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Conserved domains on  [gi|1236518600|ref|YP_009414270|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Microcebus margotmarshae]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475900)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
1-602 0e+00

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 1121.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   1 MNLFTSFMLITLIVLSLPLMINTLNINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00108   81 KLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGP 240
Cdd:MTH00108  161 RTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN 320
Cdd:MTH00108  241 TPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGIN 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 321 QPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAN 400
Cdd:MTH00108  321 QPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAAN 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 401 TSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQM 480
Cdd:MTH00108  401 TSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQM 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 481 TMPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEK 560
Cdd:MTH00108  481 TMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEK 560
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1236518600 561 TMPKIMSKTQMMLSTTISNQKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00108  561 ILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLSLLLF 602
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
1-602 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 1121.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   1 MNLFTSFMLITLIVLSLPLMINTLNINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00108   81 KLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGP 240
Cdd:MTH00108  161 RTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN 320
Cdd:MTH00108  241 TPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGIN 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 321 QPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAN 400
Cdd:MTH00108  321 QPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAAN 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 401 TSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQM 480
Cdd:MTH00108  401 TSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQM 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 481 TMPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEK 560
Cdd:MTH00108  481 TMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEK 560
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1236518600 561 TMPKIMSKTQMMLSTTISNQKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00108  561 ILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLSLLLF 602
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
41-501 3.33e-145

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 433.42  E-value: 3.33e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  41 ACAFITSTIPTTLFIFS--------GQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADP 112
Cdd:COG1009    29 AAGWLAALAPLAAFVLSlllfpavlGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDP 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 113 DINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMY 192
Cdd:COG1009   109 GLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAI 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 193 SNTWEFQQLF-----MLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM 267
Cdd:COG1009   189 AGTLNFSELLaaaptILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLF 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 268 ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSII 347
Cdd:COG1009   269 ALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVI 348
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 348 HNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATS-LTAVYSTRI 426
Cdd:COG1009   349 HATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLGAfLTAFYSFRL 427
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 427 IFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNI--------LPTNIPQMTMPKYLKLMAMMVTLLGF 498
Cdd:COG1009   428 FFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaaVLGGELHLAHGLLLNALPLLLSLLGI 507

                  ...
gi 1236518600 499 MLA 501
Cdd:COG1009   508 ALG 510
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
38-501 9.68e-134

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 403.97  E-value: 9.68e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  38 LSIACAFITSTIPTTLFIFSGQEAIISN--WHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDIN 115
Cdd:TIGR01974  35 GSVGLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYS 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 116 QFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNT 195
Cdd:TIGR01974 115 RFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGT 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 196 WEFQQLFMLDNNL--SMLPLIG--LLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNN 271
Cdd:TIGR01974 195 LNFQEVFALAPGAffSALTLICllLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSP 274
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 272 SIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLN 351
Cdd:TIGR01974 275 TALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMH 354
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 352 DEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYAL 431
Cdd:TIGR01974 355 HEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVF 434
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 432 LGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFL----------FFNILPTNIPQMTMPKYLKLMAMMVTLLGFMLA 501
Cdd:TIGR01974 435 HGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIvplfeflkgvLPTSAEPALEHHHVPALEIWSPTAVAILGILLA 514
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
134-399 3.61e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.98  E-value: 3.61e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 134 ANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQL-----FMLDNNL 208
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 209 SMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLhSSTMVVAGIFLLIRFHPLMEN-NNSIQTLMLCLGAITTL 286
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPsSPFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 287 FTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1236518600 364 KAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAA 399
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
1-602 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 1121.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   1 MNLFTSFMLITLIVLSLPLMINTLNINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00108   81 KLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGP 240
Cdd:MTH00108  161 RTDANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN 320
Cdd:MTH00108  241 TPVSALLHSSTMVVAGVFLLIRFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGIN 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 321 QPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAN 400
Cdd:MTH00108  321 QPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAAN 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 401 TSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQM 480
Cdd:MTH00108  401 TSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQM 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 481 TMPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEK 560
Cdd:MTH00108  481 TMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSNTFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEK 560
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|..
gi 1236518600 561 TMPKIMSKTQMMLSTTISNQKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00108  561 ILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLSLLLF 602
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
3-603 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 940.41  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   3 LFTSFMLITLIVLSLPLM--INTLNINKNMPFTlYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00137    6 IMTSSLILIFALLIYPLLttLSPNPQKPNWALT-HVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDINISF 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00137   85 KFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYG 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSM-LPLIGLLIAATGKSAQFGLHPWLPSAMEG 239
Cdd:MTH00137  165 RADANTAALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIFALSKDFDLtLPLLGLILAATGKSAQFGLHPWLPSAMEG 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 240 PTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGI 319
Cdd:MTH00137  245 PTPVSALLHSSTMVVAGIFLLIRLSPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGL 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 320 NQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAA 399
Cdd:MTH00137  325 NQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEAL 404
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 400 NTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQ 479
Cdd:MTH00137  405 NTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNPLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPLKTPV 484
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 480 MTMPKYLKLMAMMVTLLGFMLAMELNIMTNN-LKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWL 558
Cdd:MTH00137  485 MTMPPLLKLAALIVTILGLLIALELASLTNKqFKPTPTLPPHHFSNMLGFFPAIIHRLTPKLNLTLGQTIATQMVDQTWL 564
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*.
gi 1236518600 559 EKTMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLLIS 603
Cdd:MTH00137  565 EKTGPKGIASLQLPLITTTSNiQQGMIKTYLTLFLLTLALATLLLL 610
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
3-602 0e+00

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 871.79  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   3 LFTSFMLITLIVLSLPLMINTLNINkNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSFKL 82
Cdd:MTH00004    4 LLNTTTLLTLLILLTPILLPLLSKN-LKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFKL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  83 DYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRT 162
Cdd:MTH00004   83 DQYSLMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 163 DANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLdNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTP 242
Cdd:MTH00004  163 EANTAALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSP-TQTPTLPLLGLILAATGKSAQFGLHPWLPAAMEGPTP 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 243 VSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQP 322
Cdd:MTH00004  242 VSALLHSSTMVVAGIFLLIRTHPLLQNNQTALTICLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQP 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 323 YLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTS 402
Cdd:MTH00004  322 QLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTS 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 403 NINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQMTM 482
Cdd:MTH00004  402 YLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTKTPPMTM 481
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 483 PKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEKTM 562
Cdd:MTH00004  482 PTTTKLAALIVTILGILLALELSNMTTTLTPPKQNTLHNFSNQLAFFNPLTHRLLPMTLLKSSQKIATHLIDLSWLEKMG 561
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|.
gi 1236518600 563 PKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00004  562 PKGLANLQLTASKTLTTlQKGLIKNYLTSFALTILLLLLLT 602
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
1-602 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 843.03  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   1 MNLFTSFMLITLIVLSLPLMINTlninkNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00066    4 MLIFNSSMILSLLLLILPLLLPK-----SNNFHTNVKTSVKTAFFISLIPLMIFINQGLESITTSFHWMNIFNFNINSSF 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00066   79 KFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNlSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGP 240
Cdd:MTH00066  159 RADANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLNDN-STLPLLGLILAAAGKSAQFGLHPWLPAAMEGP 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN 320
Cdd:MTH00066  238 TPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTICLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 321 QPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAN 400
Cdd:MTH00066  318 QPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMN 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 401 TSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQM 480
Cdd:MTH00066  398 TSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIL 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 481 TMPKYLKLMAMMVTLLGFMLAMELNIMTNnlKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEK 560
Cdd:MTH00066  478 TMPTFMKLAALLVTLLGLLIALDLAKITS--KTTPKTKMHSFSNLLAFFPTIIHRLSPKTNLNSGQNIATHLTDMTWYEK 555
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 1236518600 561 TMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00066  556 SGPKGLTNQQLPPIKTITNiQTGLIKTYLTLFLITLLLMLILL 598
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
1-602 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 665.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   1 MNLFTSFMLITLIVLSLPLmintlnINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSF 80
Cdd:MTH00211    2 NTIFNSGFLLILILLLLPL------LLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSF 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  81 KLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYG 160
Cdd:MTH00211   76 KFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYG 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 161 RTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNlSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGP 240
Cdd:MTH00211  156 RSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQLFILNLD-LTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGP 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN 320
Cdd:MTH00211  235 TPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLN 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 321 QPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAN 400
Cdd:MTH00211  315 QPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMN 394
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 401 TSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNIPQM 480
Cdd:MTH00211  395 GSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIL 474
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 481 TMPKYLKLMAMMVTLLGFMLAMELnimTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEK 560
Cdd:MTH00211  475 SLPFLLKLMPLLVTIVGLLLGLEL---VNLTHKQLKTSTLSFSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLMDLGWYEK 551
                         570       580       590       600
                  ....*....|....*....|....*....|....*....|...
gi 1236518600 561 TMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00211  552 LGPKGLGVNQKKLIKLVTSpQQGLIKSYLALLLLSLLLILLLF 594
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
26-602 0e+00

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 543.80  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  26 INKNMPFTLYVKLSIAcafITSTIPTTLFI-FSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFS 104
Cdd:MTH00208   51 NYNNSNFSISLLKTLA---FLSLINLLIWIlLGCPNINISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFS 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 105 MWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFIL 184
Cdd:MTH00208  128 HYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIIL 207
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 185 TMAWFLMYSNTWEFQQLFMLDNN---LSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLI 261
Cdd:MTH00208  208 FLSLSLINFNSWNLNEILSLNNSnsfLINILLFGILLAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLI 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 262 RFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFM 341
Cdd:MTH00208  288 RTSPLISNSPWFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFL 367
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 342 CSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAV 421
Cdd:MTH00208  368 CSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAV 447
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 422 YSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILptNIPQMTMPKYLKLMAMMVTLLGfmLA 501
Cdd:MTH00208  448 YSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVF--NLPPLTLPLILKSLPLIVTIIG--AA 523
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 502 MELNIMTNNLKLNMSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSLLDLIWLEKTMPKIMSKTQMMLSTTISN-Q 580
Cdd:MTH00208  524 FSFSFLLSLSSNPINSNFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLtQ 603
                         570       580
                  ....*....|....*....|..
gi 1236518600 581 KGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00208  604 TGYIKQYLLSSTLLFLLILTLS 625
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
41-501 3.33e-145

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 433.42  E-value: 3.33e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  41 ACAFITSTIPTTLFIFS--------GQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADP 112
Cdd:COG1009    29 AAGWLAALAPLAAFVLSlllfpavlGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDP 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 113 DINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMY 192
Cdd:COG1009   109 GLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAI 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 193 SNTWEFQQLF-----MLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM 267
Cdd:COG1009   189 AGTLNFSELLaaaptILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLF 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 268 ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSII 347
Cdd:COG1009   269 ALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVI 348
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 348 HNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATS-LTAVYSTRI 426
Cdd:COG1009   349 HATG-TRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLGAfLTAFYSFRL 427
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 427 IFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNI--------LPTNIPQMTMPKYLKLMAMMVTLLGF 498
Cdd:COG1009   428 FFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLLegllapaaVLGGELHLAHGLLLNALPLLLSLLGI 507

                  ...
gi 1236518600 499 MLA 501
Cdd:COG1009   508 ALG 510
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
38-501 8.98e-140

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 419.95  E-value: 8.98e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  38 LSIACAFITSTIPTTLFIFSGQEAI-ISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQ 116
Cdd:PRK06590   37 GLVGLSALLSLVVFFDFLLGGGRAFsQTLWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRR 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 117 FFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMawFLMYSN-- 194
Cdd:PRK06590  117 FFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAFIVNRVGDVGLALGI--FLLFAEfg 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 195 TWEFQQLF-----MLDNNLSMLPLIG--LLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM 267
Cdd:PRK06590  195 SLNYDEVFaaapqFFGLGWSALTLICllLFIGAMGKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMSPLF 274
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 268 ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSII 347
Cdd:PRK06590  275 ELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVI 354
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 348 HNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAnTSNINAWALTITLIATSLTAVYSTRII 427
Cdd:PRK06590  355 HAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFLTAFYSFRLI 433
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 428 FYALLGQPRF---------ISMSIinennPLLInpikrLMIGSIFAGFFL---FFNILPT------NIPQMTMPKYLKLM 489
Cdd:PRK06590  434 FLVFHGKEKEkihhphespAVMTL-----PLIV-----LAVLSVFAGALIvppFLGVLPLttelahGEAEHHLPVWVALL 503
                         490
                  ....*....|..
gi 1236518600 490 AMMVTLLGFMLA 501
Cdd:PRK06590  504 PLVVALAGIALA 515
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
38-501 9.68e-134

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 403.97  E-value: 9.68e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  38 LSIACAFITSTIPTTLFIFSGQEAIISN--WHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDIN 115
Cdd:TIGR01974  35 GSVGLSAALSAFVFVDFFLNGEGEAFTQslFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYS 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 116 QFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNT 195
Cdd:TIGR01974 115 RFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGT 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 196 WEFQQLFMLDNNL--SMLPLIG--LLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNN 271
Cdd:TIGR01974 195 LNFQEVFALAPGAffSALTLICllLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSPLFELSP 274
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 272 SIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLN 351
Cdd:TIGR01974 275 TALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMH 354
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 352 DEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYAL 431
Cdd:TIGR01974 355 HEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVF 434
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 432 LGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFL----------FFNILPTNIPQMTMPKYLKLMAMMVTLLGFMLA 501
Cdd:TIGR01974 435 HGKERHEADAHPHESPLVMLLPLIVLAVGSVFAGFFIvplfeflkgvLPTSAEPALEHHHVPALEIWSPTAVAILGILLA 514
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
38-504 7.29e-114

