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Conserved domains on  [gi|1236518591|ref|YP_009414261|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Microcebus margotmarshae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475899)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236518591 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236518591 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 6.19e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.89  E-value: 6.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLS---IIPILTKNPkpRSTEAATKYFLTQATASMLLMF----------TI 74
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSlyvLVAFRRDDR--RSSEAALKYFLLGALSSGFLLYgisllygatgSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  75 VFNAMHSGqwtITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQM 147
Cdd:COG1007   184 NLAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEA 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 148 FPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITMFTM 220
Cdd:COG1007   261 FPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 221 LNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFY 295
Cdd:COG1007   341 ILLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420


                  ....*
gi 1236518591 296 MRLIY 300
Cdd:COG1007   421 LRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 2.10e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  77 NAMHSGQWTITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 152 --NHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 222 --NMNMNTTTLTLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-270 8.74e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  23 SSHWLLIWIGLEINMLSIIPILTKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  93 NMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNILMLIALLSILA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWS 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236518591 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-349 6.80e-156

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 440.82  E-value: 6.80e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00105   81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00105  159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00105  239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318

                         330       340
                  ....*....|....*....|....*....
gi 1236518591 321 LKKQSLLLSPLIILSTLSLPLSPMFSTLN 349
Cdd:MTH00105  319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-348 4.59e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 347.56  E-value: 4.59e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSiNHNILMLIA 160
Cdd:MTH00135   81 TGQWDIQQM--SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00135  158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAP 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00135  238 ALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317

                         330       340
                  ....*....|....*....|....*...
gi 1236518591 321 LKKQSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00135  318 STQLTLPLAISTTATLMLLPLTPAILAL 345
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 3.17e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 322.64  E-value: 3.17e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMDSNNMLISFTmiIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLT--IALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00070  159 LLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00070  239 TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318

                         330       340
                  ....*....|....*....|...
gi 1236518591 321 LKKqSLLLSPLIILSTLSLPLSP 343
Cdd:MTH00070  319 NKT-NNLLSLTIILSLMLLPITP 340
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-348 3.84e-108

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 319.85  E-value: 3.84e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMdsNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00112   81 TGQWDITQL--TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLA 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00112  159 ILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00112  239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318

                         330       340
                  ....*....|....*....|....*...
gi 1236518591 321 lKKQSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00112  319 -PKKNTLTATLTTLSTLLLPLSPMILTI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-348 1.55e-79

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 246.80  E-value: 1.55e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNMDSNNMLISFTMiiALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILL--ALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00200  159 LLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNP 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRFK 320
Cdd:MTH00200  239 ILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK 318

                         330       340
                  ....*....|....*....|....*...
gi 1236518591 321 LKKqSLLLSPLIILSTLSLPLSPMFSTL 348
Cdd:MTH00200  319 SNS-NLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-309 2.09e-77

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 241.37  E-value: 2.09e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00041    1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTItnMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00041   81 SGSWSI--NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00041  159 ILSVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNP 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPT 309
Cdd:MTH00041  239 ISAFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.17e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 168.46  E-value: 2.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 sgqwtitNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsiNHNILMLIA 160
Cdd:MTH00160   81 -------NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIII 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00160  151 ILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSK 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFptpNNIKMKWRFK 320
Cdd:MTH00160  231 KIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKK 307

                         330       340
                  ....*....|....*....|....*
gi 1236518591 321 LKKQSLLLSPLIILSTLSLPLSPMF 345
Cdd:MTH00160  308 KNKFSLILNFLSFISLFGLILSSLL 332
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-321 1.73e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 160.82  E-value: 1.73e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVfnamh 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSL----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 sgqwtITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH-NILMLI 159
Cdd:MTH00144   76 -----IMYNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 160 ALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLwSKS 239
Cdd:MTH00144  151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPS 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 240 PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSLTLFPTPNNIKMKWRF 319
Cdd:MTH00144  230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309


