|
Name |
Accession |
Description |
Interval |
E-value |
| NT-C2 |
pfam10358 |
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally ... |
3-149 |
2.61e-19 |
|
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light.
Pssm-ID: 463058 Cd Length: 143 Bit Score: 85.45 E-value: 2.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 3 KEQVMNYIAFILVEKVQFPEKYNKPLFIRVQRKKTAGgqtklafSSETSYKNLDNNLIAHFDNEFSLPFT--TVKKGDKY 80
Cdd:pfam10358 1 KKRKPKFQFVLTIHELQNLPLVGGELFVKWRRGDKKG-------SSGTTEKALVNNGRAIFNEEFSIPVTlfLDKKGGKY 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 123492947 81 VKKVVEIQLVSVSnKKKEEVEICKWRFDASNMPD--PRDPSVHFSVASSDFGNVNLYVRFCVIPAEEFSIG 149
Cdd:pfam10358 74 EEKLLEFSVYKVT-KKGKKKVLGKASIDLAEYANlkKKPTTVRFLLKKSSKKNATLSLSIQVLPLGEDPND 143
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
353-560 |
6.78e-13 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 73.28 E-value: 6.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 353 ISNETKSIEEEQK--KETATEHVKEETVESVQE-TDEKQQENSSSSQKDNENEQKLENSQEprTQKEEIAETIQEDTEKQ 429
Cdd:PTZ00341 917 IAHEINLINKELKnqNENVPEHLKEHAEANIEEdAEENVEEDAEENVEENVEENVEENVEE--NVEENVEENVEENVEEN 994
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 430 QENN--ETSPEPVKEEI--NDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNE 505
Cdd:PTZ00341 995 VEENveENIEENVEENVeeNIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEE 1074
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 123492947 506 EKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQE 560
Cdd:PTZ00341 1075 NIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEE 1129
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
191-667 |
1.93e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.93e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 191 LERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPSSSQTDKDISIHQHPEQTEKEIDSTKTE 270
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 271 EKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEittepEPIKEDNIITSQEN 350
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD-----EAKKKAEEAKKAEE 1461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 351 IEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQE--NSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEK 428
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 429 QQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPE---------QEQENQEVTESVKELNQQKTESQNPEQEQNTE 499
Cdd:PTZ00121 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 500 NVQVNEEKQQDTDKETEENKEQTttvtiETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEmstflAMKEEEERlsKL 579
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAE-----EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE-----AKKAEEDE--KK 1689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 580 QAAEIARQEEENRLFEEKRRENEQKLQEKIK----KLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKsIEETHYIIEP 655
Cdd:PTZ00121 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKAEElkkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK-IAHLKKEEEK 1768
|
490
....*....|..
gi 123492947 656 KAEIVKPEEEKI 667
Cdd:PTZ00121 1769 KAEEIRKEKEAV 1780
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
322-555 |
9.84e-12 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 69.43 E-value: 9.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 322 NHIETEQKSEITTEPEPIKEDniitSQENIEISNETKSieEEQKKETATEHVKEETVESVQET-DEKQQENSSSSQKDNE 400
Cdd:PTZ00341 922 NLINKELKNQNENVPEHLKEH----AEANIEEDAEENV--EEDAEENVEENVEENVEENVEENvEENVEENVEENVEENV 995
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 401 NEQKLENSQEprTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISnstqnelepENIPEQEQENQEvtESVK 480
Cdd:PTZ00341 996 EENVEENIEE--NVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIE---------ENAEENVEENIE--ENIE 1062
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123492947 481 ELNQQKTESQNPEQEQNTE-NVQVN-EEKQQDTDKETEENKEQTTTvtiETPQQNTTENGEQEKTIKKEKSKEELNE 555
Cdd:PTZ00341 1063 EYDEENVEEIEENIEENIEeNVEENvEENVEEIEENVEENVEENAE---ENAEENAEENAEEYDDENPEEHNEEYDE 1136
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
258-665 |
1.78e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 258 EQTEKEIDSTKTEEkeSQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSnqnhiETEQKSEITTEPE 337
Cdd:PTZ00121 1215 EEARKAEDAKKAEA--VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKA-----EEARKADELKKAE 1287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 338 PIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEE 417
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 418 IAETIQEDTEKQQENNETSPEPVKEEinDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQN 497
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKA--DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 498 TENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLS 577
Cdd:PTZ00121 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 578 KLQAAEIARQEEENRLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEETHYIIEP-- 655
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEek 1605
|
410
....*....|..
gi 123492947 656 --KAEIVKPEEE 665
Cdd:PTZ00121 1606 kmKAEEAKKAEE 1617
|
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
379-651 |
2.36e-11 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 68.20 E-value: 2.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 379 ESVQETDEKQQENSSSSQKDNENEQklENSQEPRTQKEEIAeTIQEDTEKQQENNEtspEPVKEEINDEEQKEISNSTQN 458
Cdd:NF033875 39 DNVQAAELDTQPGTTTVQPDNPDPQ--SGSETPKTAVSEEA-TVQKDTTSQPTKVE---EVASEKNGAEQSSATPNDTTN 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 459 ELEPENIPEQEQENQEVT--ESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTE 536
Cdd:NF033875 113 AQQPTVGAEKSAQEQPVVspETTNEPLGQPTEVAPAENEANKSTSIPKEFETPDVDKAVDEAKKDPNITVVEKPAEDLGN 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 537 NGEQEKTIKKEK----SKEELNEIMRQEVEmstflaMKEEEERLSKlQAAEIARQEEEnrlfEEKRRENEQKLQEKIKKL 612
Cdd:NF033875 193 VSSKDLAAKEKEvdqlQKEQAKKIAQQAAE------LKAKNEKIAK-ENAEIAAKNKA----EKERYEKEVAEYNKHKNE 261
|
250 260 270
....*....|....*....|....*....|....*....