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 352.46  E-value: 7.29e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  38 LSIACAFITSTIPTTLF---IFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDI 114
Cdd:MTH00020   31 LTSSCLIISLSWSFLIFyeiLFNSSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHI 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 115 NQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSN 194
Cdd:MTH00020  111 PRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFG 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 195 TWEFQQLF----MLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENN 270
Cdd:MTH00020  191 SLDFSSVFnmvvSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQA 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 271 NSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNL 350
Cdd:MTH00020  271 PLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHAL 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 351 NDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYA 430
Cdd:MTH00020  351 SDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLT 430
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518600 431 LLGQP--RFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNI--LPTNIPQMtMPKYLKLMAMMVTLLGFMLAMEL 504
Cdd:MTH00020  431 FLSNTnlKKAVFFHLHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPI-VPLSIKLLPVFLSLGGIGLVIIL 507
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
49-603 4.29e-112

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 346.44  E-value: 4.29e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  49 IPTTLFIFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITM 128
Cdd:MTH00151   19 FPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSM 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 129 LILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSntwEFQQLFMLDNNL 208
Cdd:MTH00151   99 NLLIFIPSLPSLLLGWDGLGIVSFALV-IYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLG---HWSILSMWDFKL 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 209 SMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFT 288
Cdd:MTH00151  175 SGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSFLLFISLLTLLMA 254
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 289 AICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPF 368
Cdd:MTH00151  255 GISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPL 334
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 369 TSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNP 448
Cdd:MTH00151  335 TSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDF 414
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 449 LLINPIKRLMIGSIFAGFFlFFNILPTNIPQMTMPKYLKLMAMMVTLLGFMLAMeLNIMTNNLKLNMSSNTFKFSNMlGF 528
Cdd:MTH00151  415 YVSLPMLLLSLGALIGGKL-LQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLSF-GFWDSGFSSSKMVKLSFFFSSM-WF 491
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518600 529 FPTIMHRPIPLLNLYISQNTASSlLDLIWLEKTMPKIMSKTQMMLSttISNQKGLIKL--YFMSFIASALMMLLLIS 603
Cdd:MTH00151  492 LSPLSSQPLKSLSLKLSNSSMKS-LDMGWLEILGGQGVFKANKSFS--VLNESWPVKWfnFFIGLILLLVLFLVVIS 565
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
38-501 1.39e-111

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 347.00  E-value: 1.39e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  38 LSIACAFITSTIPTTLF---IFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDI 114
Cdd:MTH00210   31 LTSSCIVISAIVSCCIFyetTLNGSATYIKLWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHI 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 115 NQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSN 194
Cdd:MTH00210  111 PRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGLVLAMIMILKEFG 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 195 TWEFQQLFML---DNNLSMLPLIGLL--IAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMEN 269
Cdd:MTH00210  191 TLEFSTISSLlvtNINKESLTIICLLlfIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEG 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 270 NNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHN 349
Cdd:MTH00210  271 SPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHA 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 350 LNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFY 429
Cdd:MTH00210  351 VSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYL 430
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236518600 430 ALLGQPRFISMSIIN--ENNPLLINPIKRLMIGSIFAGfFLFFNILPTNIPQMTMPKYLKLMAMMVTLLGFMLA 501
Cdd:MTH00210  431 TFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVG-YLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLA 503
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
53-602 2.03e-110

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 342.51  E-value: 2.03e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  53 LFIFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILV 132
Cdd:MTH00165   23 LYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLI 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 133 TANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYsNTWEF--QQLFMLDNNLSM 210
Cdd:MTH00165  103 ISPNLISILLGWDGLGLVSYCLV-IYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNF-GSWNFifYLDFMKNSFEML 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 211 LPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLcLGAITTLFTAI 290
Cdd:MTH00165  181 LIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFFSKFLLL-ISLLTMFMAGL 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 291 CALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTS 370
Cdd:MTH00165  260 GANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTS 339
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 371 SSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLL 450
Cdd:MTH00165  340 SCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFM 419
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 451 INPIKRLMIGSIFAGFFLFFNILPTNIpQMTMPKYLKLMAMMVTLLGFMLAMELNIMtNNLKLNMSSNTFKFSNMLG--- 527
Cdd:MTH00165  420 LKSMILLLFMSIFGGSMLSWLIFPEPY-MICLPFYLKLLTLFVILLGGWLGYELSLM-SLSYNLKSLKNYKLSSFLGsmw 497
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 528 FFPTIMHRPIPLLNLYISQNTaSSLLDLIWLEKTMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLLI 602
Cdd:MTH00165  498 FMPFLSTYGISYYPLNLGSLS-LKSFDQGWSEYFGGQGLYNFLKKLSKLIQWlQNNNLKIYLLSFLLWMIILLLLF 572
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
30-603 3.94e-95

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 302.84  E-value: 3.94e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  30 MPFTLYVKLSIACAFITstIPTTLFIFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMH 109
Cdd:MTH00207    5 KPSSIASYLLWFMSILM--FPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQ 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 110 ADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWF 189
Cdd:MTH00207   83 EDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILV-IYYQNPKSLGAGMITALTNRIGDVMLLLSIGWT 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 190 LmysNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMEN 269
Cdd:MTH00207  162 L---NQGHWSITNMWQTDMNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSS 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 270 NNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHN 349
Cdd:MTH00207  239 TYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHS 318
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 350 LNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFY 429
Cdd:MTH00207  319 HHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLA 398
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 430 ALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFnILPTNIPQMTMPKYLKLMAMMVTLLGFMLAMEL---NI 506
Cdd:MTH00207  399 VLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNW-WLPTPQEEPILPLQYKLLPLLVVTLGALLAWLFttpNI 477
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 507 MTNNLKLNMSSNTFKFSNMLGFFPT----IMHRPIPLLNLYIsqntasSLLDLIWLEKTMPKIMSKtqmMLSTTISNQKG 582
Cdd:MTH00207  478 TKTPLLINNPLSHFASCLMWFLVPLssqfIMSTPMNLSHNYL------KLLDQGWLEMLGAQGTFK---MFSRSSNNVMK 548
                         570       580
                  ....*....|....*....|.
gi 1236518600 583 LIKLYFMSFIASALMMLLLIS 603
Cdd:MTH00207  549 LQKNIPNNYLMMSFVLLTIII 569
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
53-601 2.22e-93

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 298.10  E-value: 2.22e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  53 LFIFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILV 132
Cdd:MTH00209   21 VIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLI 100
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 133 TANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLP 212
Cdd:MTH00209  101 FVPNLITLLLGWDGLGLVSYLLV-IYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHGNWNIFYLNFNSNLGSVISV 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 213 LIglLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICA 292
Cdd:MTH00209  180 LI--VLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSPFFSMSLLLLGSLTTLMASMSA 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 293 LTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSS 372
Cdd:MTH00209  258 NVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSIC 337
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 373 LIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLIN 452
Cdd:MTH00209  338 LNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLK 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 453 PIKRLMIGSIFAGFFLFFNILPTNIPqMTMPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFkFSNMLgFFPTI 532
Cdd:MTH00209  418 PMLVLTLGSITGGSVMSWVMVPSVNS-VVLPWFLKLLPIMLILFGVLLMYMVLKKNFFLIKGYKVNYF-LSQMW-FLPDL 494
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 533 MHRPIPLLNLYISQNTaSSLLDLIWLEKTMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLL 601
Cdd:MTH00209  495 SSQPVNKFTMKLSKTM-LKLLDQGWVEKMSGQGSFKVLKKSSKLSQIiQNNSLKLFVTFMMLILLGVILF 563
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
39-436 3.54e-90

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 292.70  E-value: 3.54e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  39 SIACAFITSTIPTTLFI--------FSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHA 110
Cdd:PRK07376   38 QPVAVLLISLVGAAAVLsyallwsqIQGHEPYERLFEWASAGDFHLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAH 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 111 DPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFL 190
Cdd:PRK07376  118 DPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADAAQKAFVVNRVGDFGLLLGILGLF 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 191 MYSNTWEFQQLF----------MLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLL 260
Cdd:PRK07376  198 WATGSFDFDGIAdrlselvssgAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFLV 277
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 261 IRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLF 340
Cdd:PRK07376  278 ARMYPVFEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLF 357
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 341 MCSGSIIHNLND--------EQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWAltIT 412
Cdd:PRK07376  358 LGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPALWF--VG 435
                         410       420
                  ....*....|....*....|....
gi 1236518600 413 LIATSLTAVYSTRIIFYALLGQPR 436
Cdd:PRK07376  436 FLTAGMTAFYMFRMYFLTFEGEFR 459
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
63-601 1.35e-88

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 288.40  E-value: 1.35e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  63 ISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFI 142
Cdd:MTH00032   59 IELYKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFI 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 143 GWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLF-------MLDNN-------- 207
Cdd:MTH00032  139 GWEGVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNggsvgsgIMDRGyygggaye 218
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 208 --LSMLPLIG--LLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAI 283
Cdd:MTH00032  219 spLAPFAIIGilLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIFGAL 298
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 284 TTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY-LAFLHICNHAFFKAMLFMCSGSIIHNLN-DEQDIRKMGG 361
Cdd:MTH00032  299 TAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHnVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGG 378
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 362 LFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIE------------------------------------AANTSNIN 405
Cdd:MTH00032  379 LIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEltysgrnmgipfgssllkiqgdigikkddrgsiggpEGYPSRGS 458
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 406 AWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINEN----NPLLINPIKRLMIGSIFAGfFLFFNILPTNIPQMT 481
Cdd:MTH00032  459 AFAFWLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHinivDKRVLTVLSLLCFGAIFVG-YLIQDILIGDIEHPI 537
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 482 MPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGF---------FPTIMHRPIPLLNLYISQNTASSL 552
Cdd:MTH00032  538 VPPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLLSIysflggawqGDHLINKLVAIPLFSFGHWGIYKT 617
                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|
gi 1236518600 553 LDLIWLEKTMPKIMSKTQMMLSTTISN-QKGLIKLYFMSFIASALMMLLL 601
Cdd:MTH00032  618 LDRGWLELFGPQGISTIALRVSQFISNlQSGVISRYALVLLSFTIIFLAL 667
ndhF CHL00025
NADH dehydrogenase subunit 5
66-428 8.50e-70

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 239.79  E-value: 8.50e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  66 WHWMIIQTLKLTLSFKLD----YFSMLFIPVALFVtwsiMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLF 141
Cdd:CHL00025   73 WSWTINNDFSLEFGYLIDpltsIMLILITTVGILV----LIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIY 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 142 IGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNL----SMLPLIGLL 217
Cdd:CHL00025  149 IFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFEIFNNLiynnEVNLLFATL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 218 IA------ATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAIC 291
Cdd:CHL00025  229 CAfllflgPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLISLIGIITALLGATL 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 292 ALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNL--------NDEQDIRKMGGLF 363
Cdd:CHL00025  309 ALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLR 388
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 364 KAMPFTSSSLIIGSLALTGMPFLTGFYSKDLII-EAANTSNINAWaltITLIATSLTAVYSTRIIF 428
Cdd:CHL00025  389 KYMPITKTTFLLGTLSLCGIPPLACFWSKDEILnDSWLYSPIFAI---IAWSTAGLTAFYMFRIYL 451
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
43-415 1.25e-67

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 234.04  E-value: 1.25e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  43 AFITSTIPTTLFIF--------SGQEAIISNWHWmiIQTLKLTLSFKLDYFSMLFipvALFVT---WSIMEFSMWYMHAD 111
Cdd:PRK12647   17 GWLLALLPLALFLYflsfipeiAAGETVRGGYAW--VPSLGVNLSFLLDGLSLTF---ALLITgigTLIVLYAGGYLKGH 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 112 PDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGdiGFILTMAWFLM 191
Cdd:PRK12647   92 PDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGG--GLALLAGLILL 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 192 YSNTWEFQQLFMLDNN-------LSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFH 264
Cdd:PRK12647  170 GNVTGTYSLSELLASGdvirehpLYLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLN 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 265 PLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFM 341
Cdd:PRK12647  250 PVLGGTPLWQTILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFM 329
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236518600 342 CSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAanTSNINAWALTITLIA 415
Cdd:PRK12647  330 VAGIIDHETG-TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEA--LLEAPLWSLILTVAA 400
PRK12650 PRK12650
DUF4040 family protein;
65-470 2.98e-64

