|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-349 |
4.95e-156 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 441.21 E-value: 4.95e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITNIdsNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIA 160
Cdd:MTH00105 81 SGQWTITKL--TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00105 159 ILSILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQFQ 320
Cdd:MTH00105 239 LMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFE 318
|
330 340
....*....|....*....|....*....
gi 1236518577 321 LKKRPLLLSPLIILSTLSLPLSPVFSTLN 349
Cdd:MTH00105 319 NTKPMTLLPTLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-348 |
9.38e-114 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 334.08 E-value: 9.38e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITNIdsNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLiNLNTLMLIA 160
Cdd:MTH00135 81 TGQWDIQQM--SHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00135 158 LTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQFQ 320
Cdd:MTH00135 238 ALTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP 317
|
330 340
....*....|....*....|....*...
gi 1236518577 321 LKKRPLLLSPLIILSTLSLPLSPVFSTL 348
Cdd:MTH00135 318 STQLTLPLAISTTATLMLLPLTPAILAL 345
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
2.23e-107 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 317.63 E-value: 2.23e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITNIDSNnmLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIA 160
Cdd:MTH00070 81 TGEWTIMNMQTP--LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00070 159 LLSTLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQFQ 320
Cdd:MTH00070 239 TLTSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFK 318
|
330 340
....*....|....*....|...
gi 1236518577 321 LKKrPLLLSPLIILSTLSLPLSP 343
Cdd:MTH00070 319 NKT-NNLLSLTIILSLMLLPITP 340
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-348 |
6.40e-106 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 314.07 E-value: 6.40e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITNIdsNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIA 160
Cdd:MTH00112 81 TGQWDITQL--TNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00112 159 ILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQFQ 320
Cdd:MTH00112 239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTK 318
|
330 340
....*....|....*....|....*...
gi 1236518577 321 LKKRPLLLSPLIILSTLsLPLSPVFSTL 348
Cdd:MTH00112 319 PKKNTLTATLTTLSTLL-LPLSPMILTI 345
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-348 |
1.22e-77 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 241.80 E-value: 1.22e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITniDSNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIA 160
Cdd:MTH00200 81 SGQWGIS--EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00200 159 LLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQFQ 320
Cdd:MTH00200 239 ILSMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTK 318
|
330 340
....*....|....*....|....*...
gi 1236518577 321 LKKrPLLLSPLIILSTLSLPLSPVFSTL 348
Cdd:MTH00200 319 SNS-NLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
5-309 |
1.90e-77 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 241.37 E-value: 1.90e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 5 ILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQW 84
Cdd:MTH00041 5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 85 TItnIDSNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIALLSV 164
Cdd:MTH00041 85 SI--NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 165 LAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSPTITT 244
Cdd:MTH00041 163 LVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAF 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1236518577 245 MILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPT 309
Cdd:MTH00041 243 LFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
4.57e-49 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 167.69 E-value: 4.57e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMh 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 sgqwtitNIDSNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFpliNLNTLMLIA 160
Cdd:MTH00160 81 -------NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIII 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00160 151 ILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSK 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFptpNNIKMKWQFQ 320
Cdd:MTH00160 231 KIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY---NKNKWNLKKK 307
|
330 340
....*....|....*....|....*
gi 1236518577 321 LKKRPLLLSPLIILSTLSLPLSPVF 345
Cdd:MTH00160 308 KNKFSLILNFLSFISLFGLILSSLL 332
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-317 |
7.87e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 164.29 E-value: 7.87e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00144 1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWtitnidsnnmLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINL-NTLMLI 159
Cdd:MTH00144 81 SFSW----------FSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVI 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 160 ALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLwNKS 239
