|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
149-653 |
5.71e-135 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 411.57 E-value: 5.71e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 149 NWMIRGYLDSNKHLNSLLIFAHMHKFSILPDSSTFPAVIKATARSCNVELGKMIHGTVIQMGFIRDVYTSTALVHMYCTC 228
Cdd:PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 229 LSISDAYQLFDEMPERNSVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGTWIHEFIY 308
Cdd:PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 309 QNKLRLNVFVGTALIDMYAKCGAVEEAEKVFEEIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGV 388
Cdd:PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 389 LCACCHQGLVTEGRRQFVSMKQHFGLRPRIEHYGCMVDLLGRAGLLEEALELIQSMSMEPDPIIWRALLCACRVHGNTKL 468
Cdd:PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 469 GEYAIRRLIDLEPNNGENYVLLSNLYSRERRWIEVGKLRGMMSLRGIGKVPGCSSIEIKNVVYEFAASNDRKPEFDAIYK 548
Cdd:PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 549 QLDNVIEKLKANGYITGTGMALFDIEEEEKEHCVMYHSEKLALAFGLLNSPLDCALRIVKNLRICLDCHEFFKVASLVYK 628
Cdd:PLN03081 593 KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK 672
|
490 500
....*....|....*....|....*
gi 1229764162 629 RFIVVRDRNRFHHFSEGFCSCRDYW 653
Cdd:PLN03081 673 REIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
561-653 |
6.17e-38 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 135.63 E-value: 6.17e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 561 GYITGTGMALFDIEEEEKEHCVMYHSEKLALAFGLLNSPLDCALRIVKNLRICLDCHEFFKVASLVYKRFIVVRDRNRFH 640
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1229764162 641 HFSEGFCSCRDYW 653
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
348-382 |
2.61e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 44.37 E-value: 2.61e-06
10 20 30
....*....|....*....|....*....|....*
gi 1229764162 348 YTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDE 382
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
307-500 |
3.59e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 307 IYQNKLRLNVFVGTA---LIDMYAKCGAVEEAEKVFEEIRE---KNVYTWNVLISGYAMNGQGDEALQAFSMMLRENfkP 380
Cdd:COG2956 64 IHQKLLERDPDRAEAlleLAQDYLKAGLLDRAEELLEKLLEldpDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--P 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 381 DEVTFLgvlcacCHQGLVTEGRRQFVSMKQHF---------GLRPRIEhygcMVDLLGRAGLLEEALELIQSM-SMEPDP 450
Cdd:COG2956 142 ENAHAY------CELAELYLEQGDYDEAIEALekalkldpdCARALLL----LAELYLEQGDYEEAIAALERAlEQDPDY 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1229764162 451 IIWRALLCAC-RVHGNTKLGEYAIRRLIDLEPNNgENYVLLSNLYSRERRW 500
Cdd:COG2956 212 LPALPRLAELyEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGL 261
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
149-653 |
5.71e-135 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 411.57 E-value: 5.71e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 149 NWMIRGYLDSNKHLNSLLIFAHMHKFSILPDSSTFPAVIKATARSCNVELGKMIHGTVIQMGFIRDVYTSTALVHMYCTC 228
Cdd:PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 229 LSISDAYQLFDEMPERNSVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGTWIHEFIY 308
Cdd:PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 309 QNKLRLNVFVGTALIDMYAKCGAVEEAEKVFEEIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGV 388
Cdd:PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 389 LCACCHQGLVTEGRRQFVSMKQHFGLRPRIEHYGCMVDLLGRAGLLEEALELIQSMSMEPDPIIWRALLCACRVHGNTKL 468
Cdd:PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 469 GEYAIRRLIDLEPNNGENYVLLSNLYSRERRWIEVGKLRGMMSLRGIGKVPGCSSIEIKNVVYEFAASNDRKPEFDAIYK 548
Cdd:PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 549 QLDNVIEKLKANGYITGTGMALFDIEEEEKEHCVMYHSEKLALAFGLLNSPLDCALRIVKNLRICLDCHEFFKVASLVYK 628
Cdd:PLN03081 593 KLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTK 672
|
490 500
....*....|....*....|....*
gi 1229764162 629 RFIVVRDRNRFHHFSEGFCSCRDYW 653
Cdd:PLN03081 673 REIVVRDASRFHHFKLGKCSCGDYW 697
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
151-651 |
9.54e-128 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 397.68 E-value: 9.54e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 151 MIRGYLDSNKHLNