswtrkklYLSTLTSLQVILVMTFSASEMILFYILFE 123
Cdd:MTH00204   70 LNFQWGPLVFAvDGVSLFFILLTTLLIPICILISWKsikFLFKE-------FLLCLLFLEVLLIGVFSVLDLLLFYILFE 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 124 ATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLwfQELSISwSNNLLWLACIMAF 203
Cdd:MTH00204  143 GILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLN--IKLPLS-IQKWLLVGFFLSL 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 204 MVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFI-MLCMWGMIMTSSICLRQTDL 282
Cdd:MTH00204  220 AVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDF 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 283 KSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLA 362
Cdd:MTH00204  300 KRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVL 379
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 363 SLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSSYH 422
Cdd:MTH00204  380 SLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNY 439
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
56-409 1.04e-59

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 203.61  E-value: 1.04e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  56 FFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESwtrkKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITR 135
Cdd:MTH00226   98 FAVDGISIYFIILTGFIVPCSILISWHSVKYLT----KSFLICMLILEFLLYAVFSVLDIFMFYILFEGVLIPMYLILGI 173
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 136 WGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSiSWSNNLLWLACIMAFMVKMPLYSLHLW 215
Cdd:MTH00226  174 WGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHVVS-EQTQKWIFLGIFLAMAVKIPIFPFHIW 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 216 LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPL-TNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:MTH00226  253 LPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHM 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSIN 374
Cdd:MTH00226  333 GLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGN 412
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1236518655 375 LIGELFVTMAMFSWSNVTIILIGLNILITALYSLY 409
Cdd:MTH00226  413 FIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFY 447
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
102-442 8.21e-46

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 163.92  E-value: 8.21e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 102 LQVILVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYmqksmgslNFLMMTL 181
Cdd:MTH00094   71 LILICLLFFVSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK--------NFFFFSL 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 182 WFQELSISWsnnLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMaypF 261
Cdd:MTH00094  143 CYFDFFLSW---EMFFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNF---W 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 262 IMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRT 341
Cdd:MTH00094  217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 342 MIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGKSSY 421
Cdd:MTH00094  297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFS 376
                         330       340
                  ....*....|....*....|.
gi 1236518655 422 HTHTLNPSLTRENALMSMHML 442
Cdd:MTH00094  377 NFNNFNVGLSLPLVFMMFNMF 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
59-381 3.75e-45

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 164.43  E-value: 3.75e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASqhhlnkesW--TRK-KLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITR 135
Cdd:PRK12561   58 DGLSMPLVLLSGLITTLSIFAS--------WkvTRKpRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISI 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 136 WGNQtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNnLLWLACIMAFMVKMPLYSLHLW 215
Cdd:PRK12561  130 WGGQ-KRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAELGAKSYPLALEL-LLYAGFLIAFGVKLPIFPLHTW 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 216 LPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTN-YMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHM 294
Cdd:PRK12561  208 LPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAHvYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHM 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 295 ALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSIN 374
Cdd:PRK12561  288 GFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSG 367

                  ....*..
gi 1236518655 375 LIGELFV 381
Cdd:PRK12561  368 FVSELTV 374
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
59-411 1.85e-41

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 154.09  E-value: 1.85e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQhhlnkESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK06473   78 DGLSLPLLVLNSLLTLIAIYSSD-----ESIQRPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISwSNNLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:PRK06473  153 Q-RRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHTLPLS-TQLLLLAPILVGFGIKIPLVPFHTWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFimLCMWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK06473  231 AHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMG 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 296 LVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGL---QTLLPLMSTWWLLASLTNLALPPS 372
Cdd:PRK06473  309 YILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGM 388
                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1236518655 373 INLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYML 411
Cdd:PRK06473  389 VGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLV 427
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
52-387 6.39e-40

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 148.37  E-value: 6.39e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  52 FSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESwtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLI 131
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHER--RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYG 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 132 IITRWGNQtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNnLLWLACIMAFMVKMPLYS 211
Cdd:COG0651   146 LVALGGTK-EALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLL-AAFALLLVGFGIKAALFP 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTL--APLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYS 289
Cdd:COG0651   224 LHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLfgADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYS 303
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 290 SVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLAL 369
Cdd:COG0651   304 SVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGL 383
                         330
                  ....*....|....*...
gi 1236518655 370 PPSINLIGELFVTMAMFS 387
Cdd:COG0651   384 PPLSGFVSKWLLLQAALE 401
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
58-381 2.56e-38

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 146.00  E-value: 2.56e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  58 SDQLSSPLLVLTVWLLPLMIVASqhhlnkesWT---RKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIIT 134
Cdd:PRK02546   85 ADGLSMPLILLTGFITTLAVLAA--------WPvtfKPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLA 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 135 RWGNQtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWsNNLLWLACIMAFMVKMPLYSLHL 214
Cdd:PRK02546  157 IWGGK-KRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLGF-QLLCYAGLLIAYGVKLPIVPLHT 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 215 WLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTN-YMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSH 293
Cdd:PRK02546  235 WLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHaQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISH 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 294 MALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSI 373
Cdd:PRK02546  315 MGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMS 394