                  ..
gi 1236518591 320 KL 321
Cdd:MTH00144  310 SS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-301 2.86e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.86e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   1 MKPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00011    3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  81 SGQWTITNmdsnnmliSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIA 160
Cdd:MTH00011   83 PSLLKNIT--------ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 161 LLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSP 240
Cdd:MTH00011  155 AMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQ 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518591 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYS 301
Cdd:MTH00011  235 TTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-302 1.82e-35

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 131.33  E-value: 1.82e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFtivfnamhsGQWTI 86
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM---------GGSLS 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  87 TNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIsiMIQMFPSINHNILMLIALLSILA 166
Cdd:MTH00197   72 FSNLYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLI 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMNMNTTTLTLSNLWSKSPTITTMI 246
Cdd:MTH00197  150 GGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFL 229

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518591 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYST 302
Cdd:MTH00197  230 GLSFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-300 6.19e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.89  E-value: 6.19e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLS---IIPILTKNPkpRSTEAATKYFLTQATASMLLMF----------TI 74
Cdd:COG1007   106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSlyvLVAFRRDDR--RSSEAALKYFLLGALSSGFLLYgisllygatgSL 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  75 VFNAMHSGqwtITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIS----IMIQM 147
Cdd:COG1007   184 NLAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEA 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 148 FPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITMFTM 220
Cdd:COG1007   261 FPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAV 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 221 LNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFY 295
Cdd:COG1007   341 ILLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYY 420


                  ....*
gi 1236518591 296 MRLIY 300
Cdd:COG1007   421 LRVVK 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-324 8.30e-26

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 107.41  E-value: 8.30e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   4 PILMIImmtIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSG 82
Cdd:MTH00199  100 PILILI---VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  83 QwtiTNMDSNNMLIS-----FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnILM 157
Cdd:MTH00199  177 E---TSIQGINSILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVL 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 158 LIALLSILAGGWGGLNQTQLRKILAYSSIAHMG---WMMTILMFCP-SMTMLNLFIYLMLTITMFTMLnMNMNTTT---L 230
Cdd:MTH00199  252 ICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSII-LSLKLTKgliV 330

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 231 TLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIystSLTLFPTP 310
Cdd:MTH00199  331 EVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQAD 407

                         330
                  ....*....|....
gi 1236518591 311 NNIkMKWRFKLKKQ 324
Cdd:MTH00199  408 YSI-LIWQKVLKKE 420
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-299 2.10e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.19  E-value: 2.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   8 IIMMTIFTGTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  77 NAMHSGQWTITNMDSNNMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 152 --NHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITM----FTML---- 221
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgaFGVLsllr 345

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 222 --NMNMNTTTLTLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:TIGR01770 346 syKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-270 8.74e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.92  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  23 SSHWLLIWIGLEINMLSIIPILTKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNMD---------SN 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  93 NMLISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPSIN-----HNILMLIALLSILA 166
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML---------NMNMNTTTLTLSNLWS 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1236518591 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-299 2.79e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.95  E-value: 2.79e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  16 GTMLTMISSHWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF--TIVFNAMHSGQWTITNMDSN 92
Cdd:MTH00196    5 GILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFgcALLCGTTGGLHLSYINLVLN 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  93 NMLI---------SFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINhnILMLIALLS 163
Cdd:MTH00196   85 SGQSfssvsvpigYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGGLFS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 164 ILAGGWGGLNQTQLRKILAYSSIAHMG---WMMTILMF-CPSMTMLNLFIYLMLTITMFTM-LNMNMNTTTLT-LSNLWS 237
Cdd:MTH00196  163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIiLALNVYKNLIIeFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518591 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLI 299
Cdd:MTH00196  243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
4-299 8.82e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.66  E-value: 8.82e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   4 PILMIIMmtifTGTMLTMISS-HWLLIWIGLEINMLSI-IPILTKNPKPRSTEAATKYFLTQATASMLLMF--------- 72
Cdd:PRK05777  106 YLLVLFA----LLGMMVMVSAnDLLTLFLGLELLSLPLyALAALRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygat 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  73 -TIVFNAMHSgqwTITNMDSNNMLISFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK05777  182 gSLSFAGIAK---ALADGSGNSLLLLFGlvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLL 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 149 -------PSINHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSM----TMLNLFIYLMLTITM 217
Cdd:PRK05777  259 vvafgglSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGA 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 218 FTMLNM----NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNL 292
Cdd:PRK05777  339 FGVISLlrrkGGEAESISdFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGA 418


