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Conserved domains on  [gi|1231969917|gb|OYT32900|]
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hypothetical protein B6U93_00220 [Candidatus Woesearchaeota archaeon ex4484_78]

Protein Classification

ArsR/SmtB family transcription factor( domain architecture ID 10001925)

ArsR (Arsenical Resistance Operon Repressor)/SmtB family transcription factor is a winged-helix-turn-helix transcriptional regulator that may be metal-sensing and modulate the expression of genes associated with metal homeostasis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
10-74 1.81e-18

DNA-binding transcriptional regulator, ArsR family [Transcription];


:

Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 76.08  E-value: 1.81e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALT 74
Cdd:COG0640    14 FKALADPTRLRILRLLAEGELCVGELAEALGLSQSTVSHHLKVLREAGLVTSRREGR-WVYYRLA 77
 
Name Accession Description Interval E-value
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
10-74 1.81e-18

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 76.08  E-value: 1.81e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALT 74
Cdd:COG0640    14 FKALADPTRLRILRLLAEGELCVGELAEALGLSQSTVSHHLKVLREAGLVTSRREGR-WVYYRLA 77
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
10-74 1.22e-17

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 73.49  E-value: 1.22e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALT 74
Cdd:cd00090     1 LKALSDPTRLRILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGR-RVYYSLT 64
HTH_metalloreg NF033788
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ...
10-73 5.11e-15

metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.


Pssm-ID: 411368 [Multi-domain]  Cd Length: 76  Bit Score: 66.71  E-value: 5.11e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYAL 73
Cdd:NF033788    5 FKALADPTRLRILELLAEGELCVCELAEALGLSQSAVSQHLKVLRDAGLVTSRREGR-WVYYRL 67
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
10-66 3.74e-13

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 61.40  E-value: 3.74e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1231969917  10 LKALSNDTRAEIFKLLGKRR-HTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGR 66
Cdd:pfam12840   4 AEALADPTRLRILRALVGDEpLTASELARRLDISRNTLSYHLRKLEEAGLVEVVREGR 61
HTH_ARSR smart00418
helix_turn_helix, Arsenical Resistance Operon Repressor;
20-75 5.70e-11

helix_turn_helix, Arsenical Resistance Operon Repressor;


Pssm-ID: 197713 [Multi-domain]  Cd Length: 66  Bit Score: 55.68  E-value: 5.70e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1231969917   20 EIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALTK 75
Cdd:smart00418   1 KILKLLAEGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGK-RVYYSLTD 55
repress_SdpR NF033789
autorepressor SdpR family transcription factor; Transcription factors in the family of the ...
10-73 1.67e-10

autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues.


Pssm-ID: 411369 [Multi-domain]  Cd Length: 79  Bit Score: 54.73  E-value: 1.67e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGrKWKYYAL 73
Cdd:NF033789    2 FKALSDPTRREILELLKEGDMTAGEIAEHFDMSKPSISHHLNILKQADLVTDERKG-QFIYYSL 64
PRK05638 PRK05638
threonine synthase; Validated
17-81 1.46e-06

threonine synthase; Validated


Pssm-ID: 235539 [Multi-domain]  Cd Length: 442  Bit Score: 47.50  E-value: 1.46e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1231969917  17 TRAEIFKLLGKRRHTQSEIAEKLG--LSVPTIKEHLQELAKAGLI-ERHEEGRKwKYYALTKKGKGVL 81
Cdd:PRK05638  372 TKLEILKILSEREMYGYEIWKALGkpLKYQAVYQHIKELEELGLIeEAYRKGRR-VYYKLTEKGRRLL 438
cas_HTH TIGR01884
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ...
3-77 1.38e-03

CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]


Pssm-ID: 273852 [Multi-domain]  Cd Length: 203  Bit Score: 38.11  E-value: 1.38e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917   3 IKLDKKSLKALsndtraEIFKLLGKRRHTqsEIAEKLGLSVPTIKEHLQELAKAGLIERheEGRKWKYYALTKKG 77
Cdd:TIGR01884 139 AGLSREELKIL------EVLKATGEKSVK--NIAKKLGKSLSTISRHLAELEKKGLVEQ--KGRKGKRYSLTKLG 203
 
Name Accession Description Interval E-value
ArsR COG0640
DNA-binding transcriptional regulator, ArsR family [Transcription];
10-74 1.81e-18