                  ....*...
gi 1236518655 374 NLIGELFV 381
Cdd:PRK02546  395 GFVAELMV 402
ndhD CHL00011
NADH dehydrogenase subunit 4
110-381 3.88e-35

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 136.61  E-value: 3.88e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 110 FSASEMILFYILFEATLIPTLIIITRWGNQtERLNAGLYFLFYTLFGSLPLLVALIymqkSMGSLNFLMMTLWFQELSI- 188
Cdd:CHL00011  129 FSSRDLLLFFIMWELELIPVYLLLSMWGGK-KRLYSATKFILYTAGGSIFLLIGVL----GMGLYGSNEPTLNFETLANq 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 189 SWSNNL---LWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLC 265
Cdd:CHL00011  204 SYPVALeilFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIV 283
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 266 -MWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIhsRTMIM 344
Cdd:CHL00011  284 gAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYL 361
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1236518655 345 AR--GLQTLLPLMSTWWLLASLTNLALPPSINLIGELFV 381
Cdd:CHL00011  362 DEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIV 400
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
59-418 5.57e-34

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 133.30  E-value: 5.57e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQhhlnkESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK07363   78 DGLSLPLLVLNSLLTWIAIYSIG-----ENTERPRLYYSLILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISwSNNLLWLACIMAFMVKMPLYSLHLWLPK 218
Cdd:PRK07363  153 E-KRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLN-TQLILLTGLLLGFGIKIPLVPLHTWLPD 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 219 AHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPfiMLCMWGMIMT---SSICLRQTDLKSLIAYSSVSHMA 295
Cdd:PRK07363  231 AYTEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMG 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 296 LVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTL---LPLMSTWWLLASLTNLALPPS 372
Cdd:PRK07363  309 YILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGL 388
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1236518655 373 INLIGELFVTMAMFSWSNVTIILIGLNILITALYSLYMLTTTQRGK 418
Cdd:PRK07363  389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGR 434
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-371 3.95e-24

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 105.05  E-value: 3.95e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKESwtRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLIIITRWGN 138
Cdd:PRK12667   81 DLLGALLGLLTALVMFLILIYSYWYLEHES--GPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRD 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 139 QTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSIS----------WSNNLLWLACIMAFMVKMP 208
Cdd:PRK12667  159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSAKIRGLSFPltgglagnppLALGVALALALWAFTIKAA 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 209 LYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMT-------LAPLTNYMAYPFIMLCMWGMIMTSSICLRQTD 281
Cdd:PRK12667  239 IFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTifgispsLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 282 LKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLL 361
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLI 398
                         330
                  ....*....|
gi 1236518655 362 ASLTNLALPP 371
Cdd:PRK12667  399 GALSLVGIPP 408
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-384 2.39e-21

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 96.49  E-value: 2.39e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  55 TFFSDQLSSPLLVLT--VWLLPLMIVASQHHlnkeswTRKKLYLSTLtslqviLVMTFSASEMIL------FYILFEATL 126
Cdd:PRK08375   72 ELRADSLSALFLLVTsiLAIAALLYAIGYGE------HRQTRFYALF------LLLLAGLLGALLtadlfnLFVFLEIMS 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 127 IPTLIIITRWGNQtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTlwfqelSISWSNNLLWLA---CIMAF 203
Cdd:PRK08375  140 LSSYALVAMGGDR-RALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLA------GALAENPTVVTAfgfVLLAL 212
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 204 MVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNY----MAYPFIMLCMWGMIMTSSICLRQ 279
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRfalgLGWLLAVLALLSMLVGSLAALGQ 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 280 TDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWW 359
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAF 372
                         330       340
                  ....*....|....*....|....*
gi 1236518655 360 LLASLTNLALPPSINLIGELFVTMA 384
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVG 397
Oxidored_q5_N pfam01059
NADH-ubiquinone oxidoreductase chain 4, amino terminus;
1-109 1.82e-19

NADH-ubiquinone oxidoreductase chain 4, amino terminus;


Pssm-ID: 366442 [Multi-domain]  Cd Length: 110  Bit Score: 83.34  E-value: 1.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655   1 MLKFIIPTMTLFAVIWCSNNSMLWINTTLYSLMISLTSLSLLNQTDNISKNFSSTFFS-DQLSSPLLVLTVWLLPLMIVA 79
Cdd:pfam01059   1 MLKILLPTLMLIPLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGiDSLSYPLIILSCWLLPLMILA 80
                          90       100       110
                  ....*....|....*....|....*....|
gi 1236518655  80 SQHHLNKESWTRKKLYLSTLTSLQVILVMT 109
Cdd:pfam01059  81 SQKHLKSEPNNRQRTFIFLLILLQLFLILT 110
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
21-381 4.05e-19