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 227.62  E-value: 2.98e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  65 NWHWMIIQTL-----KLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFfkYLLM--FLITMLILVTANNL 137
Cdd:PRK12650   55 TWSVTWIPDLlgngvDVNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSF--YLLMtaFMAAMLLLVLADDV 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 138 FQLFIGWEGVGIMSFLLIGwwYGRTDANTAALQAILYNRIGdiGFILTMAWFLMYSNTWEFQQLFML-----DNNLSMLP 212
Cdd:PRK12650  133 VVLFVAWELVSLASFFLIA--RSGSGGEAGSIRTLILTFFG--GLTLLAAVAIAATQTGTTSLSGILhsdvwAEKPGLTT 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 213 LIGLLIA--ATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAI 290
Cdd:PRK12650  209 VVAVLIAvaAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAVWNWLLIIVGMITALMGAV 288
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 291 CALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMP 367
Cdd:PRK12650  289 FAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFaltAAVVHTLAHALFKSSLFMLIGVVDHQAG-TRDIRRLGSLWRRMP 367
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 368 FTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAV----YSTRIIFYALLGQPRfiSMSII 443
Cdd:PRK12650  368 FTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLEAPGGNAGVVLLLVGAALGAVftfaYSARLVLGAFVDGPR--DMSHV 445
                         410       420
                  ....*....|....*....|....*..
gi 1236518600 444 NENNPLLINPIKRLMIGSIFAGFFLFF 470
Cdd:PRK12650  446 KEAPVSLWLPAALPGALSLPLGLVPGL 472
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
55-436 3.52e-62

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 221.60  E-value: 3.52e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  55 IFSGqEAIISNWHWMiiQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTA 134
Cdd:PRK12648   50 VAAG-EVIRAEIEWL--PALGLNLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLS 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 135 NNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGdiGFILtMAWFLMYSN---TWEFQQLfmLDNN---- 207
Cdd:PRK12648  127 GNLILLVVFWELTSLSSFLLIGYWHHRADARRGARMALTVTGAG--GLAL-LAGVLLLGHivgSYDLDVV--LAAGdlir 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 208 -----LSMLPLIglLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGA 282
Cdd:PRK12648  202 ahplyPPALVLI--LLGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLAGTEEWFWIVGGAGL 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 283 ITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHnlndE---QDI 356
Cdd:PRK12648  280 ITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavAAIFHIINHATFKASLFMAAGIIDH----EtgtRDM 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 357 RKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLII-EAANTSNINAWALTITLIAT---SLTAVYSTRIIFYALL 432
Cdd:PRK12648  356 RRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAFSVAYSLRFIHDVFF 435

                  ....
gi 1236518600 433 GQPR 436
Cdd:PRK12648  436 GPPP 439
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
79-430 1.07e-57

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 199.60  E-value: 1.07e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  79 SFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWw 158
Cdd:COG0651    71 VLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVAL- 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 159 YGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFM----LDNNLSMLPLIGLLIAATGKSAQFGLHPWLP 234
Cdd:COG0651   150 GGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeLDPGLLLAAFALLLVGFGIKAALFPLHFWLP 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 235 SAM-EGPTPVSALLhSSTMVVAGIFLLIRFHPLM---ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQL 310
Cdd:COG0651   230 DAYpAAPSPVSALL-SGLLTKVGVYAILRVLTLLfgaDPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQI 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 311 GLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLT 387
Cdd:COG0651   309 GYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLS 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 1236518600 388 GFYSKDLIIEAAntSNINAWALTITLIATS-LTAVYSTRIIFYA 430
Cdd:COG0651   388 GFVSKWLLLQAA--LEAGAWLLAAVLLLSSlLTLAYFVRIFGRA 429
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
74-474 3.45e-56

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 203.15  E-value: 3.45e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  74 LKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFL 153
Cdd:TIGR00940  65 LGLNFTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFL 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 154 LIGWWYGRTDANTAALQAILYNRIGdiGFILTMAWFLMYSNTWEFQQLFML-------DNNLSMLPLIGLLIAATGKSAQ 226
Cdd:TIGR00940 145 LISYWHHRAHSRYGAQKSLTITVFG--GLAMLGGLILLGKITGSFSIDAVIasadairNSPLFGTAMVLVLLGAFTKSAQ 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 227 FGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFST 306
Cdd:TIGR00940 223 FPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFST 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 307 SSQLGLMMVTMGINQPYL----------------AFLHICNHAFFKAMLFMCSGSIIHNlNDEQDIRKMGGLFKAMPFTS 370
Cdd:TIGR00940 303 ISQLGLIMVLLGLGSPSYhyqgddskiyalaavaAVFHLINHATFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPITF 381
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 371 SSLIIGSLALTGMPFLTGFYSKDLIIEAANTS------NINAWALT---ITLIATSLTAVYSTRIIFYALLGQPRfisms 441
Cdd:TIGR00940 382 TLAMIASAAMAGVPPFNGFLSKEMFFAEAITAhlvnpfDTVTLGYLfpyVATVASVFTFVYSLRFIHGVFFGRPK----- 456
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1236518600 442 iiNENNPLLINPIKRLMIGS--IFAGFFLFFNILP 474
Cdd:TIGR00940 457 --PEDLPRKPHEPPRWMLASpdILVLLVLVFGLFP 489
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
66-430 3.26e-54

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 198.99  E-value: 3.26e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  66 WHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHAD-PDINQFFKYLLMFLITMLILVTANNLFQLFIGW 144
Cdd:PRK12644   56 EVVPWIPSLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDePRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFW 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 145 EGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDigfiLTM-AWFLMYSN---TWEFQQLfmLDNNLSMlPLIG----- 215
Cdd:PRK12644  136 ELTTVLSFLLIGHYAERAASRRAALQALLVTTAGG----LAMlVGIIILGQaagTYRLSEL--LADPPTG-PAVSvavvl 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 216 LLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQ 295
Cdd:PRK12644  209 ILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPGFADVPVWRPTVLVLGLATMLLGGWRALRQ 288
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 296 NDIKKIVAFSTSSQLGLMMVTMGINQP--YLAFLH-ICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTsss 372
Cdd:PRK12644  289 HDLKLILAYGTVSQLGFLTVLVGIGTRdaALAGLAmLLAHALFKAALFLVVGIIDHSTG-TRDIRKLSGLGRRQPVL--- 364
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518600 373 LIIGSLALTGM---PFLTGFYSKDLIIEA----ANTSNINAWALTITLIATSLTAVYSTRIIFYA 430
Cdd:PRK12644  365 AVVAALAAASMaglPPLLGFVAKEAALEAvlhdGALGPAGPVVLAGIVLGSILTVAYSLRFLWGA 429
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
134-399 3.61e-54

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 185.98  E-value: 3.61e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 134 ANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQL-----FMLDNNL 208
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 209 SMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLhSSTMVVAGIFLLIRFHPLMEN-NNSIQTLMLCLGAITTL 286
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLPsSPFIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 287 FTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLF 363
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1236518600 364 KAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAA 399
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAA 275
PRK12646 PRK12646
DUF4040 family protein;
9-431 1.56e-53

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 195.74  E-value: 1.56e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   9 LITLIVLSLPLMINTLNINKNMPFTlyvKLSIACAFITSTIPTTLFIFSGQEAIISNW-----HWMiiQTLKLTLSFKLD 83
Cdd:PRK12646    3 LVYLLIAILVIMAMILLTSKRRALA---KYAGYIALVAPIISSIYFLIQIPSVAKLQYlstsiPWM--KTLDINLDLRLD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  84 YFSMLFIPVALFVTWSIMEFSMWYM-HADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRT 162
Cdd:PRK12646   78 GLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 163 DANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPL-----IGLLIAATGKSAQFGLHPWLPSAM 237
Cdd:PRK12646  158 DSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLfipmiFMFLLGAFTKSAQFPFHIWLPRAM 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 238 EGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTM 317
Cdd:PRK12646  238 AAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMV 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 318 GINQPYL-----------------AFLHICNHAFFKAMLFMCSGSIIHNlNDEQDIRKMGGLFKAMPFTSSSLIIGSLAL 380
Cdd:PRK12646  318 GIGGGYAqhqqdaiasiyvfvlfaALFHLMNHAIFKCALFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSM 396
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1236518600 381 TGMPFLTGFYSKDLIIEA-ANTSNINAWALTITLIATSLTAVYSTRIIFYAL 431
Cdd:PRK12646  397 AGVPFLNGFLSKEMFLDAlTQTGQLSQFSLISMIIIVFIGVIASIFTFTYAL 448
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
49-473 5.81e-53

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 193.99  E-value: 5.81e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  49 IPTTLFIF--------SGQEAIISNWHWMiiQTLKLTLSFKLDYFSMLFipvALFVTWS---IMEFSMWYMHADPD-INQ 116
Cdd:PRK12645   37 VPVVLFIYflslipttMSGNTVMKTLPWI--PSLGINFTLYVDGLSLLF---ALLITGIgslVVLYSIYYLSKKKEqLGN 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 117 FFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDI----GFILtmawFLMY 192
Cdd:PRK12645  112 FYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITVFGGLsmlgGFIL----LYIM 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 193 SNTWEFQQLF-----MLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM 267
Cdd:PRK12645  188 TGSFSIREMIanadeIQNSPLFIPAMILILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIF 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 268 ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGI-----------NQPYL-----AFLHICN 331
Cdd:PRK12645  268 AGSQVWFWTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIgaaslhyqgddSKIYAaaitaAIFHLIN 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 332 HAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEA------ANTSNIN 405
Cdd:PRK12645  348 HATFKGSLFMIVGIVDHETG-TRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESmlnateANLFSLD 426
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518600 406 AWALTITLIA---TSLTAVYSTRIIFYALLGQPRFISMSIINENNPL--LINPIkrlMIGSIFAGFFLFFNIL 473
Cdd:PRK12645  427 TWGVLFPVIAwvaSVFTFVYSIIFIFKTFFGKYKPEQLPKKAHEAPIgmLISPI---ILASLVVVFGLFPNIL 496
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
42-435 2.15e-52

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 189.74  E-value: 2.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  42 CAFITSTIptTLFIFSGQEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYL 121
Cdd:PRK07390   49 LAFVHSLL--ALRAIWNQPPQQLSFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALL 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 122 LMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQL 201
Cdd:PRK07390  127 GFFEAAMSGLALSDSLFFSYVLLEILTLSTYLLVGFWYAQPLVVTAARDAFLTKRVGDLLLLMGVVALSPLAGTLNFSDL 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 202 FMLDNNLSMLP----LIGL-LIAA-TGKSAQFGLHPWLPSAMEGPTPVSaLLHSSTMVVAGIFLLIRFHPLMENNNSIQT 275
Cdd:PRK07390  207 AAWAATANLDPltatLLGLaLIAGpTGKCAQFPLHLWLDEAMEGPNPAS-ILRNSVVVATGAWVLIKLQPVLALSPVALT 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 276 LMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDeQD 355
Cdd:PRK07390  286 VLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILTTIT-QD 364
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 356 IRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSkdLIIEAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQP 435
Cdd:PRK07390  365 LTELGGLWSRMPATTLAFLVGSAGLVALLPLGGFWA--LLRLADGLWAVSPWLVGVLLLVNALTAFNLTRVFRLVFLGKP 442
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
76-399 4.70e-50

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 185.42  E-value: 4.70e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  76 LTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLI 155
Cdd:PRK12649   72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 156 GWWYGRTDANTAALQAILYNRIGdiGFILTMAWFLMYSNTWEFQQLFMLDNN----------LSMLPLIGLLIAATGKSA 225
Cdd:PRK12649  152 GYWRHRPESVYGATKSLLITAGG--GLFMFAGFLLLHVITGTYDIATILQDSelienikghpLFLITLILIFIGAAAKSA 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 226 QFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFS 305
Cdd:PRK12649  230 QGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTEAWFILVSGTGMITMVLAGFLAFRQTDIKAILAYS 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 306 TSSQLGLMMVTMGI---NQPYLAF----LHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSL 378
Cdd:PRK12649  310 TISQLAYLMTMYGYttyHEPGLGVaaatFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAAL 388
                         330       340
                  ....*....|....*....|.
gi 1236518600 379 ALTGMPFLTGFYSKDLIIEAA 399
Cdd:PRK12649  389 AMAGIPPLNGFLSKEMFYETS 409
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
80-423 4.83e-49

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 177.47  E-value: 4.83e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  80 FKLDYFSMLFIPVALFVTWSIMEFSMWYMHA-------DPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSF 152
Cdd:PRK06525   71 LVIDPVSVLIGFVVVLLGLLVTLYSTGYMSPgnrehpvHEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSW 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 153 LLIGWwYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPW 232
Cdd:PRK06525  151 ALISY-YQSPKALRSALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSW 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 233 LPSAMEGPTPVSALLHSSTMVVAGIFLLIRFhpLMENNN---SIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQ 309
Cdd:PRK06525  230 LPDAMEAPTPASAYLHAASMVKVGVYIFARA--IQSMGPiphVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQ 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 310 LGLMMVT--MGINQPYLAF----LHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGM 383
Cdd:PRK06525  308 LGYMFFGlsLAILGSRLALegsiAYIFNHAFAKSLFFLVAGALSYSCG-TRLLPRLRGVLKKLPLVGVGFCVAALAITGV 386
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1236518600 384 PFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYS 423
Cdd:PRK06525  387 PPFNGFFSKFPIFAAGFELSVEYWILLPAMVLLLIESVAS 426
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
76-529 1.29e-48

