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Conserved domains on  [gi|1232018248|gb|ASU10959|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Zosterops ceylonensis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.56e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.56e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.56e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.56e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 8.86e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 132.55  E-value: 8.86e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  90 ---THPTSSLILTSALAM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPITLLFMTSPSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK-LTLLNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRKgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1232018248 226 --NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:COG1007   351 aeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.46e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 114.72  E-value: 1.46e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  23 SNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  91 HPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT------LLMCMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIA----YNPKLTLLNFYLYTLMTTAVFL-----TLNTIKTPNLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1232018248 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATA 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-276 2.43e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.88  E-value: 2.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  93 TSSLILT------------SALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLP---PITLLFMT-----SPSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCmAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YTLMTTAVFLTLNTIKTPN-- 226
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1232018248 227 ----LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLY 404
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.56e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 461.98  E-value: 3.56e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTII 346
Cdd:MTH00112  321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 7.36e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 392.63  E-value: 7.36e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSlNPTLLMCMAVL 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                         330       340
                  ....*....|....*....|....*..
gi 1232018248 321 TSTT-IAILMVLSTTLLPISPMITTII 346
Cdd:MTH00135  320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.53e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 386.58  E-value: 1.53e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                         330       340
                  ....*....|....*....|....*.
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTII 346
Cdd:MTH00070  321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 5.95e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 352.23  E-value: 5.95e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWHINK 319
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                         330       340
                  ....*....|....*....|....*..
gi 1232018248 320 PTSTT-IAILMVLSTTLLPISPMITTI 345
Cdd:MTH00105  320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.18e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 294.18  E-value: 3.18e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 TGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHINKP 320
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                         330       340
                  ....*....|....*....|....*.
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTII 346
Cdd:MTH00200  321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 7-267 7.44e-84

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 257.55  E-value: 7.44e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   7 LIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  87 TQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVLSTALGG 166
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 167 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSLNAMLFL 246
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260
                  ....*....|....*....|.
gi 1232018248 247 TLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISL 267
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 6.41e-61

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 198.12  E-value: 6.41e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  81 tgqwdITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTspsLNPTLLMCMAVL 160
Cdd:MTH00160   81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQwhINKP 320
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310

                         330       340
                  ....*....|....*....|....*
gi 1232018248 321 TSTTIAILMVLSTTLLPISPMITTI 345
Cdd:MTH00160  311 FSLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-276 4.39e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 177.77  E-value: 4.39e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   5 AKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  85 DitqlthptSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMC-MAVLSTA 163
Cdd:MTH00144   85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLmtTWTKIPSLNAM 243
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1232018248 244 LFLT-LLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00144  235 SIISlLLSLGGLPPFLGFCSKLLVLISSMESSPL 268
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-276 3.46e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 3.46e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   7 LIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  87 TQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVLSTALGG 166
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 167 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKIPSLNAMLFL 246
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270
                  ....*....|....*....|....*....|
gi 1232018248 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMI 272
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-270 5.12e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.97  E-value: 5.12e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   8 IFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  88 qLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLfmTSPSLNPTLLMCMAVLSTALGGW 167
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 168 MGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTlMTTWTKIPSLNAMLF-L 246
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLgL 231

                         250       260
                  ....*....|....*....|....
gi 1232018248 247 TLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197  232 SFLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-276 8.86e-35

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 132.55  E-value: 8.86e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  90 ---THPTSSLILTSALAM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPITLLFMTSPSLNP---T 152
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK-LTLLNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRKgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1232018248 226 --NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:COG1007   351 aeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 4.24e-33

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 125.91  E-value: 4.24e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  79 WHTGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNptLLMCMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 159 VLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYTLMTTAVF---LTLNTIKTPnLSTLM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1232018248 232 TTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 1.29e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 117.81  E-value: 1.29e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   8 IFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  87 ----TQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNpTLLMCmAVLST 162
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLIC-AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 163 ALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYTLMTTAVFLTLNTIK--TPNLSTLMTTWTK 236
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKltKGLIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1232018248 237 IPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-281 1.46e-29

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 114.72  E-value: 1.46e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  23 SNHWIMAWAGLEINTLAILPMI-SKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  91 HPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT------LLMCMAVLSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIA----YNPKLTLLNFYLYTLMTTAVFL-----TLNTIKTPNLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1232018248 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATA 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 1.49e-28