Cdd:MTH00144 151 SVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPS 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518577 240 PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKW 317
Cdd:MTH00144 230 YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKV 307
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-301 |
1.21e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 153.40 E-value: 1.21e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 1 MKPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMH 80
Cdd:MTH00011 3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 81 SGQWTITnidsnnmlTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIA 160
Cdd:MTH00011 83 PSLLKNI--------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 161 LLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSP 240
Cdd:MTH00011 155 AMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQ 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1236518577 241 TITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYS 301
Cdd:MTH00011 235 TTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFN 295
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
12-319 |
1.35e-34 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 129.02 E-value: 1.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 12 TIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFtivfnamhsGQWTITNIDS 91
Cdd:MTH00197 6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLM---------GGSLSFSNLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 92 NNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPIsiMIQMFPLINLNTLMLIALLSVLAGGWGG 171
Cdd:MTH00197 77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPL--LILAFNSSSFMGLLICSVLSSLIGGIGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 172 LNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTMLNMYMNTTTLTLSNLWNKSPTITTMILVSLL 251
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1236518577 252 SLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQF 319
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLL 302
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
4-324 |
1.79e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 112.03 E-value: 1.79e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 4 PILLIIVMTiftGTMLTMISSHWLLIWIGLEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSG 82
Cdd:MTH00199 100 PILILIVAL---GSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 83 QwtiTNIDSNNMLTS-----FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLntLM 157
Cdd:MTH00199 177 E---TSIQGINSILTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNV--VL 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 158 LIALLSVLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMFCP-SMTMLNLFIYLMLTITMFTMLNMYMNTTTLT-- 231
Cdd:MTH00199 252 ICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGfilFGVAIGSFESiQASLIYMIIYVIMSICSFSIILSLKLTKGLIve 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 232 LSNLWNKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIystSLTSFPTPN 311
Cdd:MTH00199 332 VSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVV---QIIYFQADY 408
|
330
....*....|...
gi 1236518577 312 NIkMKWQFQLKKR 324
Cdd:MTH00199 409 SI-LIWQKVLKKE 420
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-299 |
3.57e-24 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 102.72 E-value: 3.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 8 IIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMF----------TIVF 76
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 77 NAMHSGQWTITNIDSNNMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLI----- 151
Cdd:TIGR01770 186 EDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLFLYIlfgfs 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 152 --NLNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITM-------FTMLN 222
Cdd:TIGR01770 266 eaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMslgafgvLSLLR 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 223 MYMNTTTLTLSNLWN---KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLI 299
Cdd:TIGR01770 346 SYKDEWIEYISDFAGlfkTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-300 |
7.63e-24 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 101.73 E-value: 7.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 8 IIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIpILA--KNPKPRSTEAATKYFLTQATASMLLMF----------TIV 75
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLY-VLVafRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgSLN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 76 FNAMHSGqwtITNIDSNNMLTSFT---MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMF--PL 150
Cdd:COG1007 185 LAGIAAA---LAAGGANSPLLLLGlvlVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLLveAF 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 151 INLNT-----LMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSM----TMLNLFIYLMLTITMFTML 221
Cdd:COG1007 262 PGLAAdwqllLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVI 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 222 NM----YMNTTTLT-LSNLWNKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYM 296
Cdd:COG1007 342 LLlsrkGGEAEEIEdLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421
|
....