gi 123492947 613 KKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEETHY 651
Cdd:NF033875 262 NGYVNEAISKNLVFDQSVVTKDTKISSIKGGKFIKATDF 300
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
313-517 |
1.07e-10 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 65.96 E-value: 1.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 313 NVEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETKSIE------EEQKKETATEHVKEETVESVQET-D 385
Cdd:PTZ00341 925 NKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEEnveenvEENVEENVEENVEENVEENVEENiE 1004
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 386 EKQQENSSSSQKDNENEQKLENSQEPRTQKEEI----AETIQEDTEkqqENNETSPEPVKEEINDEEQKEISNSTQNELE 461
Cdd:PTZ00341 1005 ENVEENVEENIEENVEEYDEENVEEVEENVEEYdeenVEEIEENAE---ENVEENIEENIEEYDEENVEEIEENIEENIE 1081
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 123492947 462 pENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEE 517
Cdd:PTZ00341 1082 -ENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
192-686 |
7.35e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 7.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 192 ERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPSSSQTDKDISIHQHPEQTEKeIDSTKTEE 271
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK-ADEAKKKA 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 272 KESQKQDNFEKeQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENI 351
Cdd:PTZ00121 1312 EEAKKADEAKK-KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 352 EISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKlENSQEPRTQKEEIAETiqEDTEKQQE 431
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKA--EEAKKKAE 1467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 432 NNETSPEPVKEEindEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDT 511
Cdd:PTZ00121 1468 EAKKADEAKKKA---EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE 1544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 512 DKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEeerlsKLQAAEIARQEEEN 591
Cdd:PTZ00121 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK-----KMKAEEAKKAEEAK 1619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 592 RLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKsnikEEVKIDQINDNKSIEEThyiiEPKAEIVKPEEEKietif 671
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE----EENKIKAAEEAKKAEED----KKKAEEAKKAEED----- 1686
|
490
....*....|....*
gi 123492947 672 aqekePEQIEEEHKK 686
Cdd:PTZ00121 1687 -----EKKAAEALKK 1696
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
196-666 |
1.19e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 196 KKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPSSSQTDKDISIHQHPEQTEKEIDSTKTEEKESQ 275
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 276 KQDNFEKE-----QKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNhIETEQKSEITTEPEPIKEDNIITSQEN 350
Cdd:PTZ00121 1484 KADEAKKKaeeakKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK-ADEAKKAEEKKKADELKKAEELKKAEE 1562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 351 IEISNETKSIE----------------EEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQ 414
Cdd:PTZ00121 1563 KKKAEEAKKAEedknmalrkaeeakkaEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 415 KEEIAETiqEDTEKQQENNETSPEPVKEEiNDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELnQQKTESQNPEQ 494
Cdd:PTZ00121 1643 AEEKKKA--EELKKAEEENKIKAAEEAKK-AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL-KKKEAEEKKKA 1718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 495 EQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEE 574
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 575 RL--SKLQAAEIARQEEENRLFEEKRRENEqKLQEKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEETHYI 652
Cdd:PTZ00121 1799 KIkdIFDNFANIIEGGKEGNLVINDSKEME-DSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK 1877
|
490
....*....|....
gi 123492947 653 IEPKAEIVKPEEEK 666
Cdd:PTZ00121 1878 EDDEEEIEEADEIE 1891
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
258-531 |
3.84e-09 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 60.78 E-value: 3.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 258 EQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKseitTEPE 337
Cdd:TIGR00927 649 GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE----TEAE 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 338 PIKEDNiitsqeniEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDnENEQKLENSQEPRTQKEE 417
Cdd:TIGR00927 725 GTEDEG--------EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKED-EDEGEIQAGEDGEMKGDE 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 418 IAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQnELEPENIPEQEQENQEVTEsvkELNQQKTESQNPEQEQN 497
Cdd:TIGR00927 796 GAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQ-ELNAENQGEAKQDEKGVDG---GGGSDGGDSEEEEEEEE 871
|
250 260 270
....*....|....*....|....*....|....
gi 123492947 498 TEnvqvnEEKQQDTDKETEENKEQTTTVTIETPQ 531
Cdd:TIGR00927 872 EE-----EEEEEEEEEEEEEEEENEEPLSLEWPE 900
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-652 |
4.18e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 60.76 E-value: 4.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 270 EEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKS--EITTEPEPIKEDNIITS 347
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLklEAEELLADRVQEAQDKI 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 348 QENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLE---NSQEPRTQKEEIAETIQE 424
Cdd:pfam02463 735 NEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEeklKAQEEELRALEEELKEEA 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 425 DTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESqnpEQEQNTENVQVN 504
Cdd:pfam02463 815 ELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEEL---EEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 505 EEKQQDTDKETEENKEQTTTVTIETPQ-QNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAE 583
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEiEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 123492947 584 IARQEEENRLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEETHYI 652
Cdd:pfam02463 972 LGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYL 1040
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-633 |
6.74e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 6.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENnetspepv 440
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL-------- 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 441 KEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQnpEQEQNTENVQVNEEKQQDTDKETEENKE 520
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 521 QTTTVTietpQQNTTENGEQEKTIKKEKSKEELNEIMRQEvemstflAMKEEEERLSKLQAAEIARQEEENRLFEEKRRE 600
Cdd:COG1196 393 RAAAEL----AAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270
....*....|....*....|....*....|...
gi 123492947 601 NEQKLQEKIKKLKKQKQIEEQKQVESEKSNIKE 633
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
229-451 |
5.60e-08 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 57.10 E-value: 5.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 229 KKQKKHKSR-----------GLDNPSSSQTDKDISIHQH-PEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSK 296
Cdd:PTZ00341 900 KKDKKAKKKdakdlsgniahEINLINKELKNQNENVPEHlKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENV 979
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 297 EQinEVTEISDVKQQENVE--ISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETKSIEEEqkkETATEHVK 374
Cdd:PTZ00341 980 EE--NVEENVEENVEENVEenVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIE---ENAEENVE 1054
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123492947 375 EETVESVQETDEKQQENSSSSQKDNENEQKLENSQEprtQKEEIAETIQEDTEKQ-QENNETSPEPVKEEINDEEQKE 451
Cdd:PTZ00341 1055 ENIEENIEEYDEENVEEIEENIEENIEENVEENVEE---NVEEIEENVEENVEENaEENAEENAEENAEEYDDENPEE 1129
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
256-603 |
2.90e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 54.79 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 256 HPEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEisdvkqqeNVEISNSNQNHIETEQK-SEITT 334
Cdd:PTZ00341 763 HLKKPKKAAKKLEQRSKANKEELANENNKLMNILKEYFGNNEQINSITY--------NFENINLNEDNENGSKKiLDLNH 834
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 335 EPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLEN------- 407
Cdd:PTZ00341 835 KDQKEIFEEIISYIVDISLSDIENTAKNAAEQILSDEGLDEKKLKKRAESLKKLANAIEKYAGGGKKDKKAKKkdakdls 914
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 408 ----------SQEPRTQKEEIAETIQEDTEKQQENN------ETSPEPVKEEINDEEQKEISNSTQNELEpENIPEQEQE 471
Cdd:PTZ00341 915 gniaheinliNKELKNQNENVPEHLKEHAEANIEEDaeenveEDAEENVEENVEENVEENVEENVEENVE-ENVEENVEE 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 472 NQE--VTESVKElNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKS 549
Cdd:PTZ00341 994 NVEenVEENIEE-NVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEI 1072
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 123492947 550 KEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEEN--RLFEEKRRENEQ 603
Cdd:PTZ00341 1073 EENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENaeENAEEYDDENPE 1128
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
276-521 |
3.53e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 54.62 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 276 KQDNFEKEQKQDHK-TETEPSKEQINEVTEISDVKQQENVEisnsNQNHIETEQKSEITTEPEPIKEDNIITSQENIEIS 354