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 89.21  E-value: 4.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  21 SMLWINTTLYSLMISLTSLSLLNQTDNISKN-FSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESwtRKKLYLSTL 99
Cdd:MTH00062    5 SVGFFLGFLLLLLFCLLYSSGVGCCILVVNNvFNGLFIFDSLSFYLILLVLFLGLYSQVMFYNLLSGVS--RFFLFLSLI 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 100 TSlqvilVMTFSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMm 179
Cdd:MTH00062   83 FS-----ILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSD- 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 180 tlWFQELSISWSNNLLwlaCIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAY 259
Cdd:MTH00062  157 --WGSDDSVSLIVYYV---LSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYL 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 260 PFIMLCMWGMIMTSSICLrqtDLKSLIAYSSVSHMaLVIMAILIQTPWSYMGATALM-IAHGLTSSMLFCLANSNYERIH 338
Cdd:MTH00062  232 FLCCLFSVFFLITACSEL---DGKRWLAFLSLSHI-LVPVLGLFVGDWSSINLSFFYcLGHGLSAGLVFLLLWCFYEVSG 307
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1236518655 339 SRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFV 381
Cdd:MTH00062  308 SRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFL 350
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
52-386 3.89e-18

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 87.09  E-value: 3.89e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  52 FSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESWTRKKLYLSTLTSLQVI-LVMTFSASEMILFYILFEATLIPTL 130
Cdd:PRK08667   69 LDITFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALFILsMLGVVASANTFSFLFFWEIMALSSF 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 131 IIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSiswsnnLLWLACIMAFMVKMPLY 210
Cdd:PRK08667  149 FLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS------LVFLLLFLGFGIKAGII 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 211 SLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSS 290
Cdd:PRK08667  223 PFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSS 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 291 VSHMALVIMAILIQTPWSYMGATALM-----------IAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWW 359
Cdd:PRK08667  303 IENIGIILMGIGLYVIFGVYGLDTLAllalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALF 382
                         330       340
                  ....*....|....*....|....*..
gi 1236518655 360 LLASLTNLALPPSINLIGELFVTMAMF 386
Cdd:PRK08667  383 LVGAVSIAALPPFNGFASELLLYESFF 409
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
206-387 8.74e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 82.29  E-value: 8.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 206 KMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMwGM--IMTSSICL-RQTDL 282
Cdd:PRK06458  227 KVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIF-GLlsVLVAAFFLlRQRDI 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 283 KSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLA 362
Cdd:PRK06458  306 KRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLG 385
                         170       180
                  ....*....|....*....|....*
gi 1236518655 363 SLTNLALPPSINLIGELFVTMAMFS 387
Cdd:PRK06458  386 ALAIAGMPPFGVFISEFLILTAGLA 410
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
110-327 4.97e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 74.26  E-value: 4.97e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 110 FSASEMILFYILFEATLIPTLIIITRwGNQTERLNAGLYFLFyTLFGSLPLLVALIYMQKSMGSLNFLMMTlwfQELSIS 189
Cdd:PRK08668  115 FLANDLLTLYIFWEIMTFSSFMMVPM-GKKESRKASLKYFVL-SAIGAYAMLYAIFLIYAKTGTFDFADIS---QGLIND 189
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 190 WSNNLLWLAC--IMAFMV-KMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGM---MRITMTLAPLTN-------- 255
Cdd:PRK08668  190 TSTGFALIVFlfLLAFGVaKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFllvLYVLPGTKLFSEfgtyrgvp 269
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518655 256 YMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLF 327
Cdd:PRK08668  270 LFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
102-327 5.61e-13