gi 1236518577 297 RLIY 300
Cdd:COG1007 422 RVVK 425
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
16-299 |
1.90e-23 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 99.33 E-value: 1.90e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 16 GTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKP-RSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNID-SNN 93
Cdd:MTH00196 5 GILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSYINlVLN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 94 MLTSFT----------MIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPliNLNTLMLIALLS 163
Cdd:MTH00196 85 SGQSFSsvsvpigyllIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGL--NVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 164 VLAGGWGGLNQTQLRKILAYSSIAHMG---WMMAILMF-CPSMTMLNLFIYLMLTITMFTMLNMYMNTTTL--TLSNLWN 237
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIGSFeSIQASLVYLFIYIIMSICVFSIILALNVYKNLiiEFSGLSR 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518577 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLI 299
Cdd:MTH00196 243 RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIV 304
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-270 |
5.44e-23 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 97.00 E-value: 5.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 23 SSHWLLIWIGLEINMLSIIPILAKNPK-PRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNID---------SN 92
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSkaltgglnsSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 93 NMLTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLL-TWQKLAPISIMIQMFPLIN-----LNTLMLIALLSVLA 166
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 167 GGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTML---------NMYMNTTTLTLSNLWN 237
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLflcagsviyRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 1236518577 238 KSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ 270
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
15-299 |
7.77e-19 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 87.18 E-value: 7.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 15 TGTMLTMISS-HWLLIWIGLEINMLS--IIPILAKNpKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNI-- 89
Cdd:PRK05777 113 LLGMMVMVSAnDLLTLFLGLELLSLPlyALAALRRD-RRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIak 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 90 -----DSNNMLTSFT---MIIALTMKLGMAPFHFWVPEVTQG-----VSLMTG-------MLLLTWQKLAPISIMIQMFP 149
Cdd:PRK05777 192 aladgSGNSLLLLFGlvfLLVGLAFKLSAVPFHMWTPDVYEGaptpvTAFLATapkiaafAVLLRLLVVAFGGLSEDWQQ 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 150 LinlntLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM-AILMFCPSM---TMLNLFIYLMLTITMFTMLNM-- 223
Cdd:PRK05777 272 V-----LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLvGLAAGTAEGysaVLFYLLAYLFMTLGAFGVISLlr 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518577 224 ---YMNTTTLTLSNLWNKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLI 299
Cdd:PRK05777 347 rkgGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVI 425
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
15-303 |
1.11e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 74.41 E-value: 1.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 15 TGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTIT------- 87
Cdd:COG0651 118 AGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAdlaarla 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 88 NIDSNNMLTSFTMI-IALTMKLGMAPFHFWVPEV----TQGVS-LMTGMLLltwqKLAPISIM---IQMFPLINLNT--- 155
Cdd:COG0651 198 ELDPGLLLAAFALLlVGFGIKAALFPLHFWLPDAypaaPSPVSaLLSGLLT----KVGVYAILrvlTLLFGADPALFlgt 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 156 -LMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILMFCPSMTMLNLFIYLMLTITMFTML-----NMYMNTTT 229
Cdd:COG0651 274 lLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLflaagAIERATGT 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1236518577 230 LTLSN---LWNKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTS 303
Cdd:COG0651 354 RDLDKlggLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
7-193 |
1.06e-12 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 69.12 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 7 LIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRST---------EAATKYFLTQATASMLLMFTIVF- 76
Cdd:MTH00198 191 FALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALy 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 77 ----------NAMHSGQWTITNIDSNNMLTSFTMI-IALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMI 145
Cdd:MTH00198 271 fgftgnegmlGTILSATLETTNIELRQGSLGYLFItVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLT 350
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1236518577 146 QMfpLINLNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:MTH00198 351 SL--VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL 396
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
55-194 |
7.97e-10 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 59.71 E-value: 7.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 55 AATKYFLTQATASMLLMFTIVFNAMHSGQWT--ITNIDSNNMLTSFTMI------IALTMKLGMAPFHFWVPEV-----T 121
Cdd:COG1008 162 AAIKFFLYTLAGSLLMLVAILALYFLAGALTfdIAELAAAPLPLTAQLLlflaffIAFAVKVPMFPFHTWLPDAhveapT 241
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1236518577 122 QGVSLMTGMLLltwqKLAP---ISIMIQMFP---LINLNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMA 194
Cdd:COG1008 242 AGSVLLAGVLL----KMGGyglLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLL 316