Cdd:TIGR00927 632 KGDVAEAEHTGERTgEEGERPTEAEGENGEESGGEAEQEGE----TETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 355 NETKSIEEEQKKETATEHVKEE-TVESVQETDEKQQENSSSSQKDNENEQKLENsQEPRTQKEEIAETIQEDTEKQQENN 433
Cdd:TIGR00927 708 GETEAEEVEHEGETEAEGTEDEgEIETGEEGEEVEDEGEGEAEGKHEVETEGDR-KETEHEGETEAEGKEDEDEGEIQAG 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 434 E-------TSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEE 506
Cdd:TIGR00927 787 EdgemkgdEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE 866
|
250
....*....|....*
gi 123492947 507 KQQDTDKETEENKEQ 521
Cdd:TIGR00927 867 EEEEEEEEEEEEEEE 881
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
361-630 |
3.75e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 54.62 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQETDEKQQEnsssSQKDNENEQKLENSQEPRTQKEEIAETiQEDTEKQQENNETSPEPV 440
Cdd:TIGR00927 637 EAEHTGERTGEEGERPTEAEGENGEESGGE----AEQEGETETKGENESEGEIPAERKGEQ-EGEGEIEAKEADHKGETE 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 441 KEEINDEEQKEISnSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKE 520
Cdd:TIGR00927 712 AEEVEHEGETEAE-GTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGE 790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 521 QtttvtietpQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEiARQEEENRLFEEKRRE 600
Cdd:TIGR00927 791 M---------KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGE-AKQDEKGVDGGGGSDG 860
|
250 260 270
....*....|....*....|....*....|
gi 123492947 601 NEQKLQEKIKKLKKQKQIEEQKQVESEKSN 630
Cdd:TIGR00927 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEEN 890
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
258-670 |
4.04e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 258 EQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPE 337
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 338 PIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEE 417
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 418 IAETIQEDTEKQ-------------QENNETSPEPVKEEINDEEQKEISNSTQNELEPE-----------------NIPE 467
Cdd:COG1196 475 LEAALAELLEELaeaaarllllleaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEaayeaaleaalaaalqnIVVE 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 468 QEQENQEVTESVKE----------LNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTEN 537
Cdd:COG1196 555 DDEVAAAAIEYLKAakagratflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 538 GEQEKTIKKEKSKEELNEimRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEENRLFEEKRRENEQKLQEKIKKLKKQKQ 617
Cdd:COG1196 635 ALRRAVTLAGRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 123492947 618 IEEQKQVESEKSNIKEEVKIDQINDNKSIEETHYIIEPKAEIVKPEEEKIETI 670
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
361-628 |
4.52e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEprTQKEEIAETIQEDTEKQQENNEtspepV 440
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--ELRLELEELELELEEAQAEEYE-----L 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 441 KEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQnpEQEQNTENVQVNEEKQQDTDKETEENKE 520
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE--EELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 521 QTTTVTIEtpQQNTTENGEQEKTIKKEKSKEELNEIMRQEvemstflamKEEEERLSKLQAAEIARQEEENRLFEEKRRE 600
Cdd:COG1196 372 AELAEAEE--ELEELAEELLEALRAAAELAAQLEELEEAE---------EALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260
....*....|....*....|....*...
gi 123492947 601 NEQKLQEKIKKLKKQKQIEEQKQVESEK 628
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAEL 468
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
352-623 |
5.40e-07 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 53.85 E-value: 5.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 352 EISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSS-SQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQ 430
Cdd:TIGR00927 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENeSEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 431 ENNETSPEPVKEE---INDEEQKEISNSTQNELEPENIPEQEQENQEV-----TESVKELNQQKTESQ---NPEQEQNTE 499
Cdd:TIGR00927 717 HEGETEAEGTEDEgeiETGEEGEEVEDEGEGEAEGKHEVETEGDRKETehegeTEAEGKEDEDEGEIQageDGEMKGDEG 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 500 NVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNttENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEErlskl 579
Cdd:TIGR00927 797 AEGKVEHEGETEAGEKDEHEGQSETQADDTEVKD--ETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEE----- 869
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 123492947 580 qaaeiarqEEENRLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQ 623
Cdd:TIGR00927 870 --------EEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
309-635 |
7.12e-07 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 52.95 E-value: 7.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 309 KQQENVEISNSNQNHIETEQKSEIttepepiKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQ 388
Cdd:pfam02029 21 RQKEEEEPSGQVTESVEPNEHNSY-------EEDSELKPSGQGGLDEEEAFLDRTAKREERRQKRLQEALERQKEFDPTI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 389 QENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEiSNSTQNELEPENIPEQ 468
Cdd:pfam02029 94 ADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEEG-EEEEDKSEEAEEVPTE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 469 EQENQEVT-ESVKELNQQKTESQNPEQEQntenVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENgEQEKTIKKE 547
Cdd:pfam02029 173 NFAKEEVKdEKIKKEKKVKYESKVFLDQK----RGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQEREE-EAEVFLEAE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 548 KSKEELNEiMRQEVEmstflamKEEEERLSKLQAAEIARQEEENRLFEEKRRENEQklqekIKKLKKQKQIEEQKQVESE 627
Cdd:pfam02029 248 QKLEELRR-RRQEKE-------SEEFEKLRQKQQEAELELEELKKKREERRKLLEE-----EEQRRKQEEAERKLREEEE 314
|
....*...
gi 123492947 628 KSNIKEEV 635
Cdd:pfam02029 315 KRRMKEEI 322
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-592 |
9.70e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 9.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 352 EISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQE 431
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 432 NNETSpepvKEEINDEEQKEISNSTQNELEPEnipEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDT 511
Cdd:COG1196 355 EAEAE----LAEAEEALLEAEAELAEAEEELE---ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 512 DKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEEN 591
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
.
gi 123492947 592 R 592
Cdd:COG1196 508 E 508
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
284-644 |
3.52e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.28 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 284 QKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQN---HIETEQKS----EITTEPEPIKEDNIITSQENIEISNE 356
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNqllHIVQHQKAvserQQQEKFEKMEQERLRQEKEEKAREVE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 357 TKSIEEEQKKETATEHVKEETVESVQE--TDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENne 434
Cdd:pfam17380 314 RRRKLEEAEKARQAEMDRQAAIYAEQErmAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKN-- 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 435 tspEPVKEEINDEEQKEIsnstQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNE-EKQQDTDK 513
Cdd:pfam17380 392 ---ERVRQELEAARKVKI----LEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQQVER 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 514 ETEENKEQTTtvtietpqqnttENGEQEKTIKKEKSKEELN-EIMRQEVEMSTfLAMKEEEERLSKLQAAEIARQ----- 587
Cdd:pfam17380 465 LRQQEEERKR------------KKLELEKEKRDRKRAEEQRrKILEKELEERK-QAMIEEERKRKLLEKEMEERQkaiye 531
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 123492947 588 EEENRLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKsniKEEVKIDQINDNK 644
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAME---REREMMRQIVESE 585
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
204-486 |
6.42e-06 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 50.38 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 204 LTKEQPQEPQKKHHKSKGKHESDTTKKQKkhksrgldNPSSSQTDKdisihQHPEQTEKEIDSTKTEEKESQKQDNFEKE 283
Cdd:TIGR00927 630 LSKGDVAEAEHTGERTGEEGERPTEAEGE--------NGEESGGEA-----EQEGETETKGENESEGEIPAERKGEQEGE 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 284 -----QKQDHKTETEPSKEQINEVTEISDVKQQENVEiSNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETK 358
Cdd:TIGR00927 697 geieaKEADHKGETEAEEVEHEGETEAEGTEDEGEIE-TGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGK 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 359 SIEEEQKKETAT--EHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETS 436
Cdd:TIGR00927 776 EDEDEGEIQAGEdgEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGG 855
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 123492947 437 PEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQK 486
Cdd:TIGR00927 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-593 |
1.64e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 345 ITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQE 424
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 425 DTEKQQENNETSPEPVKEEIndEEQKEISNSTQNELEPENIPEQEQENQeVTESVKELNQQKTESQNPEQEQNTEN--VQ 502
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKL--EELKEELESLEAELEELEAELEELESR-LEELEEQLETLRSKVAQLELQIASLNneIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 503 VNEEKQQDTDKETEENKEQtttvtIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTflAMKEEEERLSKLQAA 582
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQE-----IEELLKKLEEAELKELQAELEELEEELEELQEELERLEE--ALEELREELEEAEQA 476
|
250
....*....|.