DNA-binding transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 440405 [Multi-domain]  Cd Length: 92  Bit Score: 76.08  E-value: 1.81e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALT 74
Cdd:COG0640    14 FKALADPTRLRILRLLAEGELCVGELAEALGLSQSTVSHHLKVLREAGLVTSRREGR-WVYYRLA 77
COG1777 COG1777
Predicted transcriptional regulator, ArsR family [Transcription];
10-76 3.09e-18

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441383  Cd Length: 113  Bit Score: 76.23  E-value: 3.09e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEE----GRKWKYYALTKK 76
Cdd:COG1777    11 LDALGNPTRRRILALLSEEPAYVSELARELGVSRQAVYKHLRKLEEAGLVESYREgredGRARKYYRLSAF 81
HTH_ARSR cd00090
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ...
10-74 1.22e-17

Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.


Pssm-ID: 238042 [Multi-domain]  Cd Length: 78  Bit Score: 73.49  E-value: 1.22e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALT 74
Cdd:cd00090     1 LKALSDPTRLRILRLLLEGPLTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGR-RVYYSLT 64
HTH_metalloreg NF033788
metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense ...
10-73 5.11e-15

metalloregulator ArsR/SmtB family transcription factor; Transcriptional repressors that sense toxic heavy metals such as arsenic or cadmium, and are released from DNA so that resistance factors will be expressed, include ArsR, SmtB, ZiaR, CadC, CadX, KmtR, etc. However, some members of this family, including the sporulation delaying system autorepressor SdpR and its family (see NF033789), may lack metal-binding cites and instead regulate other cellular processes.


Pssm-ID: 411368 [Multi-domain]  Cd Length: 76  Bit Score: 66.71  E-value: 5.11e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYAL 73
Cdd:NF033788    5 FKALADPTRLRILELLAEGELCVCELAEALGLSQSAVSQHLKVLRDAGLVTSRREGR-WVYYRL 67
COG4189 COG4189
Predicted transcriptional regulator, ArsR family [Transcription];
1-76 9.50e-14

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 443343 [Multi-domain]  Cd Length: 97  Bit Score: 63.83  E-value: 9.50e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231969917   1 MEIKLDKKS---LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEE----GRKWKYYAL 73
Cdd:COG4189     1 MVVLDDEESlevLKALASETRLRILRLLAEEPLNVNELAEALGLPKSTVSYHIRKLEEAGLIRTEYKpgkrGRQKICYLR 80

                  ...
gi 1231969917  74 TKK 76
Cdd:COG4189    81 VDK 83
HTH_20 pfam12840
Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in ...
10-66 3.74e-13

Helix-turn-helix domain; This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.


Pssm-ID: 432824 [Multi-domain]  Cd Length: 61  Bit Score: 61.40  E-value: 3.74e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1231969917  10 LKALSNDTRAEIFKLLGKRR-HTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGR 66
Cdd:pfam12840   4 AEALADPTRLRILRALVGDEpLTASELARRLDISRNTLSYHLRKLEEAGLVEVVREGR 61
COG2345 COG2345
Predicted transcriptional regulator, ArsR family [Transcription];
12-77 1.48e-11

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441914 [Multi-domain]  Cd Length: 217  Bit Score: 60.71  E-value: 1.48e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1231969917  12 ALSNDTRAEIFKLLgKRRHTQS--EIAEKLGLSVPTIKEHLQELAKAGLIERHEE----GRKWKYYALTKKG 77
Cdd:COG2345     9 ALADPTRRRILELL-KRAGPVTaaELAEALGLTPNAVRRHLDALEEEGLVERETErrgrGRPAKLYRLTEAG 79
HTH_ARSR smart00418
helix_turn_helix, Arsenical Resistance Operon Repressor;
20-75 5.70e-11

helix_turn_helix, Arsenical Resistance Operon Repressor;


Pssm-ID: 197713 [Multi-domain]  Cd Length: 66  Bit Score: 55.68  E-value: 5.70e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1231969917   20 EIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRkWKYYALTK 75
Cdd:smart00418   1 KILKLLAEGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGK-RVYYSLTD 55
repress_SdpR NF033789
autorepressor SdpR family transcription factor; Transcription factors in the family of the ...
10-73 1.67e-10

autorepressor SdpR family transcription factor; Transcription factors in the family of the sporulation delaying system autorepressor SdpR (of Bacillus subtilis) resemble metalloregulatory transcriptional repressors such as ArsR, SmtB, CadX, ZiaR, etc., but may lack the key metal-binding residues.