                  ....*..
gi 1236518591 293 YFYMRLI 299
Cdd:PRK05777  419 FYYLRVI 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 15-303 2.13e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 2.13e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  15 TGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM----- 89
Cdd:COG0651   118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarla 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  90 --DSNNMLISFTMI-IALTMKLGMAPFHFWVPEV----TQGVS-LMTGMLLltwqKLAPISIM---IQMFPSIN----HN 154
Cdd:COG0651   198 elDPGLLLAAFALLlVGFGIKAALFPLHFWLPDAypaaPSPVSaLLSGLLT----KVGVYAILrvlTLLFGADPalflGT 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYL---MLTITMFTMLNMNMNTTTLT 231
Cdd:COG0651   274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhALAKALLFLAAGAIERATGT 353

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518591 232 -----LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTS 303
Cdd:COG0651   354 rdldkLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-193 2.50e-12

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 67.96  E-value: 2.50e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  16 GTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRST---------EAATKYFLTQATASMLLMFTIVF---------- 76
Cdd:MTH00198  200 GGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALyfgftgnegm 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  77 -NAMHSGQWTITNMDSNNMLISFTMI-IALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpsINHN 154
Cdd:MTH00198  280 lGTILSATLETTNIELRQGSLGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV--ITSK 357

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1236518591 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:MTH00198  358 LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
7-299 5.97e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 63.53  E-value: 5.97e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   7 MIIMMTIFTGTMLTMISSHWLLIWIGLEinMLSIIP-ILTKNPK--PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ 83
Cdd:PRK02504  113 AAILLTATLGGMFLSGATELVMIFISLE--TLSIASyLLTGYMKrdPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGG 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  84 WT--------ITNMDSNNMLISFTMIIA-LTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLA----PISIMIQMFPS 150
Cdd:PRK02504  191 STqlsaialaLITSPSLGLALALVFVIAgIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPS 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 151 IN---HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMtILMFCP-----SMTMLNLFIYLMLTITMFTMLN 222
Cdd:PRK02504  271 FDeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVI 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 223 M-NMNTTTLTLSN---LWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRL 298
Cdd:PRK02504  350 LfSLRTGTDQISDyagLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429


                  .
gi 1236518591 299 I 299
Cdd:PRK02504  430 I 430
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 55-193 6.55e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.18  E-value: 6.55e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  55 AATKYFLTQATASMLLMFTIVFNAMHSGQWTI-------TNMDSN-NMLISFTMIIALTMKLGMAPFHFWVPEV-----T 121
Cdd:COG1008   162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTFdiaelaaAPLPLTaQLLLFLAFFIAFAVKVPMFPFHTWLPDAhveapT 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518591 122 QGVSLMTGMLLltwqKLAP---ISIMIQMFPSINH---NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:COG1008   242 AGSVLLAGVLL----KMGGyglLRFALPLFPEASAyfaPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL 315
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 55-193 2.62e-09

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 58.29  E-value: 2.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  55 AATKYFL-TQAT-----ASMLLMFTIVFNAMHS---GQWTITNMDSN-NMLISFTMIIALTMKLGMAPFHFWVPEV---- 120
Cdd:PRK05846  162 AATKFFLyTLLGsllmlVAIIYLVVVYYNATGTfdiADLLNLPLPPGvQYWLFLAFFIAFAVKMPMFPLHTWLPDAhvqa 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 121 -TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILA---GGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK05846  242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 7.63e-09

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 56.96  E-value: 7.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   2 KPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK12561   85 KPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSG 164