gi 123492947 583 EIARQEEENRL 593
Cdd:TIGR02168 477 LDAAERELAQL 487
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
248-599 |
1.76e-05 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 48.97 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 248 DKDISIHQHPEQTEKEIDSTKTEEKESQKQDNFEKEQKqdhkTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETE 327
Cdd:COG5192 338 DKDRVYIEVPTSNFSKDENSEAGEGEKMKMQLQEIEQD----PGVDGVGLQLFSNSDAIDTVDRESSEIDNVGRKTRRQP 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 328 QKSEIttEPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLEN 407
Cdd:COG5192 414 TGKAI--AEETSREDELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDNEEVAFDSDSQFDESEGNLRWKEGLASKLAY 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 408 SQEPR----TQKEEIAETIQED---TEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVK 480
Cdd:COG5192 492 SQSGKrgrnIQKIFYDESLSPEeciEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFEELKKKWS 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 481 ELNQQK--------TESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQT-----TTVTIETPQQNTTENGEQEKTIKKE 547
Cdd:COG5192 572 SLAQLKsrfqkdatLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESrgssvTAENEESADEVDYETEREENARKKE 651
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 123492947 548 KSKEELNEIMRQEVEMSTFLAMKEEEERLSKlqAAEIARQEEENRLFEEKRR 599
Cdd:COG5192 652 ELRGNFELEERGDPEKKDVDWYTEEKRKIEE--QLKINRSEFETMVPESRVV 701
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
325-603 |
1.78e-05 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 48.84 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 325 ETEQKSEITTEPEpikEDNIITSQENIEISNETKSIEEEQ----KKETATEHVKEETVESVQETDEKQQENSSSSQKDNE 400
Cdd:TIGR00927 637 EAEHTGERTGEEG---ERPTEAEGENGEESGGEAEQEGETetkgENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 401 NEQKLENSQEPRTQKEEIAETIQEDTEKQQEN-NETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESV 479
Cdd:TIGR00927 714 EVEHEGETEAEGTEDEGEIETGEEGEEVEDEGeGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKG 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 480 KELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEimrq 559
Cdd:TIGR00927 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEE---- 869
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 123492947 560 evemstflamKEEEErlsklqaaeiaRQEEENRLFEEKRRENEQ 603
Cdd:TIGR00927 870 ----------EEEEE-----------EEEEEEEEEEEEEEENEE 892
|
|
| rad2 |
TIGR00600 |
DNA excision repair protein (rad2); All proteins in this family for which functions are known ... |
172-603 |
4.65e-05 |
|
DNA excision repair protein (rad2); All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273166 [Multi-domain] Cd Length: 1034 Bit Score: 47.59 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 172 DAFGISDNDIDATDSNLSSLeRKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPSSSQTDKDI 251
Cdd:TIGR00600 311 ESLPSLSSQLDSNSEDLKSS-PWEKLKPESESIVEAEPPSPRTLLAKQAAMSESSSEDSDESEWERQELKRNNVAFVDDG 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 252 SIHQhpeqtekeidSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSE 331
Cdd:TIGR00600 390 SLSP----------RTLQAIGQALDDDEDKKVSASSDDQASPSKKTKMLLISRIEVEDDDLDYLDQGEGIPLMAALQLSS 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 332 ITTEPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEEtvesVQETDEKQQENSSSSQKDNENEQKLENSQEP 411
Cdd:TIGR00600 460 VNSKPEAVASTKIAREVTSSGHEAVPKAVQSLLLGATNDSPIPSE----FTILDRKSELSIERTVKPVSSEFGLPSQRED 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 412 R----TQKEEIAETIQEDTEKQQENNETSP-EPVKEEIN---DEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELN 483
Cdd:TIGR00600 536 KlaipTEGTQNLQGISDHPEQFEFQNELSPlETKNNESNlssDAETEGSPNPEMPSWSSVTVPSEALDNYETTNPSNAKE 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 484 QQKTESQNPEQEQNTE--------NVQVNEEKQQDTDKETEENK----------EQTTTVTIETPQQNTTENGEQEKTIK 545
Cdd:TIGR00600 616 VRNFAETGIQTTNVGEsadlllisNPMEVEPMESEKEESESDGSfievdsvsstLELQVPSKSQPTDESEENAENKVASI 695
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 546 KEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEENRLFE--EKRRENEQ 603
Cdd:TIGR00600 696 EGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEanLLAEQNSL 755
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
361-668 |
5.18e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEpv 440
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQ-- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 441 kEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKE 520
Cdd:pfam02463 244 -ELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 521 QTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEENRLFEEKRRE 600
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123492947 601 NEQKLQEKIKKLKKQKQIEEQKQvESEKSNIKEEVKIDQINDNKSIEETHYIIEPKAEIVKPEEEKIE 668
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKEEK-KEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
362-536 |
7.46e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.96 E-value: 7.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 362 EEQKKETATEHVKEEtvesvqETDEKQQENSSSSQ---KDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPE 438
Cdd:PRK10811 583 GEETKPQEQPAPKAE------AKPERQQDRRKPRQnnrRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRES 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 439 PVKEEI-NDEEQKEISNSTQNELEPENIPEQEQENQEVtesvKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDK---E 514
Cdd:PRK10811 657 QQAEVTeKARTQDEQQQAPRRERQRRRNDEKRQAQQEA----KALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKvriE 732
|
170 180
....*....|....*....|..
gi 123492947 515 TEENKEQTTTVTIETPQQNTTE 536
Cdd:PRK10811 733 QSVAEEAVAPVVEETVAAEPVV 754
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
323-526 |
7.93e-05 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.74 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 323 HIETEQKSEITTEPEPIkeDNIITSQENIEISNETKSIEEEQKKETAtehvkEETVESVQETDEKQQEnssssQKDNE-N 401
Cdd:PRK00409 502 NIIEEAKKLIGEDKEKL--NELIASLEELERELEQKAEEAEALLKEA-----EKLKEELEEKKEKLQE-----EEDKLlE 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 402 EQKLENSQEPRTQKEEIAETIQEDTEKQQEnnetSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKE 481
Cdd:PRK00409 570 EAEKEAQQAIKEAKKEADEIIKELRQLQKG----GYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKY 645
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 123492947 482 LN-QQKTE--SQNPEQEQNTE----NVQVNEEKQQDTDKETEENKEQTTTVT 526
Cdd:PRK00409 646 LSlGQKGEvlSIPDDKEAIVQagimKMKVPLSDLEKIQKPKKKKKKKPKTVK 697
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
362-685 |
8.12e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 362 EEQKKETATEHVKEETVESVQETDEKQQE---NSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPE 438
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKELLEIQELqekAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 439 PVKEEINDEEQKEISNS-TQNELEPENIPEQEQENQEVTES---VKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKE 514
Cdd:pfam02463 733 KINEELKLLKQKIDEEEeEEEKSRLKKEEKEEEKSELSLKEkelAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 515 TEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAmKEEEERLSKLQAAEIARQEEENRLF 594
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE-ELLQELLLKEEELEEQKLKDELESK 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 595 EEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEEthyiIEPKAEIVKPEEEKIETIFAQE 674
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA----DEKEKEENNKEEEEERNKRLLL 967
|
330
....*....|....*...