Pssm-ID: 411369 [Multi-domain]  Cd Length: 79  Bit Score: 54.73  E-value: 1.67e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1231969917  10 LKALSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGrKWKYYAL 73
Cdd:NF033789    2 FKALSDPTRREILELLKEGDMTAGEIAEHFDMSKPSISHHLNILKQADLVTDERKG-QFIYYSL 64
COG3398 COG3398
Predicted transcriptional regulator, contains two HTH domains [Transcription];
5-86 1.70e-10

Predicted transcriptional regulator, contains two HTH domains [Transcription];


Pssm-ID: 442625 [Multi-domain]  Cd Length: 159  Bit Score: 56.81  E-value: 1.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231969917   5 LDKKSLKALSNDTRAEIFK-LLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKWKYYaltkkgkgvLNP 83
Cdd:COG3398    86 EEKKILAYLRRETPRRILLyLLENPGATNKELAEELGISRSTVSWHLKRLEEDGLVERERDGRNVRYY---------LNP 156

                  ...
gi 1231969917  84 EET 86
Cdd:COG3398   157 PER 159
COG4742 COG4742
Predicted transcriptional regulator, contains HTH domain [Transcription];
16-82 3.04e-07

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 443776 [Multi-domain]  Cd Length: 267  Bit Score: 49.12  E-value: 3.04e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1231969917  16 DTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGrkwkyYALTKKGKGVLN 82
Cdd:COG4742    16 EKRKNILLLLAEGPKTRSELAESLDVSRSTILRQLKELEERGLIERDDGE-----YELTTLGRLVVE 77
COG2512 COG2512
Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain ...
15-78 4.08e-07

Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only];


Pssm-ID: 442002 [Multi-domain]  Cd Length: 80  Bit Score: 45.67  E-value: 4.08e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1231969917  15 NDTRAEIFKLLGKR--RHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKwKYYALTKKGK 78
Cdd:COG2512    14 LEDERRVLELLRENggRMTQSEIVKETGWSKSKVSRLLSRLEERGLIEKERVGRE-NVVELPEDEP 78
COG3398 COG3398
Predicted transcriptional regulator, contains two HTH domains [Transcription];
11-107 4.58e-07

Predicted transcriptional regulator, contains two HTH domains [Transcription];


Pssm-ID: 442625 [Multi-domain]  Cd Length: 159  Bit Score: 47.57  E-value: 4.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231969917  11 KALSNDTRAEIFKLLgkRRH---TQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKWKYYaltkKGKGVLNPEETK 87
Cdd:COG3398    16 NVLDNDTRRRIYEYI--RENpgiHFREIVRDLGLNRGTLRYHLRRLEREGKITSEKDGGRTRYF----PNSGTYSEEEKK 89
                          90       100
                  ....*....|....*....|.
gi 1231969917  88 ILLLLATTiitmTA-GILTYL 107
Cdd:COG3398    90 ILAYLRRE----TPrRILLYL 106
HTH_MARR smart00347
helix_turn_helix multiple antibiotic resistance protein;
31-82 5.09e-07

helix_turn_helix multiple antibiotic resistance protein;


Pssm-ID: 197670 [Multi-domain]  Cd Length: 101  Bit Score: 46.05  E-value: 5.09e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1231969917   31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIER--HEEGRKWKYYALTKKGKGVLN 82
Cdd:smart00347  26 SVSELAKRLGVSPSTVTRVLDRLEKKGLVRRepSPEDRRSVLVSLTEEGRELIE 79
PRK05638 PRK05638
threonine synthase; Validated
17-81 1.46e-06

threonine synthase; Validated


Pssm-ID: 235539 [Multi-domain]  Cd Length: 442  Bit Score: 47.50  E-value: 1.46e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1231969917  17 TRAEIFKLLGKRRHTQSEIAEKLG--LSVPTIKEHLQELAKAGLI-ERHEEGRKwKYYALTKKGKGVL 81
Cdd:PRK05638  372 TKLEILKILSEREMYGYEIWKALGkpLKYQAVYQHIKELEELGLIeEAYRKGRR-VYYKLTEKGRRLL 438
Lrp COG1522
DNA-binding transcriptional regulator, Lrp family [Transcription];
1-61 1.91e-06

DNA-binding transcriptional regulator, Lrp family [Transcription];