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 70.55  E-value: 5.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 102 LQVILVMTFSASEMILFYILFE-ATLIPTLIIITRwgNQTERLNAGLYFLFYTLFGSLPLLVALIYM------QKSMGSL 174
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAElTTVFSAMLIAIL--SARENIDAALKYIFIASTAMIFAFIGLIFLfsltrqALGTGTL 188
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 175 NFLMMTLWFQELSISWSNnLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITmTLAPLT 254
Cdd:PRK08676  189 NWTELAAHASLLSPSVLG-ASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLS-ALLRQS 266
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518655 255 NYMAYPFIMLCMWGMIMTSSIC---LRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLF 327
Cdd:PRK08676  267 GAAEQFSNVLIGLGIFSIAVAAfsmLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLF 342
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
55-379 1.16e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 69.61  E-value: 1.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  55 TFFSDQLSSPLLVL-TVWLLPLMIVA-SQHHLNKESWTRKKLYLSTLTSLQVILVMTFSASEMILFYILFEATLIPTLII 132
Cdd:PRK12665   71 TLVVDRLSALMLVVsSVVLLAVLVYAiGQGIRDGDEEQPVSIFLPTYLILVAGVSNAFLAGDLFNLYVGFEILLVASYVL 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 133 ITRwGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSiSWSNNLLWLACIMAFMVKMPLYSL 212
Cdd:PRK12665  151 LTL-GATAARVRAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVRLDELP-SGTRTALFAVLLVAFGIKAAVFPL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 213 HLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAP---LTNymaypfimLCMWGMIMTSSI----CLRQTDLKSL 285
Cdd:PRK12665  229 SFWLPDSYPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPgggLDT--------LLMVVALLTMVVgilgAIAQSDIKRL 300
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 286 IAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLt 365
Cdd:PRK12665  301 LSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPAL- 379
                         330
                  ....*....|....*
gi 1236518655 366 NLA-LPPSINLIGEL 379
Cdd:PRK12665  380 NLGgIPPFSGFIGKV 394
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
112-371 1.85e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 69.53  E-value: 1.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEA-TLIPTLIIITrwgNQTERLN--AGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLwfQELSI 188
Cdd:PRK06521  132 ADDAFSFLVAWETmSLSSWFLVIA---NHREAEIrrAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMRA--AHLSP 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 189 SWSNNLLWLAcIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYmaypfimlcMWG 268
Cdd:PRK06521  207 FWASLVFLLA-LFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFDLLGAPGW---------WWG 276
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 269 MIM-----TSSI-----CLRQTDLKSLIAYSSVSHMALVIMA-----ILIQTPWSYMGATALMIA------HGLTSSMLF 327
Cdd:PRK06521  277 VLVlalgaISAVlgvlyALAEHDLKRLLAYSTIENIGIIFVGlglamVFIAYGMPLLAALALTAAlyhllnHALFKSLLF 356
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1236518655 328 CLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK06521  357 LGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPP 400
PRK12650 PRK12650
DUF4040 family protein;
112-371 2.40e-12

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 69.30  E-value: 2.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQTErlNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLwfqelSISWS 191
Cdd:PRK12650  129 ADDVVVLFVAWELVSLASFFLIARSGSGGE--AGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILH-----SDVWA 201
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 NNLLWLACI-----MAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRitmtLAPLTNYMAYPFIMLCM 266
Cdd:PRK12650  202 EKPGLTTVVavliaVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLR----FSPVFHDVAVWNWLLII 277
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 267 WGM---IMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMI 343
Cdd:PRK12650  278 VGMitaLMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIR 357
                         250       260
                  ....*....|....*....|....*...
gi 1236518655 344 MARGLQTLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK12650  358 RLGSLWRRMPFTFVSVTIAALSMAAVPP 385
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
47-392 1.49e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 66.38  E-value: 1.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  47 NISKNFSSTFFSDQLSSPLLVLT--VWLLPLM-IVASQHHLNKESWTRKKLYLSTLTSLQVILVMTfsaSEMILFYILFE 123
Cdd:PRK06589   70 MDFGNYSIGLHLEPLGLIFLLLIgfLWICALLyTPKYLAINNIDSSSRFLFFFNLTILIGVLIALS---SDLFTMFVCYE 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 124 ATLIPTLIIITrWGNQTERLNAGLYFLFYTLFGSLPL-LVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLacima 202
Cdd:PRK06589  147 LLTISTAFLIG-HTRNNISLSGGYKYLKILMISALLLfLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYG----- 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 203 fMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAY-----PFIMLCMWGMIMTSSICL 277
Cdd:PRK06589  221 -IAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIfaefnWLIFIPIVSIFYSSLKAL 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 278 RQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMST 357
Cdd:PRK06589  300 KTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSKSFPLISF 379
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1236518655 358 WWLLASLTNLALPPSINLIGELFVTMAMFSWSNVT 392
Cdd:PRK06589  380 IISISSLSLIGIPIFSGFISKFLILLAASEQNQPW 414
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
200-387 2.30e-11

