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Conserved domains on  [gi|1234904748|gb|ASU84143|]
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hypothetical protein CDO52_16310 [Nocardiopsis gilva YIM 90087]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2332 super family cl01837
Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of ...
 90-146 9.29e-16

Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of hypothetical bacterial proteins have no known function.


The actual alignment was detected with superfamily member COG4427:

Pssm-ID: 470367  Cd Length: 350  Bit Score: 73.01  E-value: 9.29e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1234904748  90 PLDINDPDDTRWLHSLIWPEHHQRTKRLDAALTIARADPPHLIQGDLNQRLPDAIAQ 146
Cdd:COG4427   206 PLDLADPDDRLWLRAYVWPDQPERLARLEAAIALARADPPRLVRGDAVDWLPERLAE 262
 
Name Accession Description Interval E-value
COG4427 COG4427
Uncharacterized conserved protein, DUF2332 domain [Function unknown];
90-146 9.29e-16

Uncharacterized conserved protein, DUF2332 domain [Function unknown];


Pssm-ID: 443541  Cd Length: 350  Bit Score: 73.01  E-value: 9.29e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1234904748  90 PLDINDPDDTRWLHSLIWPEHHQRTKRLDAALTIARADPPHLIQGDLNQRLPDAIAQ 146
Cdd:COG4427   206 PLDLADPDDRLWLRAYVWPDQPERLARLEAAIALARADPPRLVRGDAVDWLPERLAE 262
DUF2332 pfam10094
Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of ...
 90-146 1.13e-15

Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 431048  Cd Length: 335  Bit Score: 72.66  E-value: 1.13e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1234904748  90 PLDINDPDDTRWLHSLIWPEHHQRTKRLDAALTIARADPPHLIQGDLNQRLPDAIAQ 146
Cdd:pfam10094 195 PLDVTDPDDALWLRAYVWPDQPERLARLEAALALARKDPPPLVRGDAVDWLPAALAE 251
 
Name Accession Description Interval E-value
COG4427 COG4427
Uncharacterized conserved protein, DUF2332 domain [Function unknown];
90-146 9.29e-16

Uncharacterized conserved protein, DUF2332 domain [Function unknown];


Pssm-ID: 443541  Cd Length: 350  Bit Score: 73.01  E-value: 9.29e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1234904748  90 PLDINDPDDTRWLHSLIWPEHHQRTKRLDAALTIARADPPHLIQGDLNQRLPDAIAQ 146
Cdd:COG4427   206 PLDLADPDDRLWLRAYVWPDQPERLARLEAAIALARADPPRLVRGDAVDWLPERLAE 262
DUF2332 pfam10094
Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of ...
 90-146 1.13e-15

Uncharacterized protein conserved in bacteria (DUF2332); Members of this family of hypothetical bacterial proteins have no known function.


Pssm-ID: 431048  Cd Length: 335  Bit Score: 72.66  E-value: 1.13e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1234904748  90 PLDINDPDDTRWLHSLIWPEHHQRTKRLDAALTIARADPPHLIQGDLNQRLPDAIAQ 146
Cdd:pfam10094 195 PLDVTDPDDALWLRAYVWPDQPERLARLEAALALARKDPPPLVRGDAVDWLPAALAE 251
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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