Pssm-ID: 441131 [Multi-domain]  Cd Length: 138  Bit Score: 45.15  E-value: 1.91e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1231969917   1 MEI-KLDKKSLKALSNDTRAeifkllgkrrhTQSEIAEKLGLSVPTIKEHLQELAKAGLIER 61
Cdd:COG1522     1 MELdEIDRRILRLLQEDGRL-----------SFAELAERVGLSESTVLRRVRRLEEAGVIRG 51
HTH_5 pfam01022
Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding ...
15-59 2.44e-06

Bacterial regulatory protein, arsR family; Members of this family contains a DNA binding 'helix-turn-helix' motif. This family includes other proteins which are not included in the Prosite definition.


Pssm-ID: 425993 [Multi-domain]  Cd Length: 45  Bit Score: 42.82  E-value: 2.44e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1231969917  15 NDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLI 59
Cdd:pfam01022   1 DPTRLKILKLLAEGELCVCELAEELGLSQSTVSHHLKKLREAGLV 45
MarR COG1846
DNA-binding transcriptional regulator, MarR family [Transcription];
31-81 2.46e-06

DNA-binding transcriptional regulator, MarR family [Transcription];


Pssm-ID: 441451 [Multi-domain]  Cd Length: 142  Bit Score: 44.96  E-value: 2.46e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIER--HEEGRKWKYYALTKKGKGVL 81
Cdd:COG1846    54 TQSELAERLGLTKSTVSRLLDRLEEKGLVERepDPEDRRAVLVRLTEKGRALL 106
IclR COG1414
DNA-binding transcriptional regulator, IclR family [Transcription];
6-68 3.39e-06

DNA-binding transcriptional regulator, IclR family [Transcription];


Pssm-ID: 441024 [Multi-domain]  Cd Length: 253  Bit Score: 45.97  E-value: 3.39e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1231969917   6 DKKSLKALSndtRA-EIFKLLGKRRH--TQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKW 68
Cdd:COG1414     1 DRSGVQSLE---RAlAILEALAEAGGglSLSELARRLGLPKSTVHRLLATLEEEGYVERDPEGGRY 63
COG3355 COG3355
Predicted transcriptional regulator [Transcription];
15-91 2.41e-05

Predicted transcriptional regulator [Transcription];


Pssm-ID: 442583 [Multi-domain]  Cd Length: 131  Bit Score: 42.26  E-value: 2.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231969917  15 NDTRAEIFKLL--GKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEE-----GRKWKYYAltkkgkgvLNPEETK 87
Cdd:COG3355    26 SETDAEVYLILleNGEPLTVEELAEALDRSRSTVYRSLQKLLEAGLVEREKRnleggGYPYVYYA--------IDPEELK 97

                  ....
gi 1231969917  88 ILLL 91
Cdd:COG3355    98 EKLV 101
HTH_24 pfam13412
Winged helix-turn-helix DNA-binding;
24-59 4.18e-05

Winged helix-turn-helix DNA-binding;


Pssm-ID: 404317 [Multi-domain]  Cd Length: 45  Bit Score: 39.34  E-value: 4.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1231969917  24 LLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLI 59
Cdd:pfam13412  10 LQENPRISQRELAERLGLSPSTVNRRLKRLEEEGVI 45
HTH_DTXR smart00529
Helix-turn-helix diphteria tox regulatory element; iron dependent repressor
33-78 4.67e-05

Helix-turn-helix diphteria tox regulatory element; iron dependent repressor


Pssm-ID: 197774 [Multi-domain]  Cd Length: 95  Bit Score: 40.66  E-value: 4.67e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 1231969917   33 SEIAEKLGLSVPTIKEHLQELAKAGLIERHeegrKWKYYALTKKGK 78
Cdd:smart00529   2 SEIAERLNVSPPTVTEMLKKLEKMGLVEYE----PYRGITLTEKGR 43
MntR COG1321
Mn-dependent transcriptional regulator MntR, DtxR family [Transcription];
21-78 4.69e-05

Mn-dependent transcriptional regulator MntR, DtxR family [Transcription];


Pssm-ID: 440932 [Multi-domain]  Cd Length: 135  Bit Score: 41.34  E-value: 4.69e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1231969917  21 IFKLLGKRRH-TQSEIAEKLGLSVPTIKEHLQELAKAGLIERheegRKWKYYALTKKGK 78
Cdd:COG1321    15 IYELSEEGGPvRTSDIAERLGVSPPSVTEMLKKLEEKGLVEY----EPYGGITLTEEGR 69
LexA COG1974
SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) [Transcription, ...
31-63 5.61e-05

SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) [Transcription, Signal transduction mechanisms];


Pssm-ID: 441577 [Multi-domain]  Cd Length: 199  Bit Score: 42.21  E-value: 5.61e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERHE 63
Cdd:COG1974    27 SQREIAEALGLSSSAVHRHLKALEKKGYLRRDP 59
HTH_CRP cd00092
helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic ...
31-66 1.32e-04

helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.