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  82 GQWT--ITNMDSNNMLISFTM------IIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK12561  165 DTFTfdLAELGAKSYPLALELllyagfLIAFGVKLPIFPLHTWLPdahgEASAPVSMILAGVLLKMGGYALIRFNVQMLP 244

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1236518591 150 SINHNILMLIALLSILAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK12561  245 DAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-193 1.78e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 55.78  E-value: 1.78e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  51 RSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ----WTITN-MDSNNMLISFTMIIALT-------MKLGMAPFHFWVP 118
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGeielQEIVNgLINTQMYNSPGISIALIfitvgigFKLSLAPFHQWTP 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 119 EVTQGVSLMTGMLLLTWQKLAPISIMIQM----FPSIN---HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGW 191
Cdd:CHL00049  239 DVYEGSPTPVVAFLSVTSKVAASALATRIfdipFYFSSnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318


                  ..
gi 1236518591 192 MM 193
Cdd:CHL00049  319 VI 320
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 6-193 2.93e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.95  E-value: 2.93e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   6 LMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNA-MHSGQW 84
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTF 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  85 TITNMDSNNMLISFTMI------IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIM---IQMFPS 150
Cdd:TIGR01972 188 DLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPD 263

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1236518591 151 ---INHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:TIGR01972 264 aslYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 5.21e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 5.21e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  33 LEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGqwTITNMDSNNML--------ISFTMIIAL 104
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG--TLNMADLAGALaenptvvtAFGFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 105 TMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP------SINHNILMLIALLSILAGGWGGLNQ 174
Cdd:PRK08375  213 ALKAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfaLGLGWLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 175 TQLRKILAYSSIAHMGWMMT-ILMFCPSM---TMLNLFIYLMLTITMFT---MLNMNMNTTTLT-LSNLWSKSPTITTMI 246
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLgLALLTPLAlaaGLLHLLHHALMKGALFLaagAIEVTYGTRRLSeLSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1236518591 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIY 300
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-193 2.44e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.94  E-value: 2.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  33 LEINML-SIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIvfnAMHSGQWTITNMDSNNMLISFTM----------- 100
Cdd:PRK08376  150 LEIMSIaSYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPtvvakialalf 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 101 IIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQ----KLAPISIMIqMFPSINHN----ILMLIALLSILAGGWGG 171
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSI-YGPAINLAtvgwVIIILGCLTMFVGVAMA 305

                         170       180
                  ....*....|....*....|..
gi 1236518591 172 LNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08376  306 VVQKDVKRLLAYHSVSQIGYML 327
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-301 4.87e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.27  E-value: 4.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  17 TMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMF---TIVFNAMHSGQWTITNMDSNN 93
Cdd:PRK06589  129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFVSGGLFSKN 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  94 M-LISFTMIIALTMKLGMAPFHFWVPE-----------------VTQGVSLMTGMLLLTWqKLAPISIMIQMFpsinhNI 155
Cdd:PRK06589  209 QsIILLLMFIYGIAKTAIFPVHSWLPAamvahypvsallhavivVKTGLFCIYKILLYIF-GLSYLQRIFAEF-----NW 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 156 LMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGW-MMTILMFCP---SMTMLNLFIYLMLTITMF-TMLNMNMNTTTL 230
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLaLLSAFILTPkalGAAILHLVSHSFAKICLFySMGSIYSLKKED 362

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518591 231 TLSNLWSKS---PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIV----ALLNLYFYMRLIYS 301
Cdd:PRK06589  363 QVDKLHGTSksfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSS 440
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-288 9.04e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 47.45  E-value: 9.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  82 GQWTITNMDSNNM--LISFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSIN-----HN 154
Cdd:MTH00207  165 GHWSITNMWQTDMnnYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSstywfNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 155 ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILmfcpSMTMLNLFIYLMLTITMF---------TMLNMNM 225
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL----GLGMPKLALFHLITHALFkallfvcagSLIHSHH 320

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236518591 226 NTTTL-TLSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVA 288
Cdd:MTH00207  321 HSQDLrTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLA 384
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 293-343 1.73e-05