gi 123492947 675 KEPEQIE-------EEHK 685
Cdd:pfam02463 968 AKEELGKvnlmaieEFEE 985
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
240-550 |
8.73e-05 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 46.32 E-value: 8.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 240 DNPSSSQTDKDISIHQHPEQTEKEIDSTKTEEKESQKQDNFEKEQKQdHKTETEPSKEQINEVTEISDVKQQENVEISNS 319
Cdd:PRK08581 34 STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFST-IDSSTSDSNNIIDFIYKNLPQTNINQLLTKNK 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 320 NQNHIETeqkseiTTEPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDN 399
Cdd:PRK08581 113 YDDNYSL------TTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPST 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 400 ENEQKleNSQEPRTqkeeiaetiQEDTEKQQENNETSPEPVkeeiNDEEQKEISNSTQNELePENIPEQEQENQEVTESV 479
Cdd:PRK08581 187 SNKQP--NSPKPTQ---------PNQSNSQPASDDTANQKS----SSKDNQSMSDSALDSI-LDQYSEDAKKTQKDYASQ 250
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 123492947 480 KELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGeqeKTIKKEKSK 550
Cdd:PRK08581 251 SKKDKTETSNTKNPQLPTQDELKHKSKPAQSFENDVNQSNTRSTSLFETGPSLSNNDDS---GSFNVVDSK 318
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
180-443 |
1.19e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.19 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 180 DIDATDSNLSSLERK-TKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKK--QKKHKSRGLDNPSSSQTDKDISIHQH 256
Cdd:PTZ00108 1133 DLDKFEEALEEQEEVeEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSsaDKSKKASVVGNSKRVDSDEKRKLDDK 1212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 257 PEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEP 336
Cdd:PTZ00108 1213 PDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRP 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 337 EPIKedniitsqeNIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQqensSSSQKDNENEQKLENSQEPRTQKE 416
Cdd:PTZ00108 1293 DGES---------NGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKK----KSKTRVKQASASQSSRLLRRPRKK 1359
|
250 260
....*....|....*....|....*..
gi 123492947 417 EIAETIQEDTEKQQENNETSPEPVKEE 443
Cdd:PTZ00108 1360 KSDSSSEDDDDSEVDDSEDEDDEDDED 1386
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-668 |
1.65e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 354 SNETKSIEEEQKKETATEHVKEETVESV-QETDEKQQENSSSSQKDNENEQKLENSQEprtQKEEIAETIQEDTEKQQEN 432
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELrKELEELEEELEQLRKELEELSRQISALRK---DLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 433 NETSPEPVKEEINDEEQKEISNSTQNELEpENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNtENVQVNEEKQQDTD 512
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTLLN-EEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 513 KETEEnkeqtTTVTIETPQQNTTENGEQEKTIKKE-KSKEELNEIMRQEVEMSTFLaMKEEEERLSKLQAAEIARQEEEN 591
Cdd:TIGR02168 831 RRIAA-----TERRLEDLEEQIEELSEDIESLAAEiEELEELIEELESELEALLNE-RASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123492947 592 RLfEEKRRENEQklqekikKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEETHyiIEPKAEIVKPEEEKIE 668
Cdd:TIGR02168 905 EL-ESKRSELRR-------ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE--AEALENKIEDDEEEAR 971
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
224-437 |
2.06e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 45.24 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 224 ESDTTKKQKKHKSRGLDNPSSSQTDKDISIHQHPEQTEkEIDSTKTEEKESQKQDNFEKEQKQDHKTE---TEPSKEQIN 300
Cdd:pfam02029 111 ENSSWEKEEKRDSRLGRYKEEETEIREKEYQENKWSTE-VRQAEEEGEEEEDKSEEAEEVPTENFAKEevkDEKIKKEKK 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 301 EVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETKSIEEE-----QKKETAT-EHVK 374
Cdd:pfam02029 190 VKYESKVFLDQKRGHPEVKSQNGEEEVTKLKVTTKRRQGGLSQSQEREEEAEVFLEAEQKLEElrrrrQEKESEEfEKLR 269
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 123492947 375 EETVESVQETDE---------KQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSP 437
Cdd:pfam02029 270 QKQQEAELELEElkkkreerrKLLEEEEQRRKQEEAERKLREEEEKRRMKEEIERRRAEAAEKRQKLPEDSS 341
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
261-583 |
2.09e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 261 EKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEIsnsnqnhieTEQKSEITTEPEPIK 340
Cdd:pfam05483 449 EKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKEL---------TQEASDMTLELKKHQ 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 341 EDNIITSQENIEIsneTKSIEEEQKKETateHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAE 420
Cdd:pfam05483 520 EDIINCKKQEERM---LKQIENLEEKEM---NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILE 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 421 TIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQ--------NELEPENIPEQEQENQEVTESVKELNQQKTESQNP 492
Cdd:pfam05483 594 NKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQlnayeikvNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 493 EQEQNTENVQVNE--EKQQDTDKE-----------TEENKEQTTTVTIETPQQ-NTTENGEQEKTIKKEKSKEELNEIMR 558
Cdd:pfam05483 674 LEEVEKAKAIADEavKLQKEIDKRcqhkiaemvalMEKHKHQYDKIIEERDSElGLYKNKEQEQSSAKAALEIELSNIKA 753
|
330 340
....*....|....*....|....*
gi 123492947 559 QEVEMSTFLAMKEEEERLSKLQAAE 583
Cdd:pfam05483 754 ELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| Granin |
pfam01271 |
Granin (chromogranin or secretogranin); |
281-602 |
2.59e-04 |
|
Granin (chromogranin or secretogranin);
Pssm-ID: 279595 [Multi-domain] Cd Length: 584 Bit Score: 45.02 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 281 EKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQEniEISNETKSI 360
Cdd:pfam01271 37 KKGRKRIKSEERSENYNPYFEVRLLRDLADQSEASHLSSRSRDGLSDEDMQIITEALRQAENEPGGHSR--ENQPYALQV 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQETDEK-QQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKqqenneTSPEP 439
Cdd:pfam01271 115 EKEFKTDHSDDYETQQWEEEKLKHMRFpLRYEENSEEKHSEREGELSEVFENPRSQATLKKVFEEVSRL------DTPSK 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 440 VKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTE-NVQVNEEKQQD----TDKE 514
Cdd:pfam01271 189 QKREKSDEREKSSQESGEDTYRQENIPQEDQVGPEDQEPSEEGEEDATQEEVKRSRPRTHhGRSLPDESSRGgqlgLEEE 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 515 TEENKEQ--------TTTVTIETPQQNTTENGEQEKTIKKEKSKEELNE-----IMRQEVEMSTFLAMKEEEER--LSKL 579
Cdd:pfam01271 269 ASEEEEEygeesrglSAVQTYLLRLVNARGRGRSEKRAERERSEESEEEelkraSPYEELEITANLQIPPSEEErmLKKA 348
|
330 340
....*....|....*....|...