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 115.30  E-value: 1.49e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  14 LLGTTITISSNHWIMAWAGLEINTLA--ILPMISKsHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH 91
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAK 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  92 PTSS------------LILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKL----PPITLLFMTSPSLNPT--- 152
Cdd:PRK05777  192 ALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqq 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTL--LNFYL--YTLMTTAVFLTLNTIKTPNL- 227
Cdd:PRK05777  272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKGGe 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1232018248 228 STLMTTWTKI----PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK05777  352 AESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-276 2.43e-26

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 108.88  E-value: 2.43e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  14 LLGTTITISSNHWIMAWAGLEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  93 TSSLILT------------SALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLP---PITLLFMT-----SPSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCmAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YTLMTTAVFLTLNTIKTPN-- 226
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKde 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1232018248 227 ----LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLY 404
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.53e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 97.14  E-value: 2.53e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  93 TSSL----------ILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVM-KLPP------ITLLFMTSPSLNP-TLL 154
Cdd:COG0651   196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 155 MCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLT----LNTIKTPN 226
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1232018248 227 LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 6.57e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 87.61  E-value: 6.57e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   3 PQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSV---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  74 SMTNAWHTGQ----WDITQLTHPTSS----------LILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 140 TLLfmTSPSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLM----TTAV 215
Cdd:MTH00198  347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALAS 424

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1232018248 216 FLTLNTIK---------------------TPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198  425 FTVICTLEefgtrtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-263 5.38e-18

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 84.67  E-value: 5.38e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   1 MTPQAKLIFIISLLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHP-RSVEAATKYFLTQAAASALVL--FSSM-- 75
Cdd:CHL00049  108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  76 TNAWHTGQWDI------TQLTHPTSSLI----LTSALAMKLGLAPFHFWFPEVLQGSPL-----------TTGLLLSTVM 134
Cdd:CHL00049  188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 135 klppITLLFMTSPSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK------LTLLNFYL 207
Cdd:CHL00049  268 ----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYI 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1232018248 208 YTLMTTAVFLTLNTIKT--PNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049  344 FMNLGTFACIVLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 5.78e-16

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 78.55  E-value: 5.78e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  50 PRSVEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTHPTSSLI----LTSALAM---------KLGLAPFHFWF 115
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspsLGLALALvfviagiafKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 116 PEVLQGSPLTTGLLLSTVMKLP----PITLLFMTSPSLNP---TLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 189 WMAI--IIAYNPKLTLLNFYL--YTLMTTAVF--LTLNTIKT--PNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGF 260
Cdd:PRK02504  314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFacVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393


                  ...
gi 1232018248 261 LPK 263
Cdd:PRK02504  394 FGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-282 8.00e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 68.95  E-value: 8.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  38 LAILPM---ISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTHPTSSLILTS--------ALAM 104
Cdd:COG1008   142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLllflaffiAFAV 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 105 KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMK--------------LPPITLLFMTspslnptLLMCMAVLSTALGGWMGL 170
Cdd:COG1008   222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfalplFPEASAYFAP-------LLAALGVIGIIYGALVAL 294

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 171 NQTQIRKILAFSSISHLGWMAI-IIAYNPK------LTLLNFylyTLMTTAVFLTLNTI----KTPNLSTLMTTWTKIPS 239
Cdd:COG1008   295 AQTDLKRLIAYSSVSHMGFVLLgIFALNPLglqgavLQMVSH---GLITAALFLLVGVLydrtHTRDIADLGGLAKRMPV 371

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 1232018248 240 LNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG1008   372 LAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAA 414
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-282 8.38e-12

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 66.17  E-value: 8.38e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  34 EINTLAILPMISKSHHpRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHPTSSLI----LTSAL 102
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 103 AMKLGLAPFHFWFPEVLQGSPLTTGLLLS------------TVMKLPPITLLF------MTSPSLNpTLLMCMAVLSTAL 164
Cdd:PRK08668  207 VAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygflLVLYVLPGTKLFsefgtyRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLT----LLNFYLYTLMTTAVFLTLNTI----KTPNLSTLMTTWTK 236
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1232018248 237 IPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.98e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 64.73  E-value: 1.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  33 LEINTLAILPMIS-KSHHPRSVEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSSL-ILTSA 101
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 102 LAMKLGLAPFHFWFPEVLQGSP--LTTGLLLSTVMKLPPITLLFMT--SPSLNPT----LLMCMAVLSTALGGWMGLNQT 173
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 174 QIRKILAFSSISHLGWMAI-----IIAY-NPKLT----------LLNFYLYTLMTTAVFLT----LNTIKTPNLSTLMTT 233
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1232018248 234 WTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376  390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-282 9.64e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.59  E-value: 9.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  97 ILTSALAMKLGLAPFHFWFPEVLQG-SPLTTGLLLSTVMKLPP----------ITLLFMTSPSLNpTLLMCMAVLSTALG 165
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLG-WLLAVLALLSMLVG 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 166 GWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YTLMTTAVFLTLNTI----KTPNLSTLMTTWTKI 237
Cdd:PRK08375  286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRM 365