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 65.56  E-value: 2.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 200 IMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGM--IMTSSICL 277
Cdd:PRK08377  213 IFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLVIIMATLtvFFAELSAL 292
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 278 RQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMST 357
Cdd:PRK08377  293 RQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTAL 372
                         170       180       190
                  ....*....|....*....|....*....|
gi 1236518655 358 WWLLASLTNLALPPSINLIGELFVTMAMFS 387
Cdd:PRK08377  373 ALTIGALSTVGIPLFNVFWSKFRIILAGLS 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
112-377 3.19e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 65.71  E-value: 3.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMtLWFQELSISWS 191
Cdd:PRK12647  114 SDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSEL-LASGDVIREHP 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 NNLLWLACIM--AFmVKMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRitmtLAPLTNYMAYPFIMLCMWG 268
Cdd:PRK12647  193 LYLAILLLVLggAF-TKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLAR----LNPVLGGTPLWQTILPLFG 266
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 269 ---MIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMA 345
Cdd:PRK12647  267 gltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKL 346
                         250       260       270
                  ....*....|....*....|....*....|..
gi 1236518655 346 RGLQTLLPLMSTWWLLASLTNLALPPSINLIG 377
Cdd:PRK12647  347 GGLRRAMPITAAAALLAALSMAGLPPLFGFLA 378
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
51-339 6.30e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 64.20  E-value: 6.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  51 NFSSTFFSDQLSSPLLVLT--VWLLPLMIvasqhhlnkeSWTRKK--LYLSTLTSLQVILVMTFSASEMILFYILFEATL 126
Cdd:PRK07234   58 NFGVTLRADALSGYFILTNalVTLAVIFY----------CWESAKtrFFYAQLLILHGSVNAAFVCADLISLYVALEVLS 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 127 IPTLIIITrWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFlmmtlwfQELSISWSNNLLWLAciMAFMVK 206
Cdd:PRK07234  128 IATFLLVA-YPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAF-------SGLATADPEAFALIA--LGLLVK 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 207 MPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRitmtLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLI 286
Cdd:PRK07234  198 GGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVR----CALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRML 273
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1236518655 287 AYSSVSHMALVIMAILIqtpwsymgATALMIAHGLTSSMLFCLANSNYERIHS 339
Cdd:PRK07234  274 AFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRNFT 318
PRK12646 PRK12646
DUF4040 family protein;
112-370 3.84e-10

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 62.08  E-value: 3.84e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIyMQKSMGSLNFLMMTLwfqELSISWS 191
Cdd:PRK12646  129 SDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFI-MLYIMTGTNNITEIL---GQADHIK 204
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 NNLLWLACIMAFMV----KMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMTLApLTNYMAYPFIMLCM 266
Cdd:PRK12646  205 NHGLFIPMIFMFLLgaftKSAQFPFHIWLPRA-MAAPTPVSAYLhSATMVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGL 282
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 267 WGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAI-----LIQTPWSYMGATALMIA---------HGLTSSMLFCLANS 332
Cdd:PRK12646  283 ITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVgigggYAQHQQDAIASIYVFVLfaalfhlmnHAIFKCALFMGVGI 362
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1236518655 333 NYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALP 370
Cdd:PRK12646  363 IDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVP 400
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
52-323 4.64e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 61.29  E-value: 4.64e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  52 FSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKESWTRKKLYLSTLTSLQVILVMTfSASEMILFYILFEATLIPTLI 131
Cdd:COG1007    62 FGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRGLLRGEFYALLLFATLGMMLMA-SANDLLTLFLGLELLSLSLYV 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 132 IITRWGNQTERLNAGL-YFLFYTLFGSLPLL-VALIYMqkSMGSLNFLMMTLWFQELSISwsNNLLWLACIM---AFMVK 206
Cdd:COG1007   141 LVAFRRDDRRSSEAALkYFLLGALSSGFLLYgISLLYG--ATGSLNLAGIAAALAAGGAN--SPLLLLGLVLvlaGLAFK 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 207 MPLYSLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGM-MRITMT-LAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKS 284
Cdd:COG1007   217 LSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAAlLRLLVEaFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKR 295
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1236518655 285 LIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTS 323
Cdd:COG1007   296 MLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMN 334
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
59-381 7.00e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.90  E-value: 7.00e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLtVWLLPLMIVASQHHLNkeswtRKKLYLSTLTSLQVILVMTFSASEMIL-------FYILFEATLIPTLI 131
Cdd:PRK12662   75 DILSATMLVL-VNFIAVMSVLYGIYPN-----RKEISVNKIPSFYSAFLLCLGGLLGILvsndvfnIYVFLEISSISSYV 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 132 IITRwGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFMVKMPLYS 211
Cdd:PRK12662  149 LVAM-GRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 212 LHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMT-----LAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLI 286
Cdd:PRK12662  228 FHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIF 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 287 AYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTN 366
Cdd:PRK12662  308 AYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTTKLEDCLNLWKSMPKITLAFVLLSLSL 387
                         330
                  ....*....|....*
gi 1236518655 367 LALPPSINLIGELFV 381
Cdd:PRK12662  388 IGMPPTSGFVAKWYI 402
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
63-371 1.49e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 1.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  63 SPLLVLTVWLLPLMIVA-SQHHLNKESWTRKKLYLSTLTSLQVILVMTfsASEMILFYILFEATLIPTLIIITRWGNQTE 141
Cdd:PRK08376   92 GAFMALIATIVSFLAVLySISYMKHDTGLDKYYTLILLLELGMLGMAI--TGDLFNFFVFLEIMSIASYALVAFRNDTWE 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 142 RLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLAcIMAFMVKMPLYSLHLWLPKAHV 221
Cdd:PRK08376  170 AIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALF-IAGLAMKSGAVPVHMWLPDAYP 248
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 222 EAPIAGSMVLaaVLLKLGG-YGMMRITMTL-APLTNYMAYPFIM--LCMWGMIMTSSICLRQTDLKSLIAYSSVS---HM 294
Cdd:PRK08376  249 AAPSSISAML--LVIKQAGlYALARVLFSIyGPAINLATVGWVIiiLGCLTMFVGVAMAVVQKDVKRLLAYHSVSqigYM 326
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 295 AL---VIMAILIQTPWSYMGATAL------MIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLT 365
Cdd:PRK08376  327 LLglgVGLAALGDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAA 406