Pssm-ID: 238044 [Multi-domain]  Cd Length: 67  Bit Score: 38.80  E-value: 1.32e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGR 66
Cdd:cd00092    27 TRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGK 62
HTH_CRP smart00419
helix_turn_helix, cAMP Regulatory protein;
31-62 2.46e-04

helix_turn_helix, cAMP Regulatory protein;


Pssm-ID: 128696 [Multi-domain]  Cd Length: 48  Bit Score: 37.42  E-value: 2.46e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1231969917   31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:smart00419  10 TRQEIAELLGLTRETVSRTLKRLEKEGLISRE 41
HTH_ASNC smart00344
helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase ...
4-62 4.07e-04

helix_turn_helix ASNC type; AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli)


Pssm-ID: 214628 [Multi-domain]  Cd Length: 108  Bit Score: 38.27  E-value: 4.07e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1231969917    4 KLDKKSLKALSNDTRAeifkllgkrrhTQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:smart00344   3 EIDRKILEELQKDARI-----------SLAELAKKVGLSPSTVHNRVKRLEEEGVIKGY 50
TrmB pfam01978
Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown ...
22-73 4.58e-04

Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter in Thermococcus litoralis.


Pssm-ID: 396525 [Multi-domain]  Cd Length: 67  Bit Score: 37.11  E-value: 4.58e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1231969917  22 FKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERhEEGRKWKYYAL 73
Cdd:pfam01978  15 LALLKLGPATADEIAEESGVPRSKVYEVLRSLEDKGLVER-EKGRPKKYRAV 65
COG1672 COG1672
Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only];
20-69 9.58e-04

Predicted ATPase, archaeal AAA+ ATPase superfamily [General function prediction only];


Pssm-ID: 441278 [Multi-domain]  Cd Length: 324  Bit Score: 38.74  E-value: 9.58e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1231969917  20 EIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKWK 69
Cdd:COG1672   249 SILKAIASGATRLSEIASALGISSSSLSRYLKNLIDLGIIEKEVPVEKSK 298
MarR_2 pfam12802
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ...
31-66 9.74e-04

MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.


Pssm-ID: 432797 [Multi-domain]  Cd Length: 60  Bit Score: 36.03  E-value: 9.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGR 66
Cdd:pfam12802  21 TVAELARRLGISKQTVSRLVKRLEAKGLVEREPSPA 56
COG4190 COG4190
Predicted transcriptional regulator, contains HTH domain [Transcription];
8-69 1.21e-03

Predicted transcriptional regulator, contains HTH domain [Transcription];


Pssm-ID: 443344  Cd Length: 121  Bit Score: 37.18  E-value: 1.21e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1231969917   8 KSLKALSNDTRAEIFKLLgKRRHTQS--EIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRKWK 69
Cdd:COG4190    44 ESLARVLTPKRLELLRAI-AEEGPESirELARRLGRDVKNVHRDLKTLEELGLVELEEDGRAKR 106
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
24-93 1.27e-03

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 38.52  E-value: 1.27e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1231969917  24 LLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGL-IERhEEGRKWKY-----YALTKKGkgvLNPEETKILLLLA 93
Cdd:COG2378    14 LQSRRGVTAAELAERLEVSERTIYRDIDALRELGVpIEA-ERGRGGGYrlrdgYRLPPLM---LTEEEALALLLAL 85
cas_HTH TIGR01884
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ...
3-77 1.38e-03

CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]


Pssm-ID: 273852 [Multi-domain]  Cd Length: 203  Bit Score: 38.11  E-value: 1.38e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917   3 IKLDKKSLKALsndtraEIFKLLGKRRHTqsEIAEKLGLSVPTIKEHLQELAKAGLIERheEGRKWKYYALTKKG 77
Cdd:TIGR01884 139 AGLSREELKIL------EVLKATGEKSVK--NIAKKLGKSLSTISRHLAELEKKGLVEQ--KGRKGKRYSLTKLG 203
Sig70_bacteroi1 TIGR02985
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ...
18-51 2.14e-03

RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.