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1232018248 238 PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08375  366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 4.62e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 60.52  E-value: 4.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  96 LILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITL------------LFMTSPSLNpTLLMCMAVLSTA 163
Cdd:PRK12662  213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWT 235
Cdd:PRK12662  292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1232018248 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662  372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.51e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 58.80  E-value: 1.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  50 PRSVEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPTSS-------LILTSALAMKLGLAPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 121 GSPLTTGLLLSTVM-KLPPITLLFMTSPsLNP-------TLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 193 IIAYNPKLTLLNFYLYT----LMTTAVFLTLNTI----KTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ....
gi 1232018248 265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 4.25e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 58.01  E-value: 4.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  96 LILTSALAmKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLL------FMTSPSLNPTLLMcMAVLSTALGGWMG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 170 LNQTQIRKILAFSSISHLGWMAIIIAYNPK------LTLLnfYLYTLMTTAVFLTLNTIK----TPNLSTLMTTWTKIPS 239
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDhstgTRDIRKLSGLGRRQPV 363

                         170       180
                  ....*....|....*....|....
gi 1232018248 240 LNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644  364 LAVVAALAAASMAGLPPLLGFVAK 387
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 4.87e-09

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 57.27  E-value: 4.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  92 PTSSLILTSALAMKLGLAPFhFWFPEVLQGSPLTTGLLLSTVMKLPPI-------TLLFMTSPSLNPTLLMCMAVLSTAL 164
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYLYTLMT--TAVFLTLNTIK----TPNLSTLMTTWTK 236
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVrltgYRSLQYLGGLYRK 365

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1232018248 237 IPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663  366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-279 6.88e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.86  E-value: 6.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   8 IFIISLLLgttiTISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSS----------MTN 77
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  78 AWHTGQW-DITQLTHPTSSLILTSALAM-------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMkLPPITLLFMTS--- 146
Cdd:PRK06458  192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGVL-LNVALYAVLRYyil 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 147 ------PSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLM----TTAVF 216
Cdd:PRK06458  271 idaaigSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIF 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1232018248 217 LT----LNTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK06458  351 FAsgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIA 417
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-270 8.83e-09

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 56.70  E-value: 8.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPTSSLILTSALAM------KLGLAPFHFWFP 116
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 117 EVLQG-SPLTTgLLLSTVMKLPPITLLFMTSP--SLNPTLLMCMAV--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009   236 DAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYM 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 191 AIIIAynpkLTLLNFYLYTLMTTAVF------------LTLNTIKTPNLSTLmttWTKIPSLNAMLFLTLLSLAGLPPLT 258
Cdd:COG1009   315 FLALG----VGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFA 387

                         250
                  ....*....|..
gi 1232018248 259 GFLPKWLIIQEL 270
Cdd:COG1009   388 GFFSKEAILEAA 399
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.57e-08

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 55.81  E-value: 1.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  34 EINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSSLILTSALAMKLGL 108
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 109 A------PFHFWFPEVLQGSPLTTGLLLSTVMKLPPITL------LFMTSPSLNP--TLLMCMAVLSTALGGWMGLNQTQ 174
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 175 IRKILAFSSISHLGWMAIIIAYNPKLTL-------LNFYLYTlmtTAVFLTLNTI----KTPNLSTLMTTWTKIPSLNAM 243
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366

                         250       260
                  ....*....|....*....|....*
gi 1232018248 244 LFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277  367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-268 4.62e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 54.57  E-value: 4.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 103 AMKLGLAPFHFWFPEVLQGSP---------LTTGLLLSTVMKLppITLLFMTSPSLNPTLLMCMAVLSTALGGWMGLNQT 173
Cdd:PRK07691  220 ATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIART--FTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYF 297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 174 QIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTI----KTPNL---STLMTTWtkiPSLNA 242
Cdd:PRK07691  298 DIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLLIGIMikitGTTDLkkmGGLIKRY---PVLGW 374