                  ....*.
gi 1236518655 366 NLALPP 371
Cdd:PRK08376  407 IVGLPP 412
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
156-390 1.73e-09

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 59.84  E-value: 1.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 156 GSLPLLVALIYMQKSMGSLNFLMMTLWFQELSIswsNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPIAGSMVLAAVL 235
Cdd:PRK08042  146 GTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPL---GSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVV 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 236 LKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIM-------AILIQTP-- 306
Cdd:PRK08042  223 MKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLglgagvtGIALEQPal 302
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 307 --WSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMA 384
Cdd:PRK08042  303 iaLGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQS 382

                  ....*.
gi 1236518655 385 MFSWSN 390
Cdd:PRK08042  383 FFKLSN 388
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
112-392 1.89e-09

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 59.60  E-value: 1.89e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIITRWGNQtERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSIsws 191
Cdd:PRK06525  132 SSTLLGLLLFFEITGLCSWALISYYQSP-KALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSLKY--- 207
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 192 nnLLWLACIMAFMVKMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMI 270
Cdd:PRK06525  208 --LVFLGILFAAWGKSAQLPFYSWLPDA-MEAPTPASAYLhAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLL 284
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 271 MTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYM---GATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARG 347
Cdd:PRK06525  285 YGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLaleGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRG 364
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1236518655 348 LQTLLPLMSTWWLLASLTNLALPPSINLIGELFVTMAMFSWSNVT 392
Cdd:PRK06525  365 VLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEY 409
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
106-371 2.02e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.78  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 106 LVMtfsASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQE 185
Cdd:COG1009   127 LVL---SDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPT 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 186 LSISWsnnLLWLACIMAF---MVKMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRIT--MTLAPltnyMAY 259
Cdd:COG1009   204 ILSSP---LLTLILLLLLlgaFGKSAQFPLHFWLPDA-MEGPTPVSALLhAATMVKAGVYLLARLSplFALSP----VWL 275
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 260 PFIMLC-MWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQtpwSYMGATALMIAHGLTSSMLFCLANSNYERIH 338
Cdd:COG1009   276 TVVAIIgAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATG 352
                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236518655 339 SRTMIMARGLQTLLPLMSTWWLLASLTNLALPP 371
Cdd:COG1009   353 TRDIRKMGGLRKKMPITAITFLIGALSLAGIPP 385
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
52-408 1.39e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 56.88  E-value: 1.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  52 FSSTFFSDQLSSPLLVLTVWLLPLMIVASQHHLNKEswtRKKLYLSTLTSLQVILVM-TFSASEMILFYILFEATLIPTL 130
Cdd:PRK07691   69 FGIVFVADMFAALLVLTSSIITFLVILYSFQTIGIE---RERYYYYPSVLFMLAGVNgAFLTGDIFNLFVFFEVMLMASY 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 131 IIITRWGNQTErLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSN--NLLWLACIMAFMVKMP 208
Cdd:PRK07691  146 VLIVIGGTKIQ-LRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADISVKIAELSAGQTGliTVVAILFLFVFATKAG 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 209 LYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRI-TMTLAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIA 287
Cdd:PRK07691  225 LFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTfTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIII 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 288 YSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNL 367
Cdd:PRK07691  305 YNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGWMFFIAALSLA 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1236518655 368 ALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSL 408
Cdd:PRK07691  385 GIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSV 425
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
112-327 6.91e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 54.93  E-value: 6.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 112 ASEMILFYILFEATLIPTLIIItrwGNQTERLN---AGLYFLFYTLFGSLPLLVALIYMQKSMGSlnFLMMTLwfqeLSI 188
Cdd:PRK12644  125 SDNLLLLYVFWELTTVLSFLLI---GHYAERAAsrrAALQALLVTTAGGLAMLVGIIILGQAAGT--YRLSEL----LAD 195
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 189 SWSNNLLWLA--CIMAFMV-KMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGYGMMRITMTLAPLTNYMaYPFIML 264
Cdd:PRK12644  196 PPTGPAVSVAvvLILVGALsKSAIVPFHFWLPGA-MAAPTPVSAYLhAAAMVKAGIYLVARLAPGFADVPVWR-PTVLVL 273
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518655 265 CMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLF 327
Cdd:PRK12644  274 GLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALF 336
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
95-370 1.92e-07