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
9-265 |
8.25e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 56.60 E-value: 8.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 9 IVMTIFTGTMLTMISSHWLLIWIGLEinMLSIIPILAK---NPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWT 85
Cdd:PRK02504 115 ILLTATLGGMFLSGATELVMIFISLE--TLSIASYLLTgymKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 86 ITNIDSNNMLTSFTMIIALTM---------KLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLA----PISIMIQMFPLIN 152
Cdd:PRK02504 193 QLSAIALALITSPSLGLALALvfviagiafKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFD 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 153 LN---TLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMaILMFCP-----SMTMLNLFIYLMLTITMFTMLNMY 224
Cdd:PRK02504 273 EQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM-IGLVAGteagyASMVFYLLAYLFMNLGAFACVILF 351
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1236518577 225 -MNTTTLTLSN---LWNKSPTITTMILVSLLSLGGLPPLTGFLPK 265
Cdd:PRK02504 352 sLRTGTDQISDyagLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-193 |
1.81e-08 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 55.81 E-value: 1.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 55 AATKYFLTQATASMLLMFTIVFNAMHSGQWT--ITNIDSNNMLTSFTM------IIALTMKLGMAPFHFWVP----EVTQ 122
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTFTfdLAELGAKSYPLALELllyagfLIAFGVKLPIFPLHTWLPdahgEASA 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1236518577 123 GVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIYGALNafaQDNVKRRLAYSSVSHMGFVL 291
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
6-193 |
2.59e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 55.33 E-value: 2.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 6 LLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNA-MHSGQW 84
Cdd:TIGR01972 108 FYALLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTF 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 85 TITNIDSNNMLTSFTMI------IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIM---IQMFP- 149
Cdd:TIGR01972 188 DLLELLNLPLPFGVQTWlflaffIAFAVKVPLFPLHTWLPDAhveapTAGSVILAGVLL----KMGTYGFLrfnLPLFPd 263
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1236518577 150 --LINLNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:TIGR01972 264 asLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
55-193 |
1.60e-07 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 52.90 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 55 AATKYFL-TQAT-----ASMLLMFTIVFNAMHS---GQWTITNIDSN-NMLTSFTMIIALTMKLGMAPFHFWVPEV---- 120
Cdd:PRK05846 162 AATKFFLyTLLGsllmlVAIIYLVVVYYNATGTfdiADLLNLPLPPGvQYWLFLAFFIAFAVKMPMFPLHTWLPDAhvqa 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 121 -TQGVSLMTGMLLltwqKLAP---ISIMIQMFPLINLNTLMLIALLSVLA---GGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK05846 242 pTAGSVLLAGILL----KMGAyglLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT 317
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-193 |
3.59e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 51.80 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 33 LEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGqwTITNIDSNNMLTSFT--------MIIAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTG--TLNMADLAGALAENPtvvtafgfVLLAL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 105 TMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP------LINLNTLMLIALLSVLAGGWGGLNQ 174
Cdd:PRK08375 213 ALKAAVFPLHTWLPraypAAPPVVTALLSGLVTKVAVYALIRIYFTVFGgdfrfaLGLGWLLAVLALLSMLVGSLAALGQ 292
|
170
....*....|....*....
gi 1236518577 175 TQLRKILAYSSIAHMGWMM 193
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYIL 311
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
17-314 |
3.07e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 48.66 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 17 TMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMF---TIVFNAMHSGQWTITNIDSNN 93
Cdd:PRK06589 129 GVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLpavILIYTKTGNLDFVSGGLFSKN 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 94 M-LTSFTMIIALTMKLGMAPFHFWVPEV----TQGVSLMTGMLLLTWQKLAPISIMIQMFPLINL-------NTLMLIAL 161
Cdd:PRK06589 209 QsIILLLMFIYGIAKTAIFPVHSWLPAAmvahYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLqrifaefNWLIFIPI 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 162 LSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM--AILMFCPSM--TMLNLFIYLMLTITMF-TMLNMYMNTTTLTLSNLW 236
Cdd:PRK06589 289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALlsAFILTPKALgaAILHLVSHSFAKICLFySMGSIYSLKKEDQVDKLH 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 237 NKS---PTITTMILVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIM----ALLNLYFYMRLIYSTSLTSFPT 309
Cdd:PRK06589 369 GTSksfPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSSIYKPSLSE 448
|
....*
gi 1236518577 310 PNNIK 314
Cdd:PRK06589 449 NSFIT 453
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-193 |
7.23e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 47.78 E-value: 7.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 33 LEINMLSIIPILA-KNPKPRSTEAATKYFLTQATASMLLMFTIvfnAMHSGQWTITNIDSNNMLTSFTM----------- 100
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMSENPtvvakialalf 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 101 IIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQ----KLAPISIMIqMFPLINLNTL----MLIALLSVLAGGWGG 171
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAyPAAPSSISAMLLVIKQaglyALARVLFSI-YGPAINLATVgwviIILGCLTMFVGVAMA 305
|
170 180
....*....|....*....|..