                         170       180
                  ....*....|....*....|....*.
gi 1232018248 243 MLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691  375 MFFIAALSLAGIPPLSGFYGKFFIVE 400
PRK12650 PRK12650
DUF4040 family protein;
98-263 5.03e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 54.66  E-value: 5.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  98 LTSALAMKLGLA--------PFHFWFPEVLQG-SPLTTGLLLSTVMKlPPITLLFMTSPSL--NPT---LLMCMAVLSTA 163
Cdd:PRK12650  206 LTTVVAVLIAVAaftksaqfPFHFWLPEAMAAiTPVSAFLHAAAVVK-AGIYLLLRFSPVFhdVAVwnwLLIIVGMITAL 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TPNLSTLMTTWT 235
Cdd:PRK12650  285 MGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIRRLGSLWR 364

                         170       180
                  ....*....|....*....|....*...
gi 1232018248 236 KIPSLNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650  365 RMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 1.25e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 53.38  E-value: 1.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 110 PFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT-----LLMCMAVLSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12647  213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 185 SHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPP 256
Cdd:PRK12647  293 SALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                         170
                  ....*....|
gi 1232018248 257 LTGFLPKWLI 266
Cdd:PRK12647  373 LFGFLAKELI 382
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 2.75e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 51.89  E-value: 2.75e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  96 LILTSALAMKLGLAPFHFWFPEVLQGSP-LTTGL---LLSTVMKLPPI---TLLFmTSPSLNpTLLMCMAVLSTALGGWM 168
Cdd:PRK12665  213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVfagLLTKVGVYAIIrthTLLF-PGGGLD-TLLMVVALLTMVVGILG 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 169 GLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TPNLSTLMTTWTKIPSL 240
Cdd:PRK12665  291 AIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGLIErqagSSSLRRLGGLAKASPLL 370

                         170       180
                  ....*....|....*....|....*...
gi 1232018248 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665  371 AVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 1.80e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.37  E-value: 1.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  13 LLLGTTITISSNHWIMAWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  87 TQLTHPTS----SLILTSALAM------KLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT---- 152
Cdd:PRK08676  191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1232018248 153 ----LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTL 210
Cdd:PRK08676  271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 15-270 2.47e-06

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 49.02  E-value: 2.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  15 LGTTITISSNHWIMAWAGLEINTLA---ILPMISKSHHPRSVEAATKYFLTqaaasALVLFSSMTNAWHTGQWDITQLTH 91
Cdd:PRK06459   83 LGMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRPAFVFMAFGELST-----VLILAGFAWAFIISGTTNFSYLPS 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  92 PTSSLILTSALAMKLGLAPFHF--WFPEVLQGSPLTTGLLLSTVMKLPPI----TLLFMTSPSLNPTL---LMCMAVLST 162
Cdd:PRK06459  158 PVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilKMTILTQTIPIGYFgltILAIGAFSI 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 163 ALGGWMGLNQTQIRKILAFSSISHLGWM-----AIIIAYNPKLTLLNFYLYTLMT---------TAVFLTLNTIKTPNLS 228
Cdd:PRK06459  238 LFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSIT 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1232018248 229 TLMTTWTKIPSLNAmlFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459  318 YSKKIRNRWIELGL--TLLASSLSGLLPNIGGVASWLLLESL 357
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.80e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 49.06  E-value: 2.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSS---------------LILTSAlAMKLGLAPFH 112
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 113 FWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT-----LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 188 GWMAIIIAYNPK------LTLLNFYLYTLMTTAVFLTL------NTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLP 255
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                  ....*...
gi 1232018248 256 PLTGFLPK 263
Cdd:PRK12649  395 PLNGFLSK 402
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 4.68e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 48.42  E-value: 4.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 105 KLGLapfHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLN--PTLLMCMAV---LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEkaPLTLLIITIfgaLTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 180 AFSSISHLGWMAIIIAY--NPKLTLLNFYLYTLMTTAVFLTLN------TIKTPNLSTLMTTWTKIPSLNAMLFLTLLSL 251
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397

                         170
                  ....*....|....*..
gi 1232018248 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032  398 MGLPYLTGFYSKDLILE 414
PRK12646 PRK12646
DUF4040 family protein;
110-277 9.44e-06