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 177.42  E-value: 1.29e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  76 LTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLI 155
Cdd:MTH00095   37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 156 gWWYGRTDANTAALQAILYNRIGDIgFILTMAWFLMYSNTWEFQQLFMldnnlSMLPLIGLLIAATGKSAQFGLHPWLPS 235
Cdd:MTH00095  117 -LFYNNWDSNSGAMNTALTNRIGDF-FIFLFFSGFIFSSYYFFSFSFF-----SSSMILMLLLTSFTKSAQFPFSSWLPK 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 236 AMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNsIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMV 315
Cdd:MTH00095  190 AMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMN-VMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSML 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 316 TMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLI 395
Cdd:MTH00095  269 TFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELI 348
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 396 IEAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFIS--MSIINENNPLLInpikrLMIGSIFAGFFLFFNIL 473
Cdd:MTH00095  349 LELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNvySSSVLMNFLSLM-----LVFFSVFFLWWLNFNLL 423
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 474 PTNIPQMTMPKYLKLMAMMVTLLGFMLAMELNIMTNNLKLNMSSNTFKFSNMLGFF 529
Cdd:MTH00095  424 NLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNL 479
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
422-602 2.64e-42

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 150.39  E-value: 2.64e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 422 YSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNiPQMTMPKYLKLMAMMVTLLGFMLA 501
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKP-PMMTMPLYLKLLALLVTILGLLLG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 502 MELNIMTNNLKLN-MSSNTFKFSNMLGFFPTIMHRPIPLLNLYISQNTASSlLDLIWLEKTMPKIMSKTQMMLSTTISN- 579
Cdd:pfam06455  80 LELSNLSNKQLKKsLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQ-IDQGWSEKFGPQGIAKTLMTLSKIIQNs 158
                         170       180
                  ....*....|....*....|...
gi 1236518600 580 QKGLIKLYFMSFIASALMMLLLI 602
Cdd:pfam06455 159 QKGLIKIYLLSFLLWLLLLLLLI 181
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
76-468 4.64e-41

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 155.42  E-value: 4.64e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  76 LTLSFKLDYFSMLFIPVALFVTWsimeFSMWYMHADPDINQFFKY-LLMFLITMLI--LVTANnLFQLFIGWEGVGIMSF 152
Cdd:PRK08375   69 IGIELRADSLSALFLLVTSILAI----AALLYAIGYGEHRQTRFYaLFLLLLAGLLgaLLTAD-LFNLFVFLEIMSLSSY 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 153 LLIGWwYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQL--FMLDNNLSMLPLIGLLIAATGKSAQFGLH 230
Cdd:PRK08375  144 ALVAM-GGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagALAENPTVVTAFGFVLLALALKAAVFPLH 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 231 PWLPSAMEGPTPVSALLHSSTMVVAGIFLLIR-----FHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFS 305
Cdd:PRK08375  223 TWLPRAYPAAPPVVTALLSGLVTKVAVYALIRiyftvFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYS 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 306 TSSQLGLMMVTMGINQP---YLAFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTG 382
Cdd:PRK08375  303 TVSQMGYILLGLALLTPlalAAGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIG 381
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 383 MPFLTGFYSKDLIIEAANtSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLINPIKRLMIGSI 462
Cdd:PRK08375  382 VPPTSGFVSKWYLVVGAV-EAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSEAPKQEAPLGMLAPSLALALLSL 460

                  ....*.
gi 1236518600 463 FAGFFL 468
Cdd:PRK08375  461 LLGIYA 466
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
82-446 9.77e-37

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 143.96  E-value: 9.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  82 LDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGR 161
Cdd:PRK12667   80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDR 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 162 TDANTAALQAILYNRIGD------IGFI------LTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAA---TGKSAQ 226
Cdd:PRK12667  160 GDAVEAAIKYALIGAVGTtlyflaLAFLyatfgtLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALwafTIKAAI 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 227 FGLHPWLPSAM-EGPTPVSALLhSSTMVVAGIFLLIRF--------HPLMENNNSIQTLMLCLGAITTLFTAICALTQND 297
Cdd:PRK12667  240 FPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFlytifgisPSLIDFRAALSPILIILGAVSAIIGALMMVVQKD 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 298 IKKIVAFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLI 374
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFL 397
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518600 375 IGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALtITLIATSLTAVYSTRIIFYALLGQPRFISMSIINEN 446
Cdd:PRK12667  398 IGALSLVGIPPLNGFFSKLLLFNALLESGFYLPAL-VLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKES 468
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
71-436 3.68e-34

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 135.98  E-value: 3.68e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  71 IQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPdiNQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIM 150
Cdd:COG1008    69 IPSLGISYHLGVDGISLPLVLLTALLTPLAILASWNEIKKRP--KLYYALLLLLEAGMIGVFLALDLFLFYVFWELMLIP 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 151 SFLLIGWWyGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLS----MLPLIGLLIAATGKSAQ 226
Cdd:COG1008   147 MYFLIGIW-GGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPltaqLLLFLAFFIAFAVKVPM 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 227 FGLHPWLPSA-MEGPTPVSALLhSSTMVVAGIFLLIRFH-PLM-ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVA 303
Cdd:COG1008   226 FPFHTWLPDAhVEAPTAGSVLL-AGVLLKMGGYGLLRFAlPLFpEASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIA 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 304 FSTSSQLGLMMV------TMGINQpylAFLHICNHAFFKAMLFMCSGSIIHNLNDeQDIRKMGGLFKAMPFTSSSLIIGS 377
Cdd:COG1008   305 YSSVSHMGFVLLgifalnPLGLQG---AVLQMVSHGLITAALFLLVGVLYDRTHT-RDIADLGGLAKRMPVLAALFLLAA 380
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518600 378 LALTGMPFLTGFYSKDLIIEAANTSNInaWALTITLIATSLTAVYSTRIIFYALLGQPR 436
Cdd:COG1008   381 LASLGLPGTSGFVGEFLVLLGAFQVNP--WLAILAALGLILTAAYLLWMYQRVFFGPLK 437
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
98-347 3.31e-32

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 130.59  E-value: 3.31e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  98 WSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRI 177
Cdd:PRK08168   83 WVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRL 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 178 GDIgfILTMAWFLMYSNT--WEFQQL---FMLDNNLSMLPLIGLLI--AATGKSAQFGLHPWLPSAMEGPTPVSALLHSS 250
Cdd:PRK08168  163 AEL--LLLAAAALAYLEVgsLSLSALwahLAAQGASPSLQAAALLLvlAVILKTAQLPVHGWLIQVMEAPTPVSALLHAG 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 251 TMVVAGiFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHIC 330
Cdd:PRK08168  241 VVNLGG-FVLIRFAPLLEQAPPARWLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLV 319
                         250
                  ....*....|....*..
gi 1236518600 331 NHAFFKAMLFMCSGSII 347
Cdd:PRK08168  320 AHSLYKAHAFLSASEAV 336
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
132-399 8.72e-32

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 130.01  E-value: 8.72e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 132 VTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGdiGFILTMAWFLMYSNT--WEFQQLFMLDNNLS 209
Cdd:PRK12668  110 VFAGDLLTLFVFWELMAFTSTFLV-WARGTKAAVRAGFRYLLVHVLG--GVLLLAGILLHYAETgsFAFGAIAGLGGTAA 186
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 210 MLPLIGLLIaatgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMEnnnsiqtLMLCLGAITTLFTA 289
Cdd:PRK12668  187 WLILIGFGV----NAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAFPGTE-------LLIYIGAAMAVYGV 255
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 290 ICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAM 366
Cdd:PRK12668  256 FFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLYRTG-TEKLTELGGLYRSM 334
                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236518600 367 PFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAA 399
Cdd:PRK12668  335 PLTALFCLVGALSISAFPLFSGFVSKSMIISAA 367
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
78-481 1.16e-29

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 122.37  E-value: 1.16e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  78 LSFKLDYFSMLFIPVALFVtWSIMEFSMWymhaDPDINQFFKYLLMFLITMLILV-TANNLFQLFIGWEGVGIMSFLLIG 156
Cdd:PRK07234   61 VTLRADALSGYFILTNALV-TLAVIFYCW----ESAKTRFFYAQLLILHGSVNAAfVCADLISLYVALEVLSIATFLLVA 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 157 wwYGRTD-ANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIaatgKSAQFGLHPWLPS 235
Cdd:PRK07234  136 --YPRTDrAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPEAFALIALGLLV----KGGIFVSGLWLPL 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 236 AMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLmlcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMV 315
Cdd:PRK07234  210 THSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRI---FGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILA 286
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 316 TMGINqpylAFLHICnHAFFKAMLFMCSGsIIHNLNDEQDIRKMGGLFKAMPftsssLIIGSLALTGMPFLTGFYSKDLI 395
Cdd:PRK07234  287 APLVG----GLYALA-HGLVKSTLFLCAG-ALPSRNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKVLT 355
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 396 IeaantSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISmsiineNNPLLINPIKRLMIGSIFAGFFLFFNILPT 475
Cdd:PRK07234  356 L-----KNLLPWQAIALNLAAVGTAASFWKFIFLPFSADDEDKK------PLPGFWNAIALLLGGLFLANGVYTEAYTLG 424

                  ....*.
gi 1236518600 476 NIPQMT 481
Cdd:PRK07234  425 NILKAL 430
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
80-467 2.84e-29

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 121.74  E-value: 2.84e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  80 FKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWY 159
Cdd:PRK08376   86 WEVDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRN 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 160 GRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEF----QQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPS 235
Cdd:PRK08376  166 DTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMaylaVKMSENPTVVAKIALALFIAGLAMKSGAVPVHMWLPD 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 236 AM-EGPTPVSALLHSSTmvVAGIFLLIR-----FHPLMeNNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQ 309
Cdd:PRK08376  246 AYpAAPSSISAMLLVIK--QAGLYALARvlfsiYGPAI-NLATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQ 322
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 310 LGLMMVTMGINQPYL---------------AFLHICNHAFFKAMLFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLI 374
Cdd:PRK08376  323 IGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAGAVIYETG-TRNLNELGGLARTMPKTTIAFL 401
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 375 IGSLALTGMPFLTGFYSKDLIIEAanTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLInPI 454
Cdd:PRK08376  402 IGAAAIVGLPPFNGFASKWLIYES--SALFNPILGVIAMIGSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPMLV-PM 478
                         410
                  ....*....|...
gi 1236518600 455 KRLMIGSIFAGFF 467
Cdd:PRK08376  479 LILAIAIIGMGLF 491
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
123-436 3.95e-29

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 122.69  E-value: 3.95e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 123 MFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALqaiLYNRIGDIGFILTM-AWFLMYSNTWEFQQL 201
Cdd:PRK06521  121 LFLASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGF---LYLLMAHAGALAILlAFGLLARESGSYDFA 197
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 202 FMLDNNLSmlPLIG---LLIAATGKSAQFG---LHPWLPSAM-EGPTPVSALLhSSTMVVAGIFLLIR--FHPLMENNNS 272
Cdd:PRK06521  198 AMRAAHLS--PFWAslvFLLALFGFGAKAGlvpLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRvvFDLLGAPGWW 274
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 273 IQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGI-------NQPYLAFL-------HICNHAFFKAM 338
Cdd:PRK06521  275 WGVLVLALGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLamvfiayGMPLLAALaltaalyHLLNHALFKSL 354
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 339 LFMCSGSIIHNLNdEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAA-NTSNINAWALTIT----- 412
Cdd:PRK06521  355 LFLGAGAVLHATG-TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLLLQSLlSSPGLPQWGLKLAvpiaa 433
                         330       340
                  ....*....|....*....|....*...
gi 1236518600 413 -LIA-TSLTAVYsTRIIFY--ALLGQPR 436
Cdd:PRK06521  434 aMLAlTAALAAM-CFVKFYgiTFLGRPR 460
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
6-414 4.85e-29

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 120.81  E-value: 4.85e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   6 SFMLITLIVLSLPLMINTLnINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHWMiiqtlkltlsFKLDYF 85
Cdd:PRK06458    2 SYSILFALLLLIPLLASLL-LFALRKRRLVATLNVLGITLTLILALWLVFTVPDAGEIFAAGLW----------FFIDDL 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  86 SMLFIPVALFVTWSIMEFSMWYM-----HADPDINQFFKYLLM---FLITMLILVTANNLFQLFIGWEGVGIMSFLLIGW 157
Cdd:PRK06458   71 NVFFLALIGVVGFLTSLYSIGYMrheveHGELSPVTLRLYYGMyqlFLFTMLLALTSNNLGLMWVAIEATTLSSALLVGI 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 158 wYGRTDANTAALQAILynrIGDIGfiLTMAWF---LMYSN--------------TWEFQQLFMLDNNLSMLPLIGLLIAA 220
Cdd:PRK06458  151 -YRTRASLEAAWKYII---ICSVG--VAFALFgtiLVYANaatvmgdgemailwTELLKHASLLDPTLMKLAFVFLLIGF 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 221 TGKSAQFGLHPWLPSA-MEGPTPVSALLHSSTMVVAgIFLLIRFHPLME---NNNSIQTLMLCLGAITTLFTAICALTQN 296
Cdd:PRK06458  225 GTKVGLFPMHAWLPDAhSEAPSPVSALLSGVLLNVA-LYAVLRYYILIDaaiGSDFPGRLLLIFGLLSVLVAAFFLLRQR 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 297 DIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHNLnDEQDIRKMGGLFKAMPFTSSSL 373
Cdd:PRK06458  304 DIKRLFAYSSIEHMGLIAFALGIGGPLgifAALLHMLNHSLTKSAIFFASGNVLQKY-GTRDINVIRGLLKVSPLTGWGL 382
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 1236518600 374 IIGSLALTGMPFLTGFYSKDLIIEAANTSniNAWALTITLI 414
Cdd:PRK06458  383 MLGALAIAGMPPFGVFISEFLILTAGLAR--GPLLIAILLL 421
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
3-398 5.17e-29