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 53.54  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  95 YLSTLTSLQVILVmtfSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSL 174
Cdd:MTH00020  116 YLSLFTFLMVVLV---TSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSL 192
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 175 NFLMMtlwFQELSISWSNNLLWLaCIMAF---MVKMPLYSLHLWLPKAH-----VEAPI-AGSMVLAAVLLklggygmmr 245
Cdd:MTH00020  193 DFSSV---FNMVVSAPSSDITLI-CLFLFigaVGKSAQLGLHTWLPDAMegptpVSALIhAATMVTAGVFL--------- 259
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 246 iTMTLAPLTNYMAYPFIMLCMWGMI---MTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQtpwSYMGATALMIAHGLT 322
Cdd:MTH00020  260 -LIRSSPLFEQAPLALIIVTIVGSLtvfFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLS---HYSISLFHLMNHAFF 335
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518655 323 SSMLFCLANSnyeRIHS----RTMIMARGLQTLLPLMSTWWLLASLTNLALP 370
Cdd:MTH00020  336 KALLFLSAGS---VIHAlsdeQDMRKMGGLISFLPLTYIFFLIGSLSLMGFP 384
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
119-408 4.06e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 52.26  E-value: 4.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 119 YILFEATLIPTLIIITrWGNQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSISWSNNLLWLA 198
Cdd:PRK12663  134 YVWFEVMLIASFVLIT-LGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALL 212
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 199 CIMAFMVKMPLYSLHlWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITMTLAPLTNYMAYPFIMLCMWGMIMTSSI-CL 277
Cdd:PRK12663  213 FLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgAL 291
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 278 RQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMST 357
Cdd:PRK12663  292 AYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGA 371
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236518655 358 WWLLASLTNLALPPSINLIGELFVTMAMFSWSNVTIILIGLNILITALYSL 408
Cdd:PRK12663  372 LFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSL 422
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
59-370 2.08e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 50.34  E-value: 2.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  59 DQLSSPLLVLTVWLLPLMIVASQHHLNKESW-TRKKLYLSTLTSLQVILVmtfSASEMILFYILFEATLIPTLIIITRWG 137
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHvPRFLCYLSLFTFLMMVLV---TSDNYLQLFIGWEGVGVCSYLLVAFWT 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 138 NQTERLNAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSI---SWSNNLLWLACIMAFMV--------- 205
Cdd:MTH00032  156 TRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNGGSVGSGImdrGYYGGGAYESPLAPFAIigillligc 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 206 --KMPLYSLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITmtlaPLTNYMAYPFIMLCMWGMI---MTSSICLRQT 280
Cdd:MTH00032  236 igKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSF----PLFEKAPLTLLIITIFGALtafFAATVGLVQN 311
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 281 DLKSLIAYSSVSHMALVIMAILIQTpwSYMGATALMIAHGLTSSMLFCLANSnyeRIHSRT-----MIMARGLQTLLPLM 355
Cdd:MTH00032  312 DLKKVIAYSTCSQLGYMVLIIGIEG--SHNVGLFHLVNHAFFKALLFLSAGS---VIHSTTvdeqdMRKMGGLIHSIPFT 386
                         330
                  ....*....|....*
gi 1236518655 356 STWWLLASLTNLALP 370
Cdd:MTH00032  387 YTMMLIGSFSIMGLP 401
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
172-371 3.48e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 46.17  E-value: 3.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 172 GSLNFLMMTLWFQELsISWSNNLLWLACIMAFMV------KMPLYSLHLWLPKAhVEAPI-------AGSMVLAAVLLkl 238
Cdd:PRK07376  201 GSFDFDGIADRLSEL-VSSGAVSGWLALLLCILVflgpmaKSAQFPLHVWLPDA-MEGPTpisalihAATMVAAGVFL-- 276
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 239 ggygmmriTMTLAPLtnYMAYPFIMLCM-WGMIMTS----SICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSymGAT 313
Cdd:PRK07376  277 --------VARMYPV--FEQFPAVMTVIaWTGAITAflgaSIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSA--GLF 344
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518655 314 ALMiAHGLTSSMLFCLANS---------NYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK07376  345 HLM-THAYFKAMLFLGSGSvihgmeevvGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPP 410
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
86-371 2.63e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 43.66  E-value: 2.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  86 KESWTRKKLYLstLTSLQVILVMTFSASEMILFyILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLLVALI 165