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 47.44  E-value: 9.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 110 PFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT-----LLMCMAVLSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12646  228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 185 SHLGW-MAII-----IAYNPKLTLLNFY-------LYTLMTTAVF---------LTLNTIKTPNLSTLMTTWTKIPSLNA 242
Cdd:PRK12646  308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAGTRDIRILSGMRQLFPKMNL 387

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1232018248 243 MLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIP 277
Cdd:PRK12646  388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLS 422
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 9.50e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 47.01  E-value: 9.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQLTHPTSSLILTSAL----AMKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 124 LTTGLLLSTVMKLPPITL------LFMTSPSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 198 PKLTLLN---------------FYLYTLMTTAVfltlNTIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 1232018248 263 KWLIIQ 268
Cdd:PRK07363  394 EFIVFQ 399
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.61e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.48  E-value: 1.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  33 LEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSSLILTSALAMKLGLAP 110
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 111 FHFWFPEVLQGSPLTTGLLLSTVM---KLPPITLLFMTSPSLNPtLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 188 GWmaIIIAynPKLTLLNFYLYTLMTTAVFLTLNTIKTPNL----STLMTTWTKIPslnamLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07234  282 GF--ILAA--PLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSK 352


                  ....*...
gi 1232018248 264 WLIIQELT 271
Cdd:PRK07234  353 VLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-268 1.85e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 46.22  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 111 FHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAV-----LSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020  229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCS 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 186 HLGWMAIIIAynpkltlLNFY---LYTLMTTAVFLTL----------------NTIKTPNLSTLmttwtkIPSLNAMLFL 246
Cdd:MTH00020  309 QLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagsvihalsdeqDMRKMGGLISF------LPLTYIFFLI 375

                         170       180
                  ....*....|....*....|..
gi 1232018248 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020  376 GSLSLMGFPYLTGFYSKDLILE 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 8-270 2.29e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 46.26  E-value: 2.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   8 IFIISLLL----GTTITISSNHWIMAwagleinTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQ 83
Cdd:PRK08667  119 LFILSMLGvvasANTFSFLFFWEIMA-------LSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGS 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  84 WDITQLTHPTSSLILT-----SALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVM-KLPPITLLFMTSPSLNP-----T 152
Cdd:PRK08667  192 FELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMlKVAVYGLVRFLMDVLSPelwwgV 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMT--TAVFLTLN---------- 220
Cdd:PRK08667  272 LILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLAlgGALFHSLNhalfksllfl 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1232018248 221 -------TIKTPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK08667  352 tagsvvhATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESF 408
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 2.34e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.85  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  55 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPTSSLILTSA-----LAMKLGLAPFHFWFPEV-LQGSP 123
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 124 LTTGLLLSTVMKLPPITLL------FMTSPSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 198 PKLTLLNFYL----YTLMTTAVFLTLNTI--KTPN-----LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473  318 TPLSILAAVFqmisHGLISALLFLLVGVVykKTGSrdvdvLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 2.74e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 45.91  E-value: 2.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  82 GQWDITQLTH----PTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLL-----FMTSPSLNPT 152
Cdd:MTH00207  165 GHWSITNMWQtdmnNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----KTPN 226
Cdd:MTH00207  245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1232018248 227 LSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207  325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-195 3.75e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 45.41  E-value: 3.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLT--HPTSSLILTS------ALAMKLGLAPFHFWFPE------- 117
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 118 ----VLQGSPLTTG---LLLSTVMKLPPITLLFmtSPslnptLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561  218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF--AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290


                  ....*
gi 1232018248 191 AIIIA 195
Cdd:PRK12561  291 LLGIA 295
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-195 7.80e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 44.42  E-value: 7.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  50 PRSVEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPTSS--------LILTSALAMKLGLAPFHFWFPE 117
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 118 VLQGSPLTTGLLLSTVM-----------KLPpitlLFMTSPSLNPTLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                  ....*....
gi 1232018248 187 LGWMAIIIA 195
Cdd:PRK05846  313 MGFVTLGIF 321
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 1.17e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.16  E-value: 1.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1232018248 295 RLAYCATITLPPHTTNHMKQWHINKPTSTT-IAILMVLSTTLLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-267 3.11e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 3.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 101 ALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPITLLFMTSP-------SLNPTLLmCMAVLSTALGGWMGLNQ 172
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 173 TQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTL---MTTAVFLTLNTIKTPNLSTLMTTWTK-----IPSLNAML 244
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWGTIM 397