gi 1236518577 172 LNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYML 327
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
5-302 |
9.53e-06 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 47.45 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 5 ILLIIVMTIFTGTMLTMisshwLLIWIGLEINMLsIIPILAKNPKPRSTEAATKyfLTQATASMLLMFTIVFnAMHSGQW 84
Cdd:MTH00207 97 FVLSMNMLIFFPHLMIL-----LLGWDGLGLVSF-ILVIYYQNPKSLGAGMITA--LTNRIGDVMLLLSIGW-TLNQGHW 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 85 TITNIDSNNM--LTSFTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLIN-----LNTLM 157
Cdd:MTH00207 168 SITNMWQTDMnnYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSstywfNPALL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 158 LIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAILmfcpSMTMLNLFIYLMLTITMF---------TMLNMYMNTT 228
Cdd:MTH00207 248 LTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASL----GLGMPKLALFHLITHALFkallfvcagSLIHSHHHSQ 323
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1236518577 229 TL-TLSNLWNKSPTITTMILVSLLSLGGLPPLTGFLPKWLIIQ-ELTKNNNIIVATMMAIMALLNLYFYMRLIYST 302
Cdd:MTH00207 324 DLrTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILEsSLFYPHNSLMILMIFLATALTAAYSTRFTLAV 399
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
293-343 |
1.68e-05 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 41.86 E-value: 1.68e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1236518577 293 YFYMRLIYSTSLTSFPTPNNIKMKWQFQLKKRPLLLSPLIILSTLSLPLSP 343
Cdd:pfam06444 1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLSILLLPLTP 51
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
98-319 |
1.86e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 45.63 E-value: 1.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 98 FTMIIALTMKLGMAPFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNTLMLIALLSVLAggwgGLNQTQL 177
Cdd:MTH00091 61 YFQFLILMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFLLLFGLLICFFQ----MFLLKSY 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 178 RKILAYSSIAHMGWMMAILMFCPSMTMlnlFIYLMLTITMFTMLNMYMNTTTLTLSNLwnksptittmilVSLLSLGGLP 257
Cdd:MTH00091 137 KNLLILSSTESFNWLILSFFFSFFNVF---FLFFYYFLLMLFLIPKFNNVNKLNFVSW------------ETLLVFMNLP 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1236518577 258 PLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYSTSLTSFPTPNNIKMKWQF 319
Cdd:MTH00091 202 FSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFF 263
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
11-196 |
3.89e-05 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 45.53 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 11 MTIFTGTMLTM-ISSHWLLIWIGLEI-NMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITN 88
Cdd:COG1009 117 LLLFMAAMLGLvLSDNLLLLFVFWELvGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSE 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 89 IDSN--NMLTSFTMIIALTM-------KLGMAPFHFWVPE-----------------VTQGVSLMTgmllltwqKLAPIS 142
Cdd:COG1009 197 LLAAapTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDamegptpvsallhaatmVKAGVYLLA--------RLSPLF 268
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1236518577 143 IMIQMFplinLNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMMAIL 196
Cdd:COG1009 269 ALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
49-301 |
1.29e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 43.81 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 49 KPRSTEAATKYFLTQATASMLLMFTIVFNAMHSGQWTITNIDSNNMLTSFTM-------------------IIALTMKLG 109
Cdd:PRK12667 159 RGDAVEAAIKYALIGAVGTTLYFLALAFLYATFGTLNMADLSAKIRGLSFPLtgglagnpplalgvalalaLWAFTIKAA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 110 MAPFHFWVPEV----TQGVSLMTGMLLLTWQKLAPISIMIQMF-------PLIN--LNTLMLIALLSVLAGGWGGLNQTQ 176
Cdd:PRK12667 239 IFPNHFWLPDAhpaaPSPVSAMLSGLVVNVGAYAIIRFLYTIFgispsliDFRAalSPILIILGAVSAIIGALMMVVQKD 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 177 LRKILAYSSIAHMGW-MMAILMfcPSMTMLNLFIYLMLTITMF-TMLNM-------YMNTTTLT-LSNLWNKSPTITTMI 246