Cdd:PRK12649  107 KEDLPRYYQYL--LLFMGSMIGMVFSGNTIQLF-IFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGLFMFAGFL 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 166 YMQKSMGSLNFLMMTLWFQELSISWSNNLLWLACIMAFM---VKMPLYSLHLWLPKAhVEAPIAGSMVL-AAVLLKLGGY 241
Cdd:PRK12649  184 LLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIgaaAKSAQGPFYIWLPNA-MEAPTPVSAFLhSATMVKAGVY 262
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 242 GMMRItmtlAPLTNYMAYPFIMLC---MWGMIMTSSICLRQTDLKSLIAYSSVSHMALvIMAILIQTPWSYMG-----AT 313
Cdd:PRK12649  263 LVARI----HPIFSGTEAWFILVSgtgMITMVLAGFLAFRQTDIKAILAYSTISQLAY-LMTMYGYTTYHEPGlgvaaAT 337
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518655 314 ALMIAHGLTSSMLFCLANSNYERIHSRTMIMARGLQTLLPLMSTWWLLASLTNLALPP 371
Cdd:PRK12649  338 FHLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
111-327 2.73e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 43.10  E-value: 2.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 111 SASEMILFYILFEATLIPTLIIITRWGNQTERLNAGL-YFLFYTLFGSLPLL-VALIYMQKSMGSLNFLMMTLWFQELSI 188
Cdd:MTH00196   11 SSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLkYFVLGALSSGLFLFgCALLCGTTGGLHLSYINLVLNSGQSFS 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 189 SWSNNLLWLACIMAFMVKMPLYSLHLWLPKAHVEAPiagsMVLAAVLLKLGGYGMMRITMTLAPLTNYmaypFIMLCMWG 268
Cdd:MTH00196   91 SVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAP----TKTTALLAIVPKLGIFSILVSIGLNVNI----LLIGGLFS 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518655 269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLF 327
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVF 221
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
94-323 2.77e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 43.27  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  94 LYLSTLTSLQVILVMTfSASEMILFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLFGSLPLL--VALIYMqkSM 171
Cdd:PRK05777  105 FYLLVLFALLGMMVMV-SANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygMSLLYG--AT 181
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 172 GSLNFLMMtlwFQELSISWSNNLLWLACIMAFMV----KMPLYSLHLWLPKAHVEAPIAGSMVLAAVLlKLGGYGM-MRI 246
Cdd:PRK05777  182 GSLSFAGI---AKALADGSGNSLLLLFGLVFLLVglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAP-KIAAFAVlLRL 257
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518655 247 TMT-LAPLTNYMAYPFIMLCMWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTS 323
Cdd:PRK05777  258 LVVaFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
31-364 6.80e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.08  E-value: 6.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655  31 SLMISLTSLSLLNQTDNISKNFSSTFFSdqlsspLLVLTVWLLplmivASQHHLnkeSWTRKKLYLSTLTSLQVI-LVMT 109
Cdd:PRK06459   23 SYILTMISSIILLITSIYEYNGVLSFFS------IISTIVWIL-----ASLYSI---EYDHYGKWLSSLYILTILgMAIV 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 110 FSASEMILFYILFEATLIPTLIIITRWGNQTErlnAGLYFLFYTLFGSLPLLVALIYMQKSMGSLNFLMMTLWFQELSIS 189
Cdd:PRK06459   89 LTSDNYLLFLAGWEIMTIPSYVAIALTKKNKR---PAFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLPSPVPLILAS 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 190 wsnnllwlaciMAFMVKMPLYSLHL--WLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITM-TLAPLTNYMAYPFIMLCM 266
Cdd:PRK06459  166 -----------FGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTIlTQTIPIGYFGLTILAIGA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 267 WGMIMTSSICLRQTDLKSLIAYSSVSHMALVIMAI--------LIQTPWSYMGATALM--IAHGLTSSMLFC-------- 328
Cdd:PRK06459  235 FSILFGALYAYVSENVKGLLAFSTIENNGAILVALglymvtkqLITSIEHFSLITVILysFAHSVAKTGLFLssglqekq 314
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 1236518655 329 ----LANSNYERIHSRTMIMARGLQTLLPL---MSTWWLLASL 364
Cdd:PRK06459  315 sitySKKIRNRWIELGLTLLASSLSGLLPNiggVASWLLLESL 357
PRK12666 PRK12666
putative monovalent cation/H+ antiporter subunit D; Reviewed
137-330 1.92e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237166 [Multi-domain]  Cd Length: 528  Bit Score: 40.60  E-value: 1.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 137 GNQTERLNAGLYFLFYTLFGSLPLL--VALIYmqKSMGSLNFLMMTLWFQELSISwSNNLLWLACIM---AFMVKMPLYS 211
Cdd:PRK12666  152 GSGRARVRAGLHYVAINLVASSLFLigVGLIY--GVTGTLNMADLAQRIAQLPAA-DRALLEAGAALllvVFLIKAAMWP 228
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518655 212 LHLWLPKAHVEA--PIAGsmvLAAVLLKLGGYGMMRITMTL-APLTNYMAYPFIMLCMWGMIMTSSI----CLRQTDLKS 284
Cdd:PRK12666  229 LNFWLPPAYAAAsaPVAA---LFAIMTKVGIYAILRLSTLLfGPEAGASAGFGQDWLLPGGLATLAFgaigVLAAQRLRR 305
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1236518655 285 LIAYSSVSHMALVIMAILIQTPWSYMGATALMIAHGLTSSMLFCLA 330
Cdd:PRK12666  306 LAAYLVLVSSGTLLAAIGLGNPAATAAALYYLVHSTLAAAALFLLA 351
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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