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Conserved domains on  [gi|1233055148|gb|ASU43955|]
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VP5 [Infectious pancreatic necrosis virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Birna_VP5 super family cl03857
Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found ...
 1-133 1.08e-47

Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found in RNA segment A. The function of this small viral protein is unknown. The proteins are about 150 amino acids long and contain several conserved histidines and cysteines that might form a zinc binding site (Bateman A pers. obs.).


The actual alignment was detected with superfamily member pfam03042:

Pssm-ID: 281092  Cd Length: 139  Bit Score: 150.25  E-value: 1.08e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233055148   1 MQDEHKQGNRNLLEIHYASRDWTSK---HPGRHNGETHLKTRDLVIQLR--GLRIRKWHSCLFPWGTRLTDRCTLQMERE 75
Cdd:pfam03042   1 MDDEHAQGNPNDCEIHTAPRDAANKtgvHSGRHNREAHSKTRDLDIQFDcgGHRIRKWANCLFPRLPWINCGCPLHTAEE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1233055148  76 PDGAGFRPVAGDVAGPEESLQLREADLKEIRHSKL-HTTGRSLCSERDAQRCHLRRQSV 133
Cdd:pfam03042  81 PDGLQIRPDAPDCPEPKEGIQLLEADESEIRHPELkHSPWWRLCTKWDHERCDLPRKPE 139
 
Name Accession Description Interval E-value
Birna_VP5 pfam03042
Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found ...
 1-133 1.08e-47

Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found in RNA segment A. The function of this small viral protein is unknown. The proteins are about 150 amino acids long and contain several conserved histidines and cysteines that might form a zinc binding site (Bateman A pers. obs.).


Pssm-ID: 281092  Cd Length: 139  Bit Score: 150.25  E-value: 1.08e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233055148   1 MQDEHKQGNRNLLEIHYASRDWTSK---HPGRHNGETHLKTRDLVIQLR--GLRIRKWHSCLFPWGTRLTDRCTLQMERE 75
Cdd:pfam03042   1 MDDEHAQGNPNDCEIHTAPRDAANKtgvHSGRHNREAHSKTRDLDIQFDcgGHRIRKWANCLFPRLPWINCGCPLHTAEE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1233055148  76 PDGAGFRPVAGDVAGPEESLQLREADLKEIRHSKL-HTTGRSLCSERDAQRCHLRRQSV 133
Cdd:pfam03042  81 PDGLQIRPDAPDCPEPKEGIQLLEADESEIRHPELkHSPWWRLCTKWDHERCDLPRKPE 139
 
Name Accession Description Interval E-value
Birna_VP5 pfam03042
Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found ...
 1-133 1.08e-47

Birnavirus VP5 protein; Birnaviruses are ds RNA viruses. Non structural protein VP5 is found in RNA segment A. The function of this small viral protein is unknown. The proteins are about 150 amino acids long and contain several conserved histidines and cysteines that might form a zinc binding site (Bateman A pers. obs.).


Pssm-ID: 281092  Cd Length: 139  Bit Score: 150.25  E-value: 1.08e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1233055148   1 MQDEHKQGNRNLLEIHYASRDWTSK---HPGRHNGETHLKTRDLVIQLR--GLRIRKWHSCLFPWGTRLTDRCTLQMERE 75
Cdd:pfam03042   1 MDDEHAQGNPNDCEIHTAPRDAANKtgvHSGRHNREAHSKTRDLDIQFDcgGHRIRKWANCLFPRLPWINCGCPLHTAEE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1233055148  76 PDGAGFRPVAGDVAGPEESLQLREADLKEIRHSKL-HTTGRSLCSERDAQRCHLRRQSV 133
Cdd:pfam03042  81 PDGLQIRPDAPDCPEPKEGIQLLEADESEIRHPELkHSPWWRLCTKWDHERCDLPRKPE 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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