                         170       180
                  ....*....|....*....|...
gi 1232018248 245 FLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226  398 IVTSLANVAVPPSGNFIGEYLSI 420
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 5.51e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.74  E-value: 5.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 107 GLAPFHFWFPEVLQGSPLTTGLLLSTV-MKLPPITLLFMTSPSLNPTL-----LMCMAVLSTALGGWMGLNQTQIRKILA 180
Cdd:PRK08042  195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 181 FSSISHLGWMAI--------IIAYNPKLTLLNFY--LY-----TLMTTAVFLTLNTI----KTPNLSTLMTTWTKIPSLN 241
Cdd:PRK08042  275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1232018248 242 AMLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042  355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-197 1.88e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 39.89  E-value: 1.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  75 MTNAW---HTGQWDITQL-------THPTSSLILtsALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFM 144
Cdd:MTH00066  182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1232018248 145 TSPSL--NPTLLM---CMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:MTH00066  260 FHPLLenNQTALTiclCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN 317
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 9-276 2.27e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.80  E-value: 2.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248   9 FIISLLLGTTITISSNHWIMaWAGLEINTLAILPMISKSHHPRSVEAATKYFLTQAAASALVLFSSMT---NAWHTGQWD 85
Cdd:PRK06589  122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFV 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  86 ITQLTHPTSSLILTSALAMKLG---LAPFHFWFPEVLQGS-PLTTGLLLSTVMK---LPPITLLFMTSPSLNPTLLMCM- 157
Cdd:PRK06589  201 SGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAHyPVSALLHAVIVVKtglFCIYKILLYIFGLSYLQRIFAEf 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 158 ------AVLSTALGGWMGLNQTQIRKILAFSSISHLGW--MAIIIAYNPKLTLLNFYLYT--LMTTAVFLTLNTI----K 223
Cdd:PRK06589  281 nwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIyslkK 360

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1232018248 224 TPNLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:PRK06589  361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP 413
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 111-266 6.16e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 38.41  E-value: 6.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 111 FHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPTLLMCMAVL----STAL-GGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00208  255 LHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLilgsLTALfAASTAISQHDIKKIIAYSTTS 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 186 HLGWMAIIIAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----------KTPNLSTLMttwtkiPSLNAMLFLTLLSLAG 253
Cdd:MTH00208  335 QLGLMVVAIGLNqPNLALFHICTHAFFKAMLFLCSGSIihslnneqdlrKMGGLSFLL------PVTSSCIILGSLALMG 408

                         170
                  ....*....|...
gi 1232018248 254 LPPLTGFLPKWLI 266
Cdd:MTH00208  409 TPFLAGFYSKDLI 421
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-267 6.33e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.39  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  68 ALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSALAMKLGLAPFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSP 147
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 148 SLNP-----TLLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN-PKLTLlnFYLYT--------LMTT 213
Cdd:MTH00211  260 LFQNnqlilGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAF--LHICThaffkamlFMCS 337

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1232018248 214 AVFL-TLNTI----KTPNLSTLMttwtkiPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00211  338 GSIIhGLNNEqdirKMGGLSKNL------PFTSSCLFLGSLALMGFPFLSGFFSKDLIL 390
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 82-268 9.53e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 37.70  E-value: 9.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248  82 GQWDITQLTHPTSSLILTSALAMKLGLA-----PFHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSPSLNPT---- 152
Cdd:MTH00209  160 GNWNIFYLNFNSNLGSVISVLIVLAAMTksaqiPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFSSpffs 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 153 -LLMCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----KTP 225
Cdd:MTH00209  240 mSLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNqPELAFFHLITHALFKALLFICAGNIihshgHSQ 319

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1232018248 226 NLSTLMTTWTKIPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00209  320 DIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILE 362
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 105-271 9.83e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 37.68  E-value: 9.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 105 KLGLapfHFWFPEVLQGSPLTTGLLLSTVMKLPPITLLFMTSP-----SLNPTLLMCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00210  227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFAATVGVVQNDLKKVI 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1232018248 180 AFSSISHLGWMAIIIAynpkltLLNFY--LYTLMTTAVFLTL------NTIKTPNLSTLMTTW----TKIPSLNAMLFLT 247
Cdd:MTH00210  304 AYSTCSQLGYMVMVCG------ISNYStsLFHLMNHAFFKALlflsagSVIHAVSDEQDMRKMggliKSIPFTYVMILIG 377

                         170       180
                  ....*....|....*....|....
gi 1232018248 248 LLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00210  378 SLSLMGFPYLTGFYSKDLIL-ELT 400
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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