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 122.15  E-value: 5.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   3 LFTSFMLITLIVLSLPLMINTLNInKNMPFTLYVKLSIACAFITSTIPttlfIFSGQEAIISNWHWMIiqtlKLTLSFKL 82
Cdd:PRK08667    5 LFLGAILLLLAAAVIPLVFRHKRK-RVWQSVLWLVIAIALLLFAGSLQ----LFTGNPLDIPLWGIAP----GLDITFHI 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  83 DYFSMLFIPVALFVTWSIMEFSMWY---MHADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWY 159
Cdd:PRK08667   76 DRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERANLLSALTALFILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDY 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 160 GRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSmLPLIGLLIAATGKSAQFGLHPWLPSAMEG 239
Cdd:PRK08667  156 QEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS-LVFLLLFLGFGIKAGIIPFHKWLPYAHPA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 240 -PTPVSALLhSSTMVVAGIFLLIRF-HPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTM 317
Cdd:PRK08667  235 sPSNVSALM-SGVMLKVAVYGLVRFlMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 318 GI-------NQPYLAFL-------HICNHAFFKAMLFMCSGSIIHNLNDeQDIRKMGGLFKAMPFTSSSLIIGSLALTGM 383
Cdd:PRK08667  314 GLyvifgvyGLDTLALLalggalfHSLNHALFKSLLFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAAL 392
                         410
                  ....*....|....*
gi 1236518600 384 PFLTGFYSKDLIIEA 398
Cdd:PRK08667  393 PPFNGFASELLLYES 407
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
7-474 5.72e-29

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 120.69  E-value: 5.72e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   7 FMLITLIVLSLPLMiNTLNINKNMPFTLYVKLSIACAFITSTIPTTLFIFSGQEAiisnwHWMIIQTLKLTLSFKLDYFS 86
Cdd:PRK06589   12 LLLSTLLVGALNLT-SPFATKKDSFIRNFLLITISIFFFGNILLIDLLFLKGIRA-----QFELMDFGNYSIGLHLEPLG 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  87 MLFIPVALFVTWSIMEFSMWYMhADPDINQFFKYLLMFLITMLILVTAN---NLFQLFIGWEGVGIMSFLLIGwwYGRTD 163
Cdd:PRK06589   86 LIFLLLIGFLWICALLYTPKYL-AINNIDSSSRFLFFFNLTILIGVLIAlssDLFTMFVCYELLTISTAFLIG--HTRNN 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 164 ANTAALQAILYNRIGDIGFILTMAWFLMYS--NTWEFQQLFMLDNNLSMLPLIgLLIAATGKSAQFGLHPWLPSAMEGPT 241
Cdd:PRK06589  163 ISLSGGYKYLKILMISALLLFLPAVILIYTktGNLDFVSGGLFSKNQSIILLL-MFIYGIAKTAIFPVHSWLPAAMVAHY 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 242 PVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLM-----LCLGAITTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMV 315
Cdd:PRK06589  242 PVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFaefnwLIFIPIVSIFYSsLKALKTDNIKKILAYSTISQLSLALL 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 316 TMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIhNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSK 392
Cdd:PRK06589  322 SAFILTPKalgAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISK 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 393 DLIIEAANTSNiNAWALTITLIATSLTAVYSTRIIFYAL--LGQPRFISMSIINENNPLLINPIKRLMIGSIFAGFFLFF 470
Cdd:PRK06589  401 FLILLAASEQN-QPWLSIIVMLVVIASSILSALYLLKILssIYKPSLSENSFITKSLPYLMQISVITCCCALTLFYFIQI 479

                  ....
gi 1236518600 471 NILP 474
Cdd:PRK06589  480 LIRE 483
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
85-427 1.25e-26

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 113.71  E-value: 1.25e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  85 FSMLFIPVALFVTWSIMEFSMWYMHADPdinqFFKYLLMFLITMLI---LVTANNLFQLFIGWEGVGIMSFLLIGwwYGR 161
Cdd:PRK08377   79 FAALFVLIIAIVSFIMSIFSLKAVEVEP----IDKYAMLFLLLMLGatgMIATGDIFNLFVFMEITAITAYALTA--YNK 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 162 T-DANTAALQAILYNRIGDIGFILTMAwfLMYSNTWEFQQLFMLDNNLSMLPLI-----GLLIAATGKSA-QFGLHPWLP 234
Cdd:PRK08377  153 TgEAAEASMKYIVLGGIGSSFFLIGVA--LIYGATGTLNMAHIAQLAGTIDPTVaqvglALLIFGLAVEAeLFPLNAWAP 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 235 SAMEG-PTPVSALLhSSTMVVAGIFLLIRFHPLMENNN---SIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQL 310
Cdd:PRK08377  231 DAYQAaPHPITVMF-SAFVVKAGLYAMARILYLMQNANgwsSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQV 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 311 GLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGSIIHNLNDEQdIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLT 387
Cdd:PRK08377  310 GMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITLGGTE-IEKFEGLGKRMPLTALALTIGALSTVGIPLFN 388
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1236518600 388 GFYSKDLIIEAANTSNiNAWALTITLIATSLTAVYSTRII 427
Cdd:PRK08377  389 VFWSKFRIILAGLSAG-YTWPVALVLGASVVEAVYYFRLI 427
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
76-434 3.66e-26

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 113.17  E-value: 3.66e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  76 LTLSFKLDYFSMLFIPVALFVTWSIMEFSM-WYMHADPDINQFfkyLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLL 154
Cdd:PRK08668   61 FKLTFTLTHLSWFFAMISLLVIFSVAFFMVsEKTKNDAYFNMF---ALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMM 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 155 IgwWYGRTDANTAALQAILYNRIGDIGFIltMAWFLMYSNTWEF-----QQLFMLDNNLSMLPLIGLLIAATG--KSAQF 227
Cdd:PRK08668  138 V--PMGKKESRKASLKYFVLSAIGAYAML--YAIFLIYAKTGTFdfadiSQGLINDTSTGFALIVFLFLLAFGvaKAGIF 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 228 GLHPWLPSAM-EGPTPVSALLHS--STMVVAGIFLLIRFHPLMENNNSIQT---------LMLCLGAITTLFTAICALTQ 295
Cdd:PRK08668  214 PLHVWAPDAYsEAPQSFSAVLSGqlSKLGAYGFLLVLYVLPGTKLFSEFGTyrgvplfnyILAWLGNISIIVGTLMAILQ 293
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 296 NDIKKIVAFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHNlNDEQDIRKMGGLFKAMPFTSSS 372
Cdd:PRK08668  294 EDIKKLIAYSSVANGGYILVGLGLGTSLGfagGLFHVFNHALFKGLFFLIFAAVIYR-TGTTKISEMGGLIEKMPFTFAM 372
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518600 373 LIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWAlTITLIATSLTAVYSTRIIFYALLGQ 434
Cdd:PRK08668  373 YLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA-FMAFFGSIGSFLYVFRPLAGVFLGQ 433
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
118-425 7.01e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 111.51  E-value: 7.01e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 118 FKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWFlmysntwe 197
Cdd:MTH00063   79 NKLIVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFFLI-LFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLS-------- 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 198 fqqlFMLDNNLSMLPLIGLLIAATgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNSIQTLM 277
Cdd:MTH00063  150 ----CWGGSGSFLCCLFFFLIVFT-KSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFS 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 278 LCLgAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIR 357
Cdd:MTH00063  225 VLL-LLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSN 303
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518600 358 -----KMGGLFkaMPFTSSSLIIGslaLTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIATSLTAVYSTR 425
Cdd:MTH00063  304 cvyssILYGSW--NLFYLFLLVLG---LSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFR 371
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
5-436 2.49e-24

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 106.83  E-value: 2.49e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   5 TSFMLITLIVLsLPLM--INTLNINKNMPftlyvKLSIACAFITSTIPTTLFIF------SGQEAIISNWHWMIIQTLKL 76
Cdd:PRK05846    1 MNWPLLSLLIF-LPLIggLLVLLTERFGA-----RLARWIALIGTLLTLLLSLVlwigfdSSNAGFQFVEKHPWIPRFGI 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  77 TLSFKLDYFSMLFIPVALFVTwSIMEFSMWYMhADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIG 156
Cdd:PRK05846   75 SYHLGVDGISLLLVVLTALLT-PLAVLASWEE-IKKRVKFYMAALLWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIG 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 157 WWyGRTDANTAALQAILYNRIGD----IGFILTMAWFLMYSNTWEFQQLFM--LDNNLSMLPLIGLLIAATGKSAQFGLH 230
Cdd:PRK05846  153 VW-GGKNRIYAATKFFLYTLLGSllmlVAIIYLVVVYYNATGTFDIADLLNlpLPPGVQYWLFLAFFIAFAVKMPMFPLH 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 231 PWLPSAM-EGPTPVSALLhsstmvvAGIFL------LIRFH-PLMEN-NNSIQTLMLCLGAITTLFTAICALTQNDIKKI 301
Cdd:PRK05846  232 TWLPDAHvQAPTAGSVLL-------AGILLkmgaygLLRFSlPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKL 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 302 VAFSTSSQLGLmmVTMGI---NQPYL--AFLHICNHAFFKAMLFMCSGSIIHNLNDEqDIRKMGGLFKAMPFTSSSLIIG 376
Cdd:PRK05846  305 IAYSSISHMGF--VTLGIfagNQLGIqgAIFQMISHGLSSAALFLLVGVLYDRLHTR-DIADYGGLAKVMPVLAAFFLFF 381
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 377 SLALTGMPFLTGFYSKDLIIEAANTSNInaWALTITLIATSLTAVYSTRIIFYALLGQPR 436
Cdd:PRK05846  382 AMASLGLPGTSGFVGEFLILLGSFQVNP--VIAFIATTGLILAAVYSLWLYQRVMFGPVK 439
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
79-477 1.86e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 100.58  E-value: 1.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  79 SFKLDYFSMLFIPVALFVTWSIMEFSMWYMhADPDINQFFKYLLMFLIT--MLILVTANNLFQLFIGWEGVGIMSFLLIG 156
Cdd:COG1007    65 MFVVDGFALFFKLLILLAALLVLLLSRDYL-ERRGLLRGEFYALLLFATlgMMLMASANDLLTLFLGLELLSLSLYVLVA 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 157 WWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQL---FMLDNNLSMLPLIGLLIAATG---KSAQFGLH 230
Cdd:COG1007   144 FRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaaLAAGGANSPLLLLGLVLVLAGlafKLSAVPFH 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 231 PWLPSAMEG-PTPVSALLhSSTMVVAGIFLLIRF--HPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTS 307
Cdd:COG1007   224 MWTPDVYEGaPTPVTAFL-ATAPKIAAFAALLRLlvEAFPGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSI 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 308 SQLGLMMV---TMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMP 384
Cdd:COG1007   303 AHAGYLLLglaAGTPLGVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIP 382
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 385 FLTGFYSKDLIIEAAntSNINAWALTITLIATS-LTAVYSTRIIFYALLGQPrfismsiiNENNPLLINPIKRLMIgSIF 463
Cdd:COG1007   383 PTAGFFGKFYVFSAA--VEAGLYWLAVIAVLNSvISAYYYLRVVKAMYFDEP--------EEEAPISAPPGLRVAL-VIA 451
                         410
                  ....*....|....
gi 1236518600 464 AGFFLFFNILPTNI 477
Cdd:COG1007   452 ALLVLLLGIFPGPL 465
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
78-467 8.76e-22

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 98.87  E-value: 8.76e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  78 LSFKLDYFSMLFIPVALFVTWSIMEFSmwYMHADPDINQFFKY-LLMFLITMLI--LVTANnLFQLFIGWEGVGIMSFLL 154
Cdd:PRK12663   71 IQFTGDSLSALMVTTASFVATAIMAYG--FGDIEHSGRRYGFPpFILLLMAGVIgsFLTGD-LFNLYVWFEVMLIASFVL 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 155 IGWWyGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFM----LDNNLSMLPLIGLLIAATG-KSAQFGL 229
Cdd:PRK12663  148 ITLG-QEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIAMrlndMGDTATLTTIALLFLLAFGmKAALFPF 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 230 HpWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM--ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTS 307
Cdd:PRK12663  227 M-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLfpQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVI 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 308 SQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHnLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMP 384
Cdd:PRK12663  306 SSIGFILLGLALGTPAGingAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLP 384
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 385 FLTGFYSKDLIIEAAntSNINAWALTITLIATSLTAVYS-TRIIFYALLGqPRFISMSIINENNPLLINPIKRLMIGSIF 463
Cdd:PRK12663  385 PFSGFWGKVLLVQGA--LDNGAYILLALMLITSLITMYSlFRIFFLAYWG-DKDGEEVNFKPIPLYRKLPLSILAVVVIA 461