Cdd:PRK12667 319 VKRLLAYSTISHMGYiFMGIGI--GTQLGLAAALFHIINHAIAkSLLFLasgvfihAAGTRDIDeLAGLGRKMPIASFAF 396
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1236518577 247 LVSLLSLGGLPPLTGFLPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLIYS 301
Cdd:PRK12667 397 LIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYS 451
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
5-193 |
3.14e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 42.43 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 5 ILLIIVMTIFTGTMLtmisshwlLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATA------SMLLMFTIVFNA 78
Cdd:PRK08676 111 LLSVITFAFFSDNLA--------LFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 79 MHSG--QWT-----ITNIDSNNMLTSFT-MIIALTMKLGMAPFHFWVPEV-TQGVSLMTGMLLLTWQKLAPISImIQMFP 149
Cdd:PRK08676 183 LGTGtlNWTelaahASLLSPSVLGASFLfIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGI-LRLSA 261
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1236518577 150 LIN--------LNTLMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK08676 262 LLRqsgaaeqfSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLML 313
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
102-213 |
6.50e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 41.58 E-value: 6.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAP---ISIMIQMFPLINLNTLMLIALLSVLAGGWGGLN 173
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQAhveapVAGSVILAGVLL----KLGGygfIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLT 289
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1236518577 174 ---QTQLRKILAYSSIAHMGwMMAILMFCPSMTMLNLFIYLML 213
Cdd:MTH00217 290 tcrQVDLKRIIAYSSVAHMG-LVTLGIFSHTIQGLVAAIFLML 331
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
13-192 |
7.25e-04 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 41.45 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 13 IFTGTML-TMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFL------TQATASMLLMFTIVFNAMHSGQ-- 83
Cdd:PRK06458 116 LFLFTMLlALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIicsvgvAFALFGTILVYANAATVMGDGEma 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 84 --WTITN-----IDSNNMLTSFTMI-IALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLI 151
Cdd:PRK06458 196 ilWTELLkhaslLDPTLMKLAFVFLlIGFGTKVGLFPMHAWLPdahsEAPSPVSALLSGVLLNVALYAVLRYYILIDAAI 275
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1236518577 152 N---LNTLMLI-ALLSVLAGGWGGLNQTQLRKILAYSSIAHMGWM 192
Cdd:PRK06458 276 GsdfPGRLLLIfGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLI 320
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-299 |
8.53e-04 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 41.14 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 51 RSTEAATKYFLTQATASMLLMFTIVFNAMHSGQ----WTITN-IDSNNMLTSFTMIIALT-------MKLGMAPFHFWVP 118
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFSWLYGLSGGeielQEIVNgLINTQMYNSPGISIALIfitvgigFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 119 EVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLI--NLNT-----LMLIALLSVLAGGWGGLNQTQLRKILAYSSIAHMGW 191
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPfyFSSNewhllLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 192 MM-AILMFCPSMTMLNLFIYLMLTITM----FTMLNMY-MNTTTLTL---SNLWNKSPTITTMILVSLLSLGGLPPLTGF 262
Cdd:CHL00049 319 VIiGIIVGDSNDGYASMITYMLFYIFMnlgtFACIVLFgLRTGTDNIrdyAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398
|
250 260 270
....*....|....*....|....*....|....*..
gi 1236518577 263 LPKWLIIQELTKNNNIIVATMMAIMALLNLYFYMRLI 299
Cdd:CHL00049 399 FGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKII 435
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
100-193 |
8.55e-04 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 41.24 E-value: 8.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 100 MIIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP---LINLNTLMLIALLSVLAGGWGGL 172
Cdd:PRK07363 211 LLLGFGIKIPLVPLHTWLPdaytEASPAVAILLGGVLAKLGTYGLLRFGLQLFPqtwSLVAPGLAIIGTISVIYGALSAI 290
|
90 100
....*....|....*....|.