gi 123492947 580 QAAEIARQEEENRLFEEKRRENE 602
Cdd:pfam01271 349 GRSPRGRVDEAGALEALEALEEK 371
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
248-483 |
3.52e-04 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 44.78 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 248 DKDISIHQH-PEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHK---------TET-EPSKE------QINEVTEISDVKQ 310
Cdd:PTZ00341 299 NSDISSFKHiNELKSLEHRAAKAAEAEMKKRAEKPKKKKSKRRgwlccgggdIETvEPQQEepvqdvGEHQINEYGDILP 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 311 QENVEISNSNQNHIET---------EQKSEITTEPEPIKE-------DNIITSQ-ENIEISNETKSIEEEQKKETATEHV 373
Cdd:PTZ00341 379 SLKASINNSAINYYDAvkdgkylddDSSDALYTDEDLLFDlekqkymDMLDGSEdESVEDNEEEHSGDANEEELSVDEHV 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 374 KEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRT-----QKEEIAETIQEDTEKQQENNETSPEPVKEEINDEE 448
Cdd:PTZ00341 459 EEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEPTvadivEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEE 538
|
250 260 270
....*....|....*....|....*....|....*
gi 123492947 449 QKEISNSTQNelepENIPEQEQENQEVTESVKELN 483
Cdd:PTZ00341 539 HVEEEISTAE----EHIEEPASDVQQDSEAAPTIE 569
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
338-543 |
5.81e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 43.42 E-value: 5.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 338 PIKEDNIITSQENIEISNETKSIEEEqKKETATE--HVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQK 415
Cdd:PHA03169 46 PAPPAPTTSGPQVRAVAEQGHRQTES-DTETAEEsrHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTS 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 416 EEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQE 495
Cdd:PHA03169 125 GSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 123492947 496 QntENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKT 543
Cdd:PHA03169 205 Q--SPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGH 250
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
448-648 |
6.48e-04 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 44.01 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 448 EQKEISNSTQNELEPENiPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTI 527
Cdd:PTZ00341 909 DAKDLSGNIAHEINLIN-KELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENV 987
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 528 -ETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAEIARQEEENrlFEEKRRENEQklQ 606
Cdd:PTZ00341 988 eENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEEN--VEENIEENIE--E 1063
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 123492947 607 EKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEE 648
Cdd:PTZ00341 1064 YDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEE 1105
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
383-523 |
8.31e-04 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 43.50 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 383 ETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQ--KEISNSTQNEL 460
Cdd:PRK12903 789 EILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSeiQEAEEEIQNIN 868
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 123492947 461 EPENipeqeqENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTT 523
Cdd:PRK12903 869 ENKN------EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEEA 925
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
352-672 |
9.76e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 352 EISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEdTEKQQE 431
Cdd:PRK03918 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE-LEKRLE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 432 NNETSPE------PVKEEINdEEQKEISNSTQNELEPEnIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNE 505
Cdd:PRK03918 356 ELEERHElyeeakAKKEELE-RLKKRLTGLTPEKLEKE-LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 506 EKQ------QDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEE--LNEIMRQEVEMSTFLAMKEEEERLS 577
Cdd:PRK03918 434 AKGkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKLK 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 578 KLQAAEIARQEEENRLFEEKRRE--------NEQKLQEKIKKLKKQKQIEEQKQVESEKSNIKEEVKIDQINDNKSIEET 649
Cdd:PRK03918 514 KYNLEELEKKAEEYEKLKEKLIKlkgeikslKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 123492947 650 ---------HYI--------IEPKAEIVKPEEEKIETIFA 672
Cdd:PRK03918 594 lkelepfynEYLelkdaekeLEREEKELKKLEEELDKAFE 633
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
269-591 |
1.00e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 43.08 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 269 TEEKESQKQDNFEKEQKQDHKT----ETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPEPIKEDNI 344
Cdd:COG5271 560 EATAEEDEPDEAEAETEDATENadadETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAE 639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 345 ITSQENIEISNET-KSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEiaetiQ 423
Cdd:COG5271 640 PETDASEAADEDAdAETEAEASADESEEEAEDESETSSEDAEEDADAAAAEASDDEEETEEADEDAETASEEAD-----A 714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 424 EDTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQV 503
Cdd:COG5271 715 EEADTEADGTAEEAEEAAEEAESADEEAASLPDEADAEEEAEEAEEAEEDDADGLEEALEEEKADAEEAATDEEAEAAAE 794
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 504 NEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTikKEKSKEELNEIMRQEVEMSTFLAMKEEEERLSKLQAAE 583
Cdd:COG5271 795 EKEKVADEDQDTDEDALLDEAEADEEEDLDGEDEETADEA--LEDIEAGIAEDDEEDDDAAAAKDVDADLDLDADLAADE 872
|
....*...
gi 123492947 584 IARQEEEN 591
Cdd:COG5271 873 HEAEEAQE 880
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
150-436 |
1.02e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 42.85 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 150 IPTNYFSFITKRTQAPDfgNTIDAFGISDNDIDATDSNLSSLERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTK 229
Cdd:PRK08581 17 LPTLTSPTAYADDPQKD--STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 230 KQKKHKSRGLDNPSSSQTDKDISIHQHPEQtekEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQinevteiSDVK 309
Cdd:PRK08581 95 IYKNLPQTNINQLLTKNKYDDNYSLTTLIQ---NLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKND-------TDTQ 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 310 QQENVEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQ 389
Cdd:PRK08581 165 SSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQ 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 123492947 390 ENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQ----EDTEKQQENNETS 436
Cdd:PRK08581 245 KDYASQSKKDKTETSNTKNPQLPTQDELKHKSKPaqsfENDVNQSNTRSTS 295
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
251-669 |
1.08e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 251 ISIHQHPEQTEKEIDSTKTE-EKESQKQDNFEKEQkqdhktetepskeqinevTEISDVKQQENVEISNSNQNHIETEQK 329
Cdd:TIGR00618 303 TQIEQQAQRIHTELQSKMRSrAKLLMKRAAHVKQQ------------------SSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 330 SEITTEPEPIKED--NIITSQENIEISNEtKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSssqkdnENEQKLEn 407
Cdd:TIGR00618 365 TSIREISCQQHTLtqHIHTLQQQKTTLTQ-KLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHA------KKQQELQ- 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 408 sQEPRTQKEE-IAETIQEDTEKQQENNEtSPEPVKEEINDEEQKEISNSTQNE---LEPENIPEQEQENQEVTESVKELN 483
Cdd:TIGR00618 437 -QRYAELCAAaITCTAQCEKLEKIHLQE-SAQSLKEREQQLQTKEQIHLQETRkkaVVLARLLELQEEPCPLCGSCIHPN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 484 QQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENK--EQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEV 561
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 562 EMSTFLAMKEEEERLSKLQAAEIARQEEENRLFEEKRRENEQKLQEKIKKLKKQKQIEE----QKQVESEKSNIKEEVKI 637
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltqERVREHALSIRVLPKEL 674
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 123492947 638 DQINDNKSIEETHYI---------IEPKAEIVKPEEEKIET 669
Cdd:TIGR00618 675 LASRQLALQKMQSEKeqltywkemLAQCQTLLRELETHIEE 715
|
|
| COG5137 |
COG5137 |
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] ... |
316-476 |
1.16e-03 |
|
Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics];
Pssm-ID: 227466 [Multi-domain] Cd Length: 279 Bit Score: 42.29 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 316 ISNSNQNHIETEQKSEITTEPEPIKEDNIITSQENIEISNETKSI-----EEEQKKETATEHVKEETVESVQETDEKQQE 390
Cdd:COG5137 112 YVNNEYPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIvwdndEDNDEAPPAQPDVDNEEEERLEESDGREEE 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 391 --NSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQ 468
Cdd:COG5137 192 edEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEES 271
|
....*...