Pssm-ID: 274376 [Multi-domain]  Cd Length: 161  Bit Score: 37.16  E-value: 2.14e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1231969917  18 RAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQ 51
Cdd:TIGR02985 118 CREIFILSRFEGLSNKEIAEELGISVKTVEYHIT 151
CsgD COG2771
DNA-binding transcriptional regulator, CsgD family [Transcription];
19-63 2.90e-03

DNA-binding transcriptional regulator, CsgD family [Transcription];


Pssm-ID: 442052 [Multi-domain]  Cd Length: 188  Bit Score: 37.04  E-value: 2.90e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1231969917  19 AEIFKLLGkRRHTQSEIAEKLGLSVPTIKEHLQEL-AKAGLIERHE 63
Cdd:COG2771   133 REVLRLLA-EGLTLKEIARILGISERTVRTHLKRIyRKLGVSSRAE 177
HTH_AsnC-type pfam13404
AsnC-type helix-turn-helix domain;
4-53 3.31e-03

AsnC-type helix-turn-helix domain;


Pssm-ID: 433180 [Multi-domain]  Cd Length: 41  Bit Score: 34.27  E-value: 3.31e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1231969917   4 KLDKKSLKALSNDTRAeifkllgkrrhTQSEIAEKLGLSVPTIKEHLQEL 53
Cdd:pfam13404   2 EIDRKILRLLQEDARI-----------SFAELAERVGLSESTVLRRIRRL 40
COG3888 COG3888
Predicted transcriptional regulator [Transcription];
20-67 3.54e-03

Predicted transcriptional regulator [Transcription];


Pssm-ID: 443096 [Multi-domain]  Cd Length: 328  Bit Score: 37.31  E-value: 3.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1231969917  20 EIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEEGRK 67
Cdd:COG3888    10 RILKNYGGEGIPQSELVRLLGASKSRVSEILSELEKEGLIARKKVIGK 57
MarR pfam01047
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ...
30-61 3.92e-03

MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.


Pssm-ID: 426012 [Multi-domain]  Cd Length: 59  Bit Score: 34.45  E-value: 3.92e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1231969917  30 HTQSEIAEKLGLSVPTIKEHLQELAKAGLIER 61
Cdd:pfam01047  18 LTVSELAEKLGVSKSTVTRVLDRLEKKGLIER 49
Smf COG0758
Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake ...
15-69 4.26e-03

Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake [Replication, recombination and repair];


Pssm-ID: 440521 [Multi-domain]  Cd Length: 360  Bit Score: 36.98  E-value: 4.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1231969917  15 NDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHeEGRKWK 69
Cdd:COG0758   305 DPEEKRVLDALGPEPVSIDELARRTGLPVAEVLAALLELELKGLVERL-PGGRYS 358
IscR COG1959
DNA-binding transcriptional regulator, IscR family [Transcription];
26-60 5.47e-03

DNA-binding transcriptional regulator, IscR family [Transcription];


Pssm-ID: 441562  Cd Length: 141  Bit Score: 35.59  E-value: 5.47e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1231969917  26 GKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIE 60
Cdd:COG1959    21 GGEPVTSKEIAERQGISPSYLEKILQKLRKAGLVE 55
DprA_WH pfam17782
DprA winged helix domain; This winged helix domain is found in the DprA protein.
16-62 5.51e-03

DprA winged helix domain; This winged helix domain is found in the DprA protein.


Pssm-ID: 436040 [Multi-domain]  Cd Length: 61  Bit Score: 34.03  E-value: 5.51e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1231969917  16 DTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:pfam17782  12 ADEARVLAALGPDPVSVDELVRRTGLPAAEVSAALLELELAGRVERL 58
MngR COG2188
DNA-binding transcriptional regulator, GntR family [Transcription];
31-62 5.70e-03

DNA-binding transcriptional regulator, GntR family [Transcription];


Pssm-ID: 441791 [Multi-domain]  Cd Length: 238  Bit Score: 36.38  E-value: 5.70e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:COG2188    31 SERELAEEFGVSRMTVRKALDELVEEGLLERR 62
DeoR COG2390
DNA-binding transcriptional regulator LsrR, DeoR family [Transcription];
31-60 6.26e-03