                  ....
gi 1236518600 464 AGFF 467
Cdd:PRK12663  462 MGIA 465
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
78-438 1.66e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 95.02  E-value: 1.66e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  78 LSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINqFFKYLLMFLITMLI-LVTANNLFQLFIGWEGVGIMSFLLIG 156
Cdd:PRK07691   71 IVFVADMFAALLVLTSSIITFLVILYSFQTIGIERERY-YYYPSVLFMLAGVNgAFLTGDIFNLFVFFEVMLMASYVLIV 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 157 wwYGRTDAN-TAALQAILYNRIGDIGFILTMAWFLMYSNTWEF-------QQLFMLDNNLSMLPLIGLLIAATGKSAQFG 228
Cdd:PRK07691  150 --IGGTKIQlRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMadisvkiAELSAGQTGLITVVAILFLFVFATKAGLFP 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 229 LHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNNS--IQTLMLCLGAITTLFTAICALTQNDIKKIVAFST 306
Cdd:PRK07691  228 LYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFSHDTsfTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNI 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 307 SSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSIIHnLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGM 383
Cdd:PRK07691  308 MIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIAALSLAGI 386
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 384 PFLTGFYSKDLIIEAanTSNINAWALTITLIATSLTAVYST-RIIFYALLGQPRFI 438
Cdd:PRK07691  387 PPLSGFYGKFFIVEG--TFEAGFYVSGIIVLLSSLLVLYSViKIFLKGFWGEPKGY 440
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
114-427 3.80e-20

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 93.64  E-value: 3.80e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 114 INQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTdANTAALQAILYNRIG------DIGFILTMA 187
Cdd:PRK12662  109 IPSFYSAFLLCLGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKK-ALVAAFEYLIIGTIGatfyliGIGFLYAIT 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 188 WFLMYSNTWEFQQLfMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAM-EGPTPVSALLhSSTMVVAGIFLLIR-FHP 265
Cdd:PRK12662  188 GTLNMGDMFLIIQD-LPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYsEAPSFISVFF-SGTSTKVMIYLIIRiVYD 265
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 266 LMENNNSIQTL-----MLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKA 337
Cdd:PRK12662  266 VFKANFVFTTLpfnnvFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKS 345
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 338 MLFMCSGSIIHNLnDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSniNAWALTITLIATS 417
Cdd:PRK12662  346 ALFMVSGSISYHF-GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKS--NAWIGLVVLLVGS 422
                         330
                  ....*....|.
gi 1236518600 418 -LTAVYSTRII 427
Cdd:PRK12662  423 gLSVIYVWKIV 433
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
6-351 1.20e-19

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 92.41  E-value: 1.20e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   6 SFMLITLIVLSLPLMINTLNINKNMPFTlYVKLSIACAFITSTIPTTLFIFSGQEAIISNWHwmiiqtlkltlSFKLDYF 85
Cdd:PRK08601    9 TLLTLFFIALIIALLSGLLFLNPRMPLR-YVRIHIGILALPSLVALLGLIGANGDVVVGPWH-----------LDTLAWL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  86 SMLFIpvaLFVTWSIMEFSMWYMHADPDINQFFKylLMFLITMLILVT--ANNLFQLFIGWEGVGIMSFLLIGWWYGRTD 163
Cdd:PRK08601   77 MAFFV---LTLGFIIQRFSVRYLLGDRSYRKYFA--LFTFTTGFASLAwlSGDLRLMALCWGATLLGLTLLIGLNKGWKV 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 164 ANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDN--NLSMLP--LIGLLI--AATGKSAQFGLHPWLPSAM 237
Cdd:PRK08601  152 AREAAKISGMLFLISWLALALAIVWLFIATGEWQLTSVLSNENlaQLGTWEktGINLLLilAVMIPAAQWPFQRWLIESA 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 238 EGPTPVSALLHSStMVVAGIFLLIRFHPLMeNNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTM 317
Cdd:PRK08601  232 VAPTPVSAIMHAG-LVNAGGIMLTRFSPLF-HDDIAQILLLIFASISVLIGTGISLVQVDYKRQLVGSTMAQMGFMLVQC 309
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1236518600 318 GINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLN 351
Cdd:PRK08601  310 ALGAYSAAIIHLILHGLFKATLFLQSGSAVPRFN 343
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
71-391 6.04e-19

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 90.09  E-value: 6.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  71 IQTLKLTLSFKLDYFSMLFIPVALFVTwSIMEFSMWYMHADPdinQFFKYLLMFLITMLILV-TANNLFQLFIGWEGVGI 149
Cdd:PRK12561   46 LPQIGLEWSLGVDGLSMPLVLLSGLIT-TLSIFASWKVTRKP---RLFYFLMLVLYSAQIGVfLAQDLLLFFLMWELELV 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 150 MSFLLIGWWYGRtDANTAALQAILYNRIGDIgFILTMAWFLMYSN---TWEFQQLFMLDNNLS--MLPLIGLLIAATGKS 224
Cdd:PRK12561  122 PVYLLISIWGGQ-KRLYAATKFILYTALASI-FILVAGLALALSGdtfTFDLAELGAKSYPLAleLLLYAGFLIAFGVKL 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 225 AQFGLHPWLPSAM-EGPTPVSallhsstMVVAGIFL------LIRFHPLMENNNSIQ--TLMLCLGAITTLFTAICALTQ 295
Cdd:PRK12561  200 PIFPLHTWLPDAHgEASAPVS-------MILAGVLLkmggyaLIRFNVQMLPDAHVYfaPALAILGVVNIIYGALNAFAQ 272
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 296 NDIKKIVAFSTSSQLGLMMV------TMGINQpylAFLHICNHAFFKAMLFMCSGSI---IHNLNdeqdIRKMGGLFKAM 366
Cdd:PRK12561  273 DNVKRRLAYSSVSHMGFVLLgiaaftDLGISG---AMLQMISHGLIAAALFFLTGVTyerTHTLS----IPNMGGLAKVM 345
                         330       340       350
                  ....*....|....*....|....*....|
gi 1236518600 367 P-----FTSSSLiiGSLALTGMpflTGFYS 391
Cdd:PRK12561  346 PktfalFTASSM--ASLALPGM---SGFVS 370
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
79-436 2.17e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 85.26  E-value: 2.17e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  79 SFKLDYFSMLFIPVALFVTWSIMEFSMWYMhADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWW 158
Cdd:PRK05777   68 MLVVDGFALFLKGLILLASLLALLLARPYL-EDRGRGEFYLLVLFALLGMMVMVSANDLLTLFLGLELLSLPLYALAALR 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 159 YGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLF-MLDNNLSMLPL----IGLLIAATG-KSAQFGLHPW 232
Cdd:PRK05777  147 RDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAkALADGSGNSLLllfgLVFLLVGLAfKLSAVPFHMW 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 233 LPSAMEG-PTPVSALLHSSTMvVAGIFLLIR-----FHPLMEnnnSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFST 306
Cdd:PRK05777  227 TPDVYEGaPTPVTAFLATAPK-IAAFAVLLRllvvaFGGLSE---DWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSS 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 307 SSQLGLMMV--TMGINQPYLA-FLHICNHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGM 383
Cdd:PRK05777  303 IAHAGYLLVglAAGTAEGYSAvLFYLLAYLFMTLGAFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGI 382
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1236518600 384 PFLTGFYSKDLIIEAANTSniNAWALTITLIATSL-TAVYSTRIIFYALLGQPR 436
Cdd:PRK05777  383 PPTAGFWGKFYVFEAAVEA--GLWWLAVIGVLNSAiGAFYYLRVIKLMYFDEPP 434
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
83-436 2.76e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 85.02  E-value: 2.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  83 DYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQffkYLLMFLITMLILVT-------ANNLFQLFIGWEGVGIMSFLLI 155
Cdd:PRK12665   75 DRLSALMLVVSSVVLLAVLVYAIGQGIRDGDEEQ---PVSIFLPTYLILVAgvsnaflAGDLFNLYVGFEILLVASYVLL 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 156 GwwYGRTDANT-AALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFM----LDNNLSMLPLIGLLIAATGKSAQFGLH 230
Cdd:PRK12665  152 T--LGATAARVrAGVTYVMVSMVSSLLFLIGIALVYAATGTLNMADLAVrldeLPSGTRTALFAVLLVAFGIKAAVFPLS 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 231 PWLP-SAMEGPTPVSA----LLhssTMVvaGIFLLIRFHPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFS 305
Cdd:PRK12665  230 FWLPdSYPTAPAPVTAvfagLL---TKV--GVYAIIRTHTLLFPGGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFT 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 306 TSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGsIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTG 382
Cdd:PRK12665  305 LVSHIGYMVFGIALSTVAglsGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGG 383
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 383 MPFLTGFYSKDLIIEA-ANTSNINAWALTITLIATSLTAVYS-TRIIFYALLGQPR 436
Cdd:PRK12665  384 IPPFSGFIGKVALLEAgAEDGTWLAWALVAGGVVTSLLTLYAvARVWTKAFWRARE 439
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
204-421 4.67e-16

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 80.95  E-value: 4.67e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 204 LDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLhSSTMVVAGIFLLIRFHPLMENNNSIQT---LMLC 279
Cdd:PRK08676  200 LSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALL-SGTVLNIGIYGILRLSALLRQSGAAEQfsnVLIG 278
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 280 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQP---YLAFLHICNHAFFKAMLFMCSGsIIHNLNDEQDI 356
Cdd:PRK08676  279 LGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPlalFWMLFHMLAHSLVKSGLFFSAG-ILHRQYRSDRF 357
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518600 357 RKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAAntSNINAWALTITLIATSLTAV 421
Cdd:PRK08676  358 DRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQL--GGISVWLVLAVLLLLLLAAS 420
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
134-422 1.21e-15

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 79.74  E-value: 1.21e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 134 ANNLFQLFIGWEGVGIMSFLLIGWWyGRTDANTAALQAILYNRIGDIGFI---LTMAWfLMYSNTWEFQQLF--MLDNNL 208
Cdd:PRK06473  126 AQDLLLFFLFYELELIPLYLLIAIW-GGQRRGYAATKFLLYTAISGILILvsfLGLVW-LSGASSFDYEPLRshTLPLST 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 209 SMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLhSSTMVVAGIFLLIRF--HPLMENNNSIQTLMLCLGAITT 285
Cdd:PRK06473  204 QLLLLAPILVGFGIKIPLVPFHTWLPDAhVEASTPVSVLL-AGVLLKLGTYGLLRFgvGLFPEAWVYLAPWLATWAVVSV 282
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 286 LFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMCSGsIIHNLNDEQDIRKMGGL 362
Cdd:PRK06473  283 LYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLsilAAVFQMISHGLISALLFLLVG-VVYKKTGSRDVDVLRGL 361
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518600 363 F---KAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAanTSNINAWALTITLIATSLTAVY 422
Cdd:PRK06473  362 LnpeRGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRG--SFPIFPVQTLLCMIGTGLTAVY 422
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
200-398 6.98e-15

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 77.95  E-value: 6.98e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 200 QLFMLDNNLSMLPLIGLLIAAtgksAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFhPLMENNNSI--QTLM 277
Cdd:PRK08042  174 QQLPLGSDIWLLGVIGFGLLA----GIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTL-SLLGGNAPLwwGVAL 248
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 278 LCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMG-------INQPYLAFL-------HICNHAFFKAMLFMCS 343
Cdd:PRK08042  249 LVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGagvtgiaLEQPALIALglvgglyHLLNHSLFKSVLFLGA 328
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1236518600 344 GSIIHNlNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEA 398
Cdd:PRK08042  329 GSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQS 382
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
115-448 2.49e-13

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 72.37  E-value: 2.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 115 NQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSN 194
Cdd:PRK06277  100 GLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIVQVGLV-IASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTG 178
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 195 TWEFQQL--FMLDNNLSMLPLIGLLIAATGKSAQFGLHPW--LPSAM--EGPTPVSALLHSS---TMVVAGIFLLIRFHP 265
Cdd:PRK06277  179 TLNITDIhnALLVNPTSPVIYGGLLLLIFGLLYGSGLPPFhtIKSDIyaKAKPFGSALLQTFskfVLVALMLVIFKLFGG 258
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 266 LMENNnSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY---LAFLHICNHAFFKAMLFMC 342
Cdd:PRK06277  259 LSYFP-SAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLgivAGIFHAINHVIYKSALFLG 337
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 343 SGsIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINawALTITLIATSLTAVY 422
Cdd:PRK06277  338 AG-IVSYRTKTSNLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMP--ELAIIMIIVSIGTFV 414
                         330       340
                  ....*....|....*....|....*.
gi 1236518600 423 STRIIFYALLGQPRFISMSIINENNP 448
Cdd:PRK06277  415 SMMKAFYLIYLKPKPEELEYKNKKVP 440
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
71-422 5.46e-13