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 41.47  E-value: 1.73e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1236518591 293 YFYMRLIYSTSLTLFPTPNNIKMKWRFKLKKQSLLLSPLIILSTLSLPLSP 343
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 102-213 2.70e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 45.81  E-value: 2.70e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILAGGWGGLN 173
Cdd:MTH00217  214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGygfIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLT 289

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1236518591 174 ---QTQLRKILAYSSIAHMGwMMTILMFCPSMTMLNLFIYLML 213
Cdd:MTH00217  290 tcrQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLML 331
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 10-192 3.35e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 3.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  10 MMTIFTGTM-LTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFL------TQATASMLLMFTIVFNAMHSG 82
Cdd:PRK06458  113 MYQLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  83 Q----WTITN-----MDSNNMLISFTMI-IALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMF 148
Cdd:PRK06458  193 EmailWTELLkhaslLDPTLMKLAFVFLlIGFGTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRYYILID 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1236518591 149 PSINH----NILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWM 192
Cdd:PRK06458  273 AAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 49-301 4.72e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 44.96  E-value: 4.72e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  49 KPRSTEAATKYFLTQATASMLLMFTIVF--------------NAMHSGQWTITNMDSNNMLISFTMIIAL-----TMKLG 109
Cdd:PRK12667  159 RGDAVEAAIKYALIGAVGTTLYFLALAFlyatfgtlnmadlsAKIRGLSFPLTGGLAGNPPLALGVALALalwafTIKAA 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 110 MAPFHFWVPEV----TQGVSLMTGMLLLTWQKLAPISIMIQMFPSINH---------NILMLIALLSILAGGWGGLNQTQ 176
Cdd:PRK12667  239 IFPNHFWLPDAhpaaPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSlidfraalsPILIILGAVSAIIGALMMVVQKD 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 177 LRKILAYSSIAHMGW-MMTILMFCPsmtmlnlfiyLMLTITMFTMLNMNMNTTTLTLSN-----------------LWSK 238
Cdd:PRK12667  319 VKRLLAYSTISHMGYiFMGIGIGTQ----------LGLAAALFHIINHAIAKSLLFLASgvfihaagtrdidelagLGRK 388

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1236518591 239 SPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYS 301
Cdd:PRK12667  389 MPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-194 6.85e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.36  E-value: 6.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  17 TMLTMISSHWLLIWIGLEIN-MLSIIPILTKNPKpRSTEAATKYFLTQATA------SMLLMFTIVFNAMHSG--QWT-- 85
Cdd:PRK08676  115 ITFAFFSDNLALFWIFAELTtVFSAMLIAILSAR-ENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGtlNWTel 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  86 ---ITNMDSNNMLISFT-MIIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQKLAPISImIQMFP--------SIN 152
Cdd:PRK08676  194 aahASLLSPSVLGASFLfIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGI-LRLSAllrqsgaaEQF 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1236518591 153 HNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMT 194
Cdd:PRK08676  273 SNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
91-193 9.48e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.92  E-value: 9.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  91 SNNMLISFTMIIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNI---LMLIALLS 163
Cdd:PRK06473  202 STQLLLLAPILVGFGIKIPLVPFHTWLPdahvEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLapwLATWAVVS 281

                          90       100       110
                  ....*....|....*....|....*....|
gi 1236518591 164 ILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK06473  282 VLYGASCAIAQKDMKKMVAYSSIGHMGYIL 311
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
85-193 1.51e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.55  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  85 TITNMDSNNMLISFTMI-IALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNI---L 156
Cdd:PRK07363  195 STQNLSLNTQLILLTGLlLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVapgL 274

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1236518591 157 MLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK07363  275 AIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYIL 311
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 102-213 3.68e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 42.36  E-value: 3.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPSINHNILMLIALLSILAGGWGGL- 172
Cdd:MTH00204  217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGygfLRFSWPLFPAASEYFAPLIVMLSVIAVIYGSLt 292