gi 1236518577 173 NQTQLRKILAYSSIAHMGWMM 193
Cdd:PRK07363 291 AQKDIKRMVAYSSIGHMGYIL 311
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
113-270 |
1.24e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 40.71 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 113 FHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLN--TLMLIALLSVLAGGWG---GLNQTQLRKILAYSSIA 187
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAplTLLIITIFGALTAFFAatvGLVQNDLKKVIAYSTCS 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 188 HMGWMMAILMFCPS--MTMLNLFIYLMLTITMFTMLNMYMNTTTL------TLSNLWNKSPTITTMILVSLLSLGGLPPL 259
Cdd:MTH00032 324 QLGYMVLIIGIEGShnVGLFHLVNHAFFKALLFLSAGSVIHSTTVdeqdmrKMGGLIHSIPFTYTMMLIGSFSIMGLPYL 403
|
170
....*....|.
gi 1236518577 260 TGFLPKWLIIQ 270
Cdd:MTH00032 404 TGFYSKDLILE 414
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
102-213 |
1.56e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 40.05 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 102 IALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIMIQMFPLINLNTLM---LIALLSVLAGGWGGL- 172
Cdd:MTH00204 217 LSLAVKIPQIPFHIWLPQAhveapVAGSVILAGILL----KLGGYGFLRFSWPLFPAASEYfapLIVMLSVIAVIYGSLt 292
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1236518577 173 --NQTQLRKILAYSSIAHMGwMMAILMFCPSMTMLNLFIYLML 213
Cdd:MTH00204 293 tcRQVDFKRLIAYSSVAHMG-LVPLGLFTHTIEGLVAAVFLML 334
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
100-213 |
3.38e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 39.13 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 100 MIIALTMKLGMAPFHFWVPEV-----TQGVSLMTGMLLltwqKLAPISIMIQMFPLINLNT------LMLIALLSVLAGG 168
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLVRLSWPILPLGAqnlapaVIAMGIVGIVYGS 311
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1236518577 169 WGGLNQTQLRKILAYSSIAHMGwMMAILMFCPSMTMLNLFIYLML 213
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMG-LVSITLVTHDIIGLTGSIFIML 355
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
2-193 |
3.68e-03 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 38.92 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 2 KPPILLIIVMTIFTGTMLTMISSHWLLIWIGLEINMLSIIPILAKNPKPRSTEAATKYFLTQATASMLLMFTIVFNAMHS 81
Cdd:PRK02546 113 KPKLFYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSLFILLAALAMAFYG 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 82 GQWT--ITNIDSNNMLTSFTM------IIALTMKLGMAPFHFWVP----EVTQGVSLMTGMLLLTWQKLAPISIMIQMFP 149
Cdd:PRK02546 193 DTPTfdMTALAAKDFGLGFQLlcyaglLIAYGVKLPIVPLHTWLPdahgEATAPVHMLLAGILLKMGGYALLRMNAGMLP 272
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1236518577 150 LINLNTLMLIALLSVLAGGWGGLN---QTQLRKILAYSSIAHMGWMM 193
Cdd:PRK02546 273 DAHAQFAPLLIVLGVVNIIYAALTsfaQRNLKRKIAYSSISHMGFVL 319
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
112-194 |
9.51e-03 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 38.10 E-value: 9.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1236518577 112 PFHFWVPEVTQGVSLMTGMLLLTWQKLAPISIMIQMFPLINLNT-----LMLIALLSVLAGGWGGLNQTQLRKILAYSSI 186
Cdd:PRK12650 226 PFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVAvwnwlLIIVGMITALMGAVFAVQKTDLKKLTAYSTV 305
|
....*...
gi 1236518577 187 AHMGWMMA 194
Cdd:PRK12650 306 SQLGWIVA 313
|
|
|