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 71.67  E-value: 5.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  71 IQTLKLTLSFKLDYFSMLFIPVALFVTWsIMEFSMWYMHADPDInqFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIM 150
Cdd:PRK07363   66 NEPLGLSYSLGVDGLSLPLLVLNSLLTW-IAIYSIGENTERPRL--YYSLILLINGGIAGALLAQNLLLFFLFYELELIP 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 151 SFLLIGWWYGRTDAnTAALQAILYNRIGdiGFILTMAW----FLMYSNTWEFQQLFM--LDNNLSMLPLIGLLIAATGKS 224
Cdd:PRK07363  143 FYLLIAIWGGEKRG-YASIKFLIYTAVS--GLLVLAAFlgivWLSGSTSFDYDAISTqnLSLNTQLILLTGLLLGFGIKI 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 225 AQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLM--ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIV 302
Cdd:PRK07363  220 PLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFGLQLfpQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMV 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 303 AFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGsIIHNLNDEQDIRKMGGLF---KAMPFTSSSLIIG 376
Cdd:PRK07363  300 AYSSIGHMGYILVAAAAGTQLSllgAVAQMISHGLILALLFHLVG-IVERKVGTRDLDVLNGLMnpiRGLPLTSALLVLA 378
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1236518600 377 SLALTGMPFLTGFYSKDLIIEAANTSNINAWALTItlIATSLTAVY 422
Cdd:PRK07363  379 GMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCI--VASGLTAVY 422
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
68-118 3.76e-12

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 61.29  E-value: 3.76e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236518600  68 WMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHADPDINQFF 118
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
74-421 5.32e-11

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 65.11  E-value: 5.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  74 LKLTLSFKLDYFSMLFIPVALFVTwSIMEFSMWYMHADPdinQFFKYLLMFLITMLILVTA-NNLFQLFIGWEGVGIMSF 152
Cdd:PRK02546   77 LGLTWSVGADGLSMPLILLTGFIT-TLAVLAAWPVTFKP---KLFYFLMLAMYGGQIAVFAvQDMLLFFLAWELELIPVY 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 153 LLIGWWYGRtDANTAALQAILYNRIGDIgFIL----TMAwFLMYSNTWEFQQLFMLD--NNLSMLPLIGLLIAATGKSAQ 226
Cdd:PRK02546  153 LLLAIWGGK-KRQYAATKFILYTAGSSL-FILlaalAMA-FYGDTPTFDMTALAAKDfgLGFQLLCYAGLLIAYGVKLPI 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 227 FGLHPWLPSAM-EGPTPVSALLhsstmvvAGIFL------LIRFHPLM--ENNNSIQTLMLCLGAITTLFTAICALTQND 297
Cdd:PRK02546  230 VPLHTWLPDAHgEATAPVHMLL-------AGILLkmggyaLLRMNAGMlpDAHAQFAPLLIVLGVVNIIYAALTSFAQRN 302
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 298 IKKIVAFSTSSQLGLMMVTMGINQPYL---AFLHICNHAFFKAMLFMCSGSI---IHNLNDEQdirkMGGLFKAMP---- 367
Cdd:PRK02546  303 LKRKIAYSSISHMGFVLIGIGSFTDLGtsgAMLQMISHGLIGASLFFLVGATydrTHTLMLDE----MGGVGQKMRkmfa 378
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1236518600 368 -FTSSSLiiGSLALTGMpflTGFYSKDLIIEAANTSniNAWALTITLIATSLTAV 421
Cdd:PRK02546  379 mWTACSL--ASLALPGM---SGFVAELMVFVGFATS--DAYTLPFRVVVVFLAAV 426
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
119-423 1.35e-10

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 63.79  E-value: 1.35e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 119 KYLLM-FLITMLIL-------VTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFL 190
Cdd:MTH00226  127 KYLTKsFLICMLILefllyavFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLY 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 191 MYSNTWEFQQL----FMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLHSSTMVVAGIFLLIRFHP 265
Cdd:MTH00226  207 NIHGTTDYLTLascsHVVSEQTQKWIFLGIFLAMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGGYGLVRLSWP 286
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 266 LME-NNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLM---MVTMGINQPYLAFLHICNHAFFKAMLFM 341
Cdd:MTH00226  287 ILPlGAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVsitLVTHDIIGLTGSIFIMLAHGIVSSLLFI 366
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 342 CSgSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIeaANTSNINAWALTITLIATSLTAV 421
Cdd:MTH00226  367 LV-TILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI--LSSFNWNPIIGVFVCSGVILSAV 443

                  ..
gi 1236518600 422 YS 423
Cdd:MTH00226  444 YS 445
ndhB CHL00049
NADH dehydrogenase subunit 2
114-468 9.88e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 58.09  E-value: 9.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 114 INQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNriGDIGFILTMAWFLMYS 193
Cdd:CHL00049  110 ITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNEATMKYLLMG--GASSSILVYGFSWLYG 187
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 194 NTWEFQQLFMLDNNLS---MLPLIGLLIAATG-------KSAQFGLHPWLPSAMEG-PTPVSALLhSSTMVVAGIFLLIR 262
Cdd:CHL00049  188 LSGGEIELQEIVNGLIntqMYNSPGISIALIFitvgigfKLSLAPFHQWTPDVYEGsPTPVVAFL-SVTSKVAASALATR 266
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 263 FHPLM--ENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFkaMLF 340
Cdd:CHL00049  267 IFDIPfyFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLF--YIF 344
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 341 MCSGS----IIHNLNDEQD-IRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNInAWALTITLIA 415
Cdd:CHL00049  345 MNLGTfaciVLFGLRTGTDnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGL-YFLVSIGLLT 423
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518600 416 TSLTAVYSTRIIFYALLGQPRFISMSIINENNPLLI--NPIKRLMI----GSIFAGFFL 468
Cdd:CHL00049  424 SVISIYYYLKIIKLLMTGRNQEITPYVRNYRRSPLRsnNSIELSMIvcviASTIPGISM 482
ndhD CHL00011
NADH dehydrogenase subunit 4
131-383 1.33e-08

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 57.65  E-value: 1.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 131 LVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDAnTAALQAILYNRIGDIGF---ILTMAWFLMYSNTWEFQQLFMLDN- 206
Cdd:CHL00011  128 LFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRL-YSATKFILYTAGGSIFLligVLGMGLYGSNEPTLNFETLANQSYp 206
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 207 -NLSMLPLIGLLIAATGKSAQFGLHPWLPSamegpTPVSAllHSST-MVVAGIFL------LIRFH-PLMENNNSI-QTL 276
Cdd:CHL00011  207 vALEILFYIGFLIAYAVKLPIIPLHTWLPD-----THGEA--HYSTcMLLAGILLkmgaygLIRINmELLPHAHSIfSPW 279
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 277 MLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMG-INQPYL--AFLHICNHAFFKAMLFMCSGSI---IHNL 350
Cdd:CHL00011  280 LVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGsITDTGLngAILQIISHGFIGAALFFLAGTSydrIRLV 359
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1236518600 351 NDEQdirkMGGLFKAMP--FTS-SSLIIGSLALTGM 383
Cdd:CHL00011  360 YLDE----MGGIAIPMPkiFTMfSSFSMASLALPGM 391
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
8-399 3.73e-08

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 56.22  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   8 MLITLIVLSLPL-MINTLNINKNMPFTL-YVKLSIACAFITSTIPT-TLFIFSGQEAIISNWHWMIIQTLKL---TLSFK 81
Cdd:MTH00204    1 NGLSLIFLILFMgIINVMGVPRENSVKLkKRALEWSLAILFSTLVLwGAFDGEGQFQFINLIEWIISPTLNFqwgPLVFA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  82 LDYFSMLF-------IPVALFVTWSIMEFsmwymhadpdinqFFKYLLMFLITMLILV----TANNLFQLFIGWEGVGIM 150
Cdd:MTH00204   81 VDGVSLFFillttllIPICILISWKSIKF-------------LFKEFLLCLLFLEVLLigvfSVLDLLLFYILFEGILIP 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 151 SFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFM--LDNNLSMLPLIGLLIAATGKSAQFG 228
Cdd:MTH00204  148 MFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNikLPLSIQKWLLVGFFLSLAVKIPQIP 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 229 LHPWLPSA-MEGPTPVSALLhsstmvvAGIFL------LIRF-HPLM-ENNNSIQTLMLCLGAITTLFTAICALTQNDIK 299
Cdd:MTH00204  228 FHIWLPQAhVEAPVAGSVIL-------AGILLklggygFLRFsWPLFpAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFK 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 300 KIVAFSTSSQLGLmmVTMGINQPYL-----AFLHICNHAFFKAMLFMCSgSIIHNLNDEQDIRKMGGLFKAMPFTSSSLI 374
Cdd:MTH00204  301 RLIAYSSVAHMGL--VPLGLFTHTIeglvaAVFLMLAHGFVSSALFIAV-TFLYERHHTRLIKYYRGLTLTMPLFVIIML 377
                         410       420
                  ....*....|....*....|....*
gi 1236518600 375 IGSLALTGMPFLTGFYSKDLIIEAA 399
Cdd:MTH00204  378 VLSLANMGFPLSCNFVGEFFSLLAA 402
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
57-319 1.10e-07

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 54.67  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  57 SGQEAIISNWHWMI-IQTLKLTLSFKLDYFSMLF-------IPVALFVTWSIMEFSmwymhadpdINQFFKYLLMFLITM 128
Cdd:MTH00217   52 EGQFQAIKKFEWIPgIEPVFGPVVFAVDGISIFFliltallTPICILISWNSIKFL---------IKEFLLCLLVIEILL 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 129 LILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIgFILtMAWFLMYSN--TWEFQQL--FML 204
Cdd:MTH00217  123 MGVFTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSV-FML-LGIFTLYSYagTTDYQALccLKI 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 205 DNNLSMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALLhsstmvvAGIFL------LIRFH-PLM-ENNNSIQT 275
Cdd:MTH00217  201 EKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAhVEAPVAGSVIL-------AGVLLklggygFIRFSwPLLpEASEYFSP 273
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1236518600 276 LMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLmmVTMGI 319
Cdd:MTH00217  274 LIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGL--VTLGI 315
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
229-397 1.13e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 54.06  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 229 LHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLirfhpLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSS 308
Cdd:MTH00112  111 FHFWLPEVLQGSTTTTALILSTWQKLAPLTLL-----LMTSNSLNPTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIA 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 309 QLGLMMVTMGINqPYLAFLhicnhAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTG 388
Cdd:MTH00112  186 HLGWMIAIITYS-PKLTLL-----TFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSLAGLPPLTG 259

                  ....*....
gi 1236518600 389 FYSKDLIIE 397
Cdd:MTH00112  260 FMPKWLILQ 268
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
68-392 1.96e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.90  E-value: 1.96e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  68 WMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYM-HADPDINQFFKYLLMFLITMLILVTANNLFQLFIGWEG 146
Cdd:PRK02504   62 WDNPNPISFLGSFNADNLSIAFRAIIALSTLVTLLMSWRYVeQSGTPLGEFAAILLTATLGGMFLSGATELVMIFISLET 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 147 VGIMSFLLIGwwYGRTDA--NTAALQAILYNRIGDIGFILTMAwfLMYSNTWEFQQL----FMLDNNLSMLPLIGLLIAA 220
Cdd:PRK02504  142 LSIASYLLTG--YMKRDPrsNEAALKYLLIGAASSAIFLYGSS--LLYGLSGGSTQLsaiaLALITSPSLGLALALVFVI 217
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 221 TG---KSAQFGLHPWLPSAMEG-PTPVSALLhSSTMVVAGIFLLIRFhplmennnsiqtLMLCLGAITT----LFTA--- 289
Cdd:PRK02504  218 AGiafKISAVPFHQWTPDVYEGsPTPVVAFL-SVGSKAAGFALAIRL------------LVTAFPSFDEqwklLFTAlai 284
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 290 -------ICALTQNDIKKIVAFSTSSQLGLMMVTM--GINQPYLAFLHicnhaFFKAMLFMCSGS----IIHNLNDEQD- 355
Cdd:PRK02504  285 lsmvlgnVVALAQTSMKRMLAYSSIGQAGFVMIGLvaGTEAGYASMVF-----YLLAYLFMNLGAfacvILFSLRTGTDq 359
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1236518600 356 IRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSK 392
Cdd:PRK02504  360 ISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
121-474 9.42e-07

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 51.12  E-value: 9.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 121 LLMFLITMLILvTANNLFQLFIGWEgVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQ 200
Cdd:MTH00200   11 LSLGLGTLLTF-SSSHWFLIWLGLE-INTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISE 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 201 LfmldnnLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNnsiqtLMLCL 280
Cdd:MTH00200   89 M------LGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSN-----ILLLL 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 281 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMginqPYLAFLHICNhaFFKAMLFMCSGSIIHNLNDEQDIRKMG 360
Cdd:MTH00200  158 GLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL----VYSPNLALLY--LLLYVIITLTVFLLLNLLNSTKINSLS 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 361 GLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIeAANTSNINAWALTITLIATSLTAVYSTRIIFYALLGQPRFISM 440
Cdd:MTH00200  232 SSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLIL-QELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQIN 310
                         330       340       350
                  ....*....|....*....|....*....|....
gi 1236518600 441 SIINENNPLLINPIKRLMIGSIFAGFFLFFNILP 474
Cdd:MTH00200  311 MMSSWRTKSNSNLLVGLLLLLSILGLPLTPQLLF 344
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
11-423 9.59e-07