gi 123492947 469 EQENQEVT 476
Cdd:COG5137 272 PAKKQKVE 279
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
385-556 |
1.31e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 42.85 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 385 DEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQ--QENNETSPEpvkEEINDEEQKEISNSTQNElep 462
Cdd:PRK08581 33 DSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKfsTIDSSTSDS---NNIIDFIYKNLPQTNINQ--- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 463 ENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEK 542
Cdd:PRK08581 107 LLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPST 186
|
170
....*....|....
gi 123492947 543 TIKKEKSKEELNEI 556
Cdd:PRK08581 187 SNKQPNSPKPTQPN 200
|
|
| MDN1 |
COG5271 |
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal ... |
164-554 |
2.58e-03 |
|
Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444083 [Multi-domain] Cd Length: 1028 Bit Score: 41.92 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 164 APDFGNTIDAFGISDNDIDATDSNLSSLERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPS 243
Cdd:COG5271 255 TESAGATAEVGGTPDTDDEATDDADGLEAAEDDALDAELTAAQAADPESDDDADDSTLAALEGAAEDTEIATADELAAAD 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 244 SSQTDKDISIHQHPEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNH 323
Cdd:COG5271 335 DEDDDDSAAEDAAEEAATAEDSAAEDTQDAEDEAAGEAADESEGADTDAAADEADAAADDSADDEEASADGGTSPTSDTD 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 324 IETEQKSEITTEPEPIKEDNIITSQENIEIS-NETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENE 402
Cdd:COG5271 415 EEEEEADEDASAGETEDESTDVTSAEDDIATdEEADSLADEEEEAEAELDTEEDTESAEEDADGDEATDEDDASDDGDEE 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 403 QKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISN-----STQNELEPENIPEQEQENQEVTE 477
Cdd:COG5271 495 EAEEDAEAEADSDELTAEETSADDGADTDAAADPEDSDEDALEDETEGEENApgsdqDADETDEPEATAEEDEPDEAEAE 574
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 123492947 478 SVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELN 554
Cdd:COG5271 575 TEDATENADADETEESADESEEAEASEDEAAEEEEADDDEADADADGAADEEETEEEAAEDEAAEPETDASEAADED 651
|
|
| DMP1 |
pfam07263 |
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ... |
237-457 |
2.75e-03 |
|
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.
Pssm-ID: 462128 [Multi-domain] Cd Length: 519 Bit Score: 41.45 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 237 RGLDNPSSSQTDKDISIHQHPEQTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEP---SKEQINEVTEISDVKQQEN 313
Cdd:pfam07263 278 RGELDDSNTMEEVKSDSTESTSSKEAGLSQSREDSKSESQEDSEESQSQEDSQNSQDPsseSSQEADLPSQESSSESQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 314 VEISNSNQNHIETEQKSEITTEPEPIKEDNIITSQenieiSNETKSIEEEQKKETAtehvkeETVESVQETDEKQQENSS 393
Cdd:pfam07263 358 VVSESRGDNPDNTSSSEEDQEDSDSSEEDSLSTFS-----SSESESREEQADSESN------ESLRSSEESPESSEDENS 426
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 123492947 394 SSQKDNENEQKLENSQEPRTQKEEIAETiQEDTEKQQENNETSpepvkeeindeeqKEISNSTQ 457
Cdd:pfam07263 427 SSQEGLQSHSASTESQSEESQSEQDSQS-EEDDESDSQDSSRS-------------KEDSNSTE 476
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
362-482 |
3.37e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.95 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 362 EEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVK 441
Cdd:PRK09510 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 123492947 442 EEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKEL 482
Cdd:PRK09510 147 AKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKA 187
|
|
| PTZ00372 |
PTZ00372 |
endonuclease 4-like protein; Provisional |
186-355 |
3.83e-03 |
|
endonuclease 4-like protein; Provisional
Pssm-ID: 240388 Cd Length: 413 Bit Score: 40.86 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 186 SNLSSLERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKsrgLDNPSSSQTDKDISihqhpEQTEKEID 265
Cdd:PTZ00372 12 FSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKED---KNNESKKKSEKKKK-----KKKEKKEP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 266 STKTEEKESQKQDNFEKEQK-----QDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQ-----------K 329
Cdd:PTZ00372 84 KSEGETKLGFKTPKKSKKTKkkppkPKPNEDVDNAFNKIAELAEKSNVYIGAHVSASGGVDNSPINAYniagqafalflK 163
|
170 180
....*....|....*....|....*.
gi 123492947 330 SEITTEPEPIKEDNIITSQENIEISN 355
Cdd:PTZ00372 164 NQRTWNSPPLSDETIDKFKENCKKYN 189
|
|
| DUF612 |
pfam04747 |
Protein of unknown function, DUF612; This family includes several uncharacterized proteins ... |
187-562 |
3.97e-03 |
|
Protein of unknown function, DUF612; This family includes several uncharacterized proteins from Caenorhabditis elegans.
Pssm-ID: 282585 [Multi-domain] Cd Length: 511 Bit Score: 41.20 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 187 NLSSLERKTKKEPQTFSLTKEQPQEPQKKHHKSKGKHESDTTKKQKKHKSRGLDNPSSSQTDKDISIHQHPEQTEKEIDS 266
Cdd:pfam04747 22 NLGRVAKSQRNQFRQWLLTAVLPNSINDQRKEAFASLELTEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 267 TKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNhIETEQKSEITTEPEPIKEDNIIT 346
Cdd:pfam04747 102 ARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEK-AEKAEKTKKASTPAPVEEEIVVK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 347 SQENieisNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDT 426
Cdd:pfam04747 181 KVAN----DRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQE 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 427 EKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKE-LNQQKTESQNPEQEQNTENVQVNE 505
Cdd:pfam04747 257 KKNKKNKRKSESENVPAASETPVEPVVETTPPASENQKKNKKDKKKSESEKVVEEpVQAEAPKSKKPTADDNMDFLDFVT 336
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 123492947 506 EKQQDTDKETEENKEQTTTVtIETPQQNTTENG------EQEKTIKKEKSKEELNEIMRQEVE 562
Cdd:pfam04747 337 AKEEPKDEPAETPAAPVEEV-VENVVENVVEKSttppatENKKKNKKDKKKSESEKVTEQPVE 398
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
282-670 |
4.86e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 282 KEQKQDHKTETEPSKEQINEVTE-ISDVKQQENVEISNSNQNHIETEQKseiTTEPEPIKEDNIITSQENIEISNETKSI 360
Cdd:TIGR04523 320 EKKLEEIQNQISQNNKIISQLNEqISQLKKELTNSESENSEKQRELEEK---QNEIEKLKKENQSYKQEIKNLESQINDL 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 361 EEEQKKETATEHVKEETVESVQ-ETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETspep 439
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQqEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKV---- 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 440 VKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENVQVnEEKQQDTDKETEENK 519
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK-ESKISDLEDELNKDD 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 520 EQTTTVTIETPQQNTTENGEQEKTIKK--EKSKEELNEIMRQevemstflaMKEEEERLSKLQAAEIARQEEENRLFEEK 597
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKslKKKQEEKQELIDQ---------KEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 123492947 598 RRENEQKLQekikklkkqkqieEQKQVESEKSNIKEEVKIDQINDNKSIEETHYIIEPKAEIVKPEEEKIETI 670
Cdd:TIGR04523 623 KKENEKLSS-------------IIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELM 682
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
318-668 |
4.92e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 318 NSNQNHIETEQKSEITTEPEPIKEDNIItsQENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSSSQK 397
Cdd:PTZ00121 1021 NQNFNIEKIEELTEYGNNDDVLKEKDII--DEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFG 1098
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 398 DNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIpeQEQENQEVTE 477
Cdd:PTZ00121 1099 KAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKA--EEARKAEDAK 1176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 478 SVKELNQQKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIM 557
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 558 RQEVEMSTFL----AMKEEEERlsklqAAEIARQEEENRLFEEKRRENEQKLQEKIKKLKKQKQIEEQKQVESEKSNIK- 632
Cdd:PTZ00121 1257 FEEARMAHFArrqaAIKAEEAR-----KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKa 1331
|
330 340 350
....*....|....*....|....*....|....*.