DNA-binding transcriptional regulator LsrR, DeoR family [Transcription];


Pssm-ID: 441955 [Multi-domain]  Cd Length: 301  Bit Score: 36.26  E-value: 6.26e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIE 60
Cdd:COG2390    12 TQREIAERLGISRRTVSRLLAEAREEGLVR 41
pheS PRK04172
phenylalanine--tRNA ligase subunit alpha;
13-92 6.26e-03

phenylalanine--tRNA ligase subunit alpha;


Pssm-ID: 235239 [Multi-domain]  Cd Length: 489  Bit Score: 36.73  E-value: 6.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1231969917  13 LSNDTRAEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQELAKAGLIERHEegRKWKYYALTKKGKGVLN---PEEtKIL 89
Cdd:PRK04172    4 LHPNEKKVLKALKELKEATLEELAEKLGLPPEAVMRAAEWLEEKGLVKVEE--RVEEVYVLTEEGKKYAEeglPER-RLL 80

                  ...
gi 1231969917  90 LLL 92
Cdd:PRK04172   81 NAL 83
CitB COG2197
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal ...
20-63 6.92e-03

DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 441799 [Multi-domain]  Cd Length: 131  Bit Score: 35.25  E-value: 6.92e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1231969917  20 EIFKLLGkRRHTQSEIAEKLGLSVPTIKEHLQE-LAKAGLIERHE 63
Cdd:COG2197    76 EVLRLLA-EGLSNKEIAERLGISERTVKTHVSNiLRKLGVRNRTE 119
HTH_GNTR smart00345
helix_turn_helix gluconate operon transcriptional repressor;
31-61 7.09e-03

helix_turn_helix gluconate operon transcriptional repressor;


Pssm-ID: 197669 [Multi-domain]  Cd Length: 60  Bit Score: 33.70  E-value: 7.09e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1231969917   31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIER 61
Cdd:smart00345  22 SERELAAQLGVSRTTVREALSRLEAEGLVQR 52
GntR pfam00392
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ...
31-62 7.29e-03

Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.


Pssm-ID: 306822 [Multi-domain]  Cd Length: 64  Bit Score: 33.74  E-value: 7.29e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:pfam00392  26 SERELAAEFGVSRTTVREALRRLEAEGLVERR 57
DmsR COG3413
Predicted transcriptional regulator, contains HTH domain [General function prediction only];
28-51 8.00e-03

Predicted transcriptional regulator, contains HTH domain [General function prediction only];


Pssm-ID: 442639 [Multi-domain]  Cd Length: 143  Bit Score: 35.30  E-value: 8.00e-03
                          10        20
                  ....*....|....*....|....
gi 1231969917  28 RRHTQSEIAEKLGLSVPTIKEHLQ 51
Cdd:COG3413   107 REATLEELAEELGISKSTLSEHLR 130
HTH_DeoR pfam08220
DeoR-like helix-turn-helix domain;
18-62 8.12e-03

DeoR-like helix-turn-helix domain;


Pssm-ID: 285436 [Multi-domain]  Cd Length: 57  Bit Score: 33.39  E-value: 8.12e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1231969917  18 RAEIFKLLGKRRH-TQSEIAEKLGLSVPTIKEHLQELAKAGLIERH 62
Cdd:pfam08220   2 IQQILELLKQQGTlSVEELAELLGVSEMTIRRDLNELEEQGLLTRT 47
HTH_36 pfam13730
Helix-turn-helix domain;
31-59 8.57e-03

Helix-turn-helix domain;


Pssm-ID: 463970 [Multi-domain]  Cd Length: 55  Bit Score: 33.23  E-value: 8.57e-03
                          10        20
                  ....*....|....*....|....*....
gi 1231969917  31 TQSEIAEKLGLSVPTIKEHLQELAKAGLI 59
Cdd:pfam13730  27 SVETLAKRLGLSRRTIQRAIKELEELGYL 55
RpoE COG1595
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ...
10-61 9.82e-03

DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441203 [Multi-domain]  Cd Length: 181  Bit Score: 35.36  E-value: 9.82e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1231969917  10 LKALSNDTRaEIFKLLGKRRHTQSEIAEKLGLSVPTIKEHLQElAKAGLIER 61
Cdd:COG1595   125 LERLPPRQR-EVLVLRYLEGLSYAEIAEILGISEGTVKSRLSR-ARKKLREA 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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