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 51.48  E-value: 9.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  11 TLIVLSLPLMINTLNINKNMPFTLYVKLSIACAFitstiPTTLFIFSGQEAIISNWhwmiiqtlklTLSFKLDYFSMLFI 90
Cdd:MTH00206    1 KILIPLIMLLLMTILSKKKWLWRSTTFFSFLIAL-----LFLLWFKWSSEVGWSFS----------NLYLSYDPLSSPLV 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  91 PVALFVTWSIMEFSMWYMHADPDINQ-FFKYLLMFLITMLILV-TANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAA 168
Cdd:MTH00206   66 ILSCWLLPLMFLASQNHMKNEPINRQrIYITLLIVLQLFLILFfSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAG 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 169 LQAILYNRIGDIGFILTMAW--FLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTpvsa 245
Cdd:MTH00206  146 YYFLFYTLIGSLPLLIALLFlqNSLGSLSLYILYFSKLTTWNNNLWWLACILAFLVKLPLYGVHLWLPKAhVEAPV---- 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 246 llhSSTMVVAGIFL------LIRFHPLMEN-NNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLM----- 313
Cdd:MTH00206  222 ---AGSMVLAGVLLklggygMMRIILILGPsTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVtagil 298
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 314 -MVTMGINQPYLAFLhicNHAFFKAMLFmCSGSIIHNLNDEQDIRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSK 392
Cdd:MTH00206  299 sGSPWGFKGALLLMI---AHGLVSSALF-CLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGE 374
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1236518600 393 DLIIeaANTSNINAWALTITLIATSLTAVYS 423
Cdd:MTH00206  375 LLII--TSLFSWSNFTLPLLGLGFLFTAIYS 403
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
82-318 1.38e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 51.33  E-value: 1.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  82 LDYFSMLFIPVALFVTWsimeFSMWYMHADpdinqffKYLLMFLI----TMLILVTANNLFQLFIGWEGVGIMSFLLIGW 157
Cdd:PRK06459   46 LSFFSIISTIVWILASL----YSIEYDHYG-------KWLSSLYIltilGMAIVLTSDNYLLFLAGWEIMTIPSYVAIAL 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 158 WygrTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLfmldnnLSMLPLIGLLIAATGKSAQFGLH--PWLPS 235
Cdd:PRK06459  115 T---KKNKRPAFVFMAFGELSTVLILAGFAWAFIISGTTNFSYL------PSPVPLILASFGFIIKMGMMPFLvsEWLPI 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 236 AM-EGPTPVSALLhSSTMVVAGIFLLIRFHPLMENN--NSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGL 312
Cdd:PRK06459  186 AHgNAPSNFSAIL-SATMTLMGVYGILKMTILTQTIpiGYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGA 264

                  ....*.
gi 1236518600 313 MMVTMG 318
Cdd:PRK06459  265 ILVALG 270
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
123-476 3.29e-06

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 49.64  E-value: 3.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 123 MFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLF 202
Cdd:MTH00196    1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 203 MLDNNLS-----MLPLIGLLI--AATGKSAQFGLHPWLPSAMEG-PTPVSALLhsSTMVVAGIFLLirfhpLMENNNSIQ 274
Cdd:MTH00196   81 LVLNSGQsfssvSVPIGYLLIivALLFKLSVAPFHMWAPDVYEGaPTKTTALL--AIVPKLGIFSI-----LVSIGLNVN 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 275 TLMLcLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGIN-----QPYLAFLhicnhaFFKAMLFMCSGSIIHN 349
Cdd:MTH00196  154 ILLI-GGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfesiQASLVYL------FIYIIMSICVFSIILA 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 350 LNDEQD-IRKMGGLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALtITLIATSLTAVYSTRIIf 428
Cdd:MTH00196  227 LNVYKNlIIEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFL-LAVFCSVIAGVYYVRIV- 304
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 1236518600 429 YALLGQPRFISMSIINE-NNPLLINPIKRLMIGSIFagFFLFFNILPTN 476
Cdd:MTH00196  305 KILFFQANSFLLISTKIlKKENKINLRKALLIGFSL--YLILFTILSPN 351
PRK12664 PRK12664
putative monovalent cation/H+ antiporter subunit D; Reviewed
100-405 5.72e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237164 [Multi-domain]  Cd Length: 527  Bit Score: 49.34  E-value: 5.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 100 IMEFSMWYMHADPDINQFFKYLLMFL---ITMLILVTANNLFQLFIGWEGVGIMSFLLIGwwYGRTDANTAAlqAILYNR 176
Cdd:PRK12664   45 SFSLALIFLYILPIKNMRFSEMLCYLlyyISSIAAISSSSLTLVVIGFEFMALSALMIIA--AGCPGGNIGA--FIHYAC 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 177 IGDI-GFILTMAWFLmysntweFQQLFMLDNNLSMLPLIGLLIAAtgksAQFGLHPWLPSAMEGPTPVSALLHSSTMVVA 255
Cdd:PRK12664  121 VHFFsGVLLLVGASG-------QAQNGQYTGYCKLLFMLGLLINC----ACFPASSWVVDAYPAASNFGIIVLSLFTTKV 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 256 GIFLLIRFHplmennnSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPY-----LAFLHIC 330
Cdd:PRK12664  190 AALVLLLFF-------SGEEILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSgvaigILILQIV 262
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518600 331 NHAFFKAMLFMCSGSIIhNLNDEQDIRKMGGLFKaMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNIN 405
Cdd:PRK12664  263 LSVVYQTLLFMVADSVI-NRTRKFNLNRVGGLFK-MSLEAMCCIIAILNMGAFPGTAGFVSKSLITHSIDTAGLT 335
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
9-313 2.28e-05

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 47.28  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600   9 LITLIVLSLPLMINTLNINKNMPFTLyvklSIACAFITSTIptTLFIFSGQeaIISNWHWMIIQTLKLTLSFKLDYFSML 88
Cdd:MTH00044    1 MITLILLSLGIAITSWIVPKNKLWPI----SISQSSLISLL--SLFLLNNH--WSSSWHNLSLSLATDSLSSPLIILSCW 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  89 FIPVALFVTWSIMEFsmwymhaDPDINQ--FFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166
Cdd:MTH00044   73 LAPLSLLASINHLSN-------NSPNNQrtFISLIIIILTALIITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQ 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 167 AALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGL-----LIAATGKSAQFGLHPWLPSA-MEGP 240
Cdd:MTH00044  146 AGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSELNWLTSLSSNSSSIwwifcILAFLVKMPIYGFHLWLPKAhVEAP 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 241 TPVSallhsstMVVAGIFL------LIR-----FHPLMENNNSIQTLMLCLGAittLFTAICALTQNDIKKIVAFSTSSQ 309
Cdd:MTH00044  226 VAGS-------MILAAILLklggygLIRlinlfSLPSANNISFILIVFCCWGA---LITSIICLRQTDLKALIAYSSVGH 295

                  ....
gi 1236518600 310 LGLM 313
Cdd:MTH00044  296 MSLV 299
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
201-477 2.99e-05

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 46.42  E-value: 2.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 201 LFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPlmenNNSIQTLMLCL 280
Cdd:MTH00144   75 LIMYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLD----LYWLAYLLCVI 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 281 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQPYLAFLHICNHAFFKAMLFMCSGSIIHNLndeqdirKMG 360
Cdd:MTH00144  151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-------KDL 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 361 GLFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAanTSNINAWALTITLIATSLTAVYstriiFYAllgqpRFISM 440
Cdd:MTH00144  224 GSLKPSYKTGLSIISLLLSLGGLPPFLGFCSKLLVLIS--SMESSPLLLILLLLLGSLISLF-----FYL-----SVFFS 291
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1236518600 441 SIINENNPLLINPIKRLMIGSIFAGFFLFFNILPTNI 477
Cdd:MTH00144  292 SFLSSSKSKKSNSSKVLNSSIISLNLLGGLLFLLLYL 328
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
202-422 6.25e-05

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 45.31  E-value: 6.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 202 FMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFhplmeNNNSIQTLMLCLG 281
Cdd:MTH00041   84 WSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISI-----SNLLNSNILILCG 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 282 AITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINqPYLAFLHICNHAFFKAMLFmcsgsIIHNLNDEQDIRKMGG 361
Cdd:MTH00041  159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYS-PNASIIMFLIYIIINTSIF-----LIGNNFSLSTLSHLNK 232
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518600 362 LFKAMPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEaaNTSNINAWALTITLIATSLTAVY 422
Cdd:MTH00041  233 LSQLNPISAFLFILSILSLGGLPPLTGFLNKFISLY--CLIQNNSILISIILIIGSLLSLF 291
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
75-317 1.13e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 44.76  E-value: 1.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  75 KLTLSFKLDYFSMLFIPVALFVTwSIMEFSMWYMHADPDINQFFKYLLMFLITMLILV-TANNLFQLFIGWEGVGIMSFL 153
Cdd:MTH00163   47 NISYFFGLDLLSFGLILLSFWIC-MLMILSSESVYKKNNYSNLFLFLILFLLIFLLLTfSSMNLLLFYIFFESSLIPTLF 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 154 LIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATgKSAQFGLHPWL 233
Cdd:MTH00163  126 LILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLV-KMPMFFVHLWL 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 234 PSA-MEGPTpvsallhSSTMVVAGIFL------LIRFHPLMEN-NNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFS 305
Cdd:MTH00163  205 PKAhVEAPV-------SGSMILAGVLLklggygLLRVMSFFSKlGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYS 277
                         250
                  ....*....|..
gi 1236518600 306 TSSQLGLMMVTM 317
Cdd:MTH00163  278 SVAHMGLVLGGL 289
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
230-481 1.78e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 44.24  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 230 HPWLPSAMEG-PTPVSALLhsSTMVVAGIFLLirfhpLMENNNSIQTLMLClGAITTLFTAICALTQNDIKKIVAFSTSS 308
Cdd:MTH00199  210 HMWAPDVYEGaPTITTALL--ATVPKIGVFSI-----LVQIGPVTNVVLIC-AVLSIIYGAIGALNQTKIKRLLAYSGIG 281
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 309 QLGLMMVTMGIN-----QPYLAFLHIcnhaffKAMLFMCSGSIIHNLNDEQD-IRKMGGLFKAMPFTSSSLIIGSLALTG 382
Cdd:MTH00199  282 HMGFILFGVAIGsfesiQASLIYMII------YVIMSICSFSIILSLKLTKGlIVEVSGLSRKNPVIALTLALTFLSIAG 355
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 383 MPFLTGFYSKDLIIEAANTSniNAWALTITLIATSLTA-VYSTRI--IFYALLGQPRFISMSIINENNPLLINpiKRLMI 459
Cdd:MTH00199  356 IPPLAGFLSKWLILLSGVSS--GYYLICIIAVLSSVIAgVYYVRVvqIIYFQADYSILIWQKVLKKEERLDLS--KSILI 431
                         250       260
                  ....*....|....*....|..
gi 1236518600 460 GsIFAGFFLFFNILPTNIPQMT 481
Cdd:MTH00199  432 G-VTFFIILFLMISPNFLLQIT 452
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
206-415 2.41e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 43.76  E-value: 2.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 206 NNLSMLPLIGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNnsiqtLMLCLGAITT 285
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSN-----LLIIMGLLST 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 286 LFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINqPYLAFLHICNHAFFKAMLFMcsgsIIHNLNdEQDIRKMGGLFKA 365
Cdd:MTH00070  163 LIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFS-PHLTLLNLLIYLIMTSSMFL----MLMNLN-STNINKLSSSWSK 236
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1236518600 366 MPFTSSSLIIGSLALTGMPFLTGFYSKDLIIEAANTSNINAWALTITLIA 415
Cdd:MTH00070  237 NPTLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSA 286
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
115-313 7.45e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 42.13  E-value: 7.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 115 NQFFKYLLMFLITMLILVTA---NNLFQLFIGWEGVGIMSFLLIGWWYGRTDAntaaLQAILYNRIGDIG------FILT 185
Cdd:MTH00150   52 NKSSSFSLLVLLLCLILVLAfsvSSLLMFYFFFEASLIPTLLLILGWGYQPER----LQAGMYMMLYTVGaslpllLVIL 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 186 MAWFLMYSNTWEFQQLFMLDNNLSMLPLIGLLIAATGKSAQFGLHPWLPSA-MEGPTpvsallhSSTMVVAGIFL----- 259
Cdd:MTH00150  128 WMSSSYGSSFMLLISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHLWLPKAhVEAPV-------AGSMILAGILLklggy 200
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518600 260 -LIRFHPLME-NNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLM 313
Cdd:MTH00150  201 gILRMMMVFSlSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLV 256
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
32-321 1.29e-03

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 41.65  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600  32 FTLYVKLSIACAFITSTIPTTLFIFSgqEAIISNWHWMIIQTLKLTLSFKLDYFSMLFIPVALFVTWSIMEFSMWYMHAD 111
Cdd:MTH00014    9 ISLLLLPLIKYPWSWALTFSTLLLLS--LFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILASFKIFQNN 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 112 PDINQFFKYLLMFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILTMAWFLM 191
Cdd:MTH00014   87 KAPKTFMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFY 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518600 192 YSNTWefqQLFMLDNNLSMLPLIGL-----LIAATGKSAQFGLHPWLPSA-MEGPTpvsallhSSTMVVAGIFL------ 259
Cdd:MTH00014  167 TNNSL---SMLMSSMEPPSIYLMNLwwlitILAFMVKMPLYTVHLWLPKAhVEAPV-------AGSMILAGILLklggyg 236
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518600 260 LIRF-HPLMENNNSIQTLMLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTMGINQ 321
Cdd:MTH00014  237 LLRMsSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNT 299
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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