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Conserved domains on  [gi|1231738776|emb|SNV51221|]
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Uncharacterised protein [Chryseobacterium taklimakanense]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4026 super family cl26606
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
 4-62 2.37e-04

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


The actual alignment was detected with superfamily member COG4026:

Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 38.17  E-value: 2.37e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1231738776   4 DLESNFLLLEKRILMLKKDYQNLREEHAALSKDYEEMKEKYEAERKKSQELAEEQKNIK 62
Cdd:COG4026   132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIK 190
 
Name Accession Description Interval E-value
COG4026 COG4026
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
 4-62 2.37e-04

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 38.17  E-value: 2.37e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1231738776   4 DLESNFLLLEKRILMLKKDYQNLREEHAALSKDYEEMKEKYEAERKKSQELAEEQKNIK 62
Cdd:COG4026   132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIK 190
 
Name Accession Description Interval E-value
COG4026 COG4026
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ...
 4-62 2.37e-04

Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];


Pssm-ID: 443204 [Multi-domain]  Cd Length: 287  Bit Score: 38.17  E-value: 2.37e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1231738776   4 DLESNFLLLEKRILMLKKDYQNLREEHAALSKDYEEMKEKYEAERKKSQELAEEQKNIK 62
Cdd:COG4026   132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIK 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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