gi 123492947 633 EEVKIDQINDNKSIEETHYIIEPKAEIVKPEEEKIE 668
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
364-500 |
5.44e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.79 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 364 QKKETATEHVKEETVESVQETDEKQQEnssssQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPV--- 440
Cdd:PRK10811 645 QAQQQTAETRESQQAEVTEKARTQDEQ-----QQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVqpr 719
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 123492947 441 --------KEEINDEEQKEISNSTQNELEPENIPEQEqENQEVTESVKELNQQKTESQNPEQEQNTEN 500
Cdd:PRK10811 720 rkqrqlnqKVRIEQSVAEEAVAPVVEETVAAEPVVQE-VPAPRTELVKVPLPVVAQTAPEQDEENNAE 786
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-550 |
5.47e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 259 QTEKEIDSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENV------------EISNSNQNHIET 326
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVrlqdlteklseaEDMLACEQHALL 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 327 EQKSEITTEPEPIKEDNIIT-----------------SQENIEIS------NETKSIEEEQKKETATEHVKEETVESVQE 383
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSqelalkltalhalqltlTQERVREHalsirvLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 384 TDEKQQENSSSSQKDNENEQKL-ENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQK------EISNST 456
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDREFnEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNneevtaALQTGA 778
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 457 QNELEPENIPEQEQENQEVTESVKELNQQ-KTESQNPEQEQNTENVQVNEEKQQdTDKETEENkeQTTTVTIETPQQNTT 535
Cdd:TIGR00618 779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEiGQEIPSDEDILNLQCETLVQEEEQ-FLSRLEEK--SATLGEITHQLLKYE 855
|
330
....*....|....*
gi 123492947 536 ENGEQEKTIKKEKSK 550
Cdd:TIGR00618 856 ECSKQLAQLTQEQAK 870
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
265-521 |
5.52e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 40.62 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 265 DSTKTEEKESQKQDNFEKEQKQDHKTETEPSKEQINEVTEISDVKQQENVEISNSNQNHIETEQKSEITTEPEPIKEDNI 344
Cdd:pfam02029 66 DRTAKREERRQKRLQEALERQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQENKW 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 345 ITS--QENIEISNETKSIEEEQKKETATEHVKEETVESVQETDEKQQENSSS-SQKDNENEQKLENSQEPRTQKEEIAET 421
Cdd:pfam02029 146 STEvrQAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFlDQKRGHPEVKSQNGEEEVTKLKVTTKR 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 422 IQEDTEKQQENNETSPEPVKEEINDEEQKEisnsTQNELEPENIPEQEQENQEVTESVKELNQQKTESQNPEQEQNTENV 501
Cdd:pfam02029 226 RQGGLSQSQEREEEAEVFLEAEQKLEELRR----RRQEKESEEFEKLRQKQQEAELELEELKKKREERRKLLEEEEQRRK 301
|
250 260
....*....|....*....|
gi 123492947 502 QVNEEKQQDTDKETEENKEQ 521
Cdd:pfam02029 302 QEEAERKLREEEEKRRMKEE 321
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
362-527 |
5.81e-03 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 40.93 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 362 EEQKKETATEHVKEETVESVQETDEKQQENSSSSQKDNENEQKLENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVK 441
Cdd:PTZ00341 420 EKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEPTV 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 442 EEINDEEQKEisnstqnelepENIPEQEQENQEVTESVKElnqqKTESQNPEQEQNTENVQVNEEKQQDTDKETEENKEQ 521
Cdd:PTZ00341 500 ADIVEQETVD-----------EHVEEPAVDENEEQQTADE----HVEEPTIAEEHVEEEISTAEEHIEEPASDVQQDSEA 564
|
....*.
gi 123492947 522 TTTVTI 527
Cdd:PTZ00341 565 APTIEI 570
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
408-668 |
7.93e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 40.36 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 408 SQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEINDEEQKEISNSTQNELEPENIPEQEQENQEVTESVKELNQQKT 487
Cdd:TIGR00927 631 SKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGET 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 488 ESQNPEQEQNTENVQVNEEKQQDTDKETEEnKEQTTTVTIETPQQNTTENGEQEKTIKKEKSKEELNEIMRQEVEMSTFL 567
Cdd:TIGR00927 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEE-VEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 568 AMKEEEErlsKLQAAEIARQEEENRLFEEKRRENEQKLQekikklkkqkqieEQKQVESEKSNIKEEVKIDQINDNKSIE 647
Cdd:TIGR00927 790 EMKGDEG---AEGKVEHEGETEAGEKDEHEGQSETQADD-------------TEVKDETGEQELNAENQGEAKQDEKGVD 853
|
250 260
....*....|....*....|.
gi 123492947 648 ETHYIIEPKAEIVKPEEEKIE 668
Cdd:TIGR00927 854 GGGGSDGGDSEEEEEEEEEEE 874
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
257-458 |
9.59e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.02 E-value: 9.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 257 PEQTEKEIDSTKTEEKESQKQD--NFEKEQKQDHKTETEPSKEQIN-EVTEISD-------VKQQENVEiSNSNQNHIET 326
Cdd:PRK10811 584 EETKPQEQPAPKAEAKPERQQDrrKPRQNNRRDRNERRDTRDNRTRrEGRENREenrrnrrQAQQQTAE-TRESQQAEVT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123492947 327 EQ-KSEITTEPEPIKEDNIITSQENIEISNETKSIEEEQKKETATEhVKEETVESVQETDEKQQENSSSSQKDNENEQKL 405
Cdd:PRK10811 663 EKaRTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETE-QEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVA 741
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 123492947 406 ENSQEPRTQKEEIAETIQEDTEKQQENNETSPEPVKEEindEEQKEISNSTQN 458
Cdd:PRK10811 742 PVVEETVAAEPVVQEVPAPRTELVKVPLPVVAQTAPEQ---DEENNAENRDNN 791
|
|
| |