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1236518591 173 --NQTQLRKILAYSSIAHMGwMMTILMFCPSMTMLNLFIYLML 213
Cdd:MTH00204  293 tcRQVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLML 334
ND2 MTH00091
NADH dehydrogenase subunit 2; Provisional
 98-224 5.36e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177154  Cd Length: 273  Bit Score: 41.01  E-value: 5.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  98 FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPSINHNILMLIALLSILAggwgGLNQTQL 177
Cdd:MTH00091   61 YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSY 136

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1236518591 178 RKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTMLNMN 224
Cdd:MTH00091  137 KNLLILSSTESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNV 183
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
94-298 7.92e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 7.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  94 MLISFTMIIALTMKLGMAPFhFWVPEVTQ----GVSLMTGMLLLTWQKLAPISIMIQMFP---SINHNILMLIALLSILA 166
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHtpntEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 167 GGWGGLNQTQLRKILAYSSIAHMGWMMTILMFCPSMTMLNLFIYLMLTITMFTML--------NMNMNTTTLTLSNLWSK 238
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALfliagslvRLTGYRSLQYLGGLYRK 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 239 SPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRL 298
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRI 425
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 2-193 1.13e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.85  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591   2 KPPILMIIMMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK02546  113 KPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  82 GQWT--ITNMDSNNMLISFTM------IIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK02546  193 DTPTfdMTALAAKDFGLGFQLlcyaglLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMLP 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1236518591 150 SINHN---ILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK02546  273 DAHAQfapLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVL 319
ndhD CHL00011
NADH dehydrogenase subunit 4
 55-193 1.48e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 40.31  E-value: 1.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  55 AATKYFLTQATASM-LLMFTIVFNAMHSGQWTITNMDSNN--------MLISFTMIIALTMKLGMAPFHFWVPEVTQGVS 125
Cdd:CHL00011  163 SATKFILYTAGGSIfLLIGVLGMGLYGSNEPTLNFETLANqsypvaleILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAH 242

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518591 126 LMTGMLL----LTWQKLAPISIMIQMFP---SINHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:CHL00011  243 YSTCMLLagilLKMGAYGLIRINMELLPhahSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 11-302 1.72e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 40.14  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  11 MTIFTGTMLTM-ISSHWLLIWIGLEI-NMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITN 88
Cdd:COG1009   117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSE 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  89 MDSN-NMLISFTMIIALTM--------KLGMAPFHFWVPE-----------------VTQGVSLMTgmllltwqKLAPIS 142
Cdd:COG1009   197 LLAAaPTILSSPLLTLILLllllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPLF 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 143 IMIQMFpsinHNILMLIALLSILAGGWGGLNQTQLRKILAYSSIAHMGWMMTILmfcpSMTMLNLFIYLMLTITMF-TML 221
Cdd:COG1009   269 ALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkALL 340

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 222 NM-------NMNTTTLT-LSNLWSKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQEL--TKNNNIIVATVMAIVALLN 291
Cdd:COG1009   341 FLgagsvihATGTRDIRkMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAAleAGGLGPLLLAVALLGAFLT 420

                         330
                  ....*....|.
gi 1236518591 292 LYFYMRLIYST 302
Cdd:COG1009   421 AFYSFRLFFLV 431
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
29-304 2.93e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591  29 IWIGLEINMLSIIPILTKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNM------DSNNMLI---SFT 99
Cdd:PRK06277  125 LYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIhnallvNPTSPVIyggLLL 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 100 MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFP--------SINHNILMLIALLSILAGGWGG 171
Cdd:PRK06277  205 LIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKlfgglsyfPSAQGVLIALSVLAMVFGVVMA 284

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518591 172 LNQTQLRKILAYSSIAHMGWMMTILMFCPSMTM-------LNLFIYL-MLTITMFTMLNMNMNTTTLTLSNLWSKSPTIT 243
Cdd:PRK06277  285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVA 364

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518591 244 TMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATVMAIVALLNLYFYMRLIYSTSL 304
Cdd:PRK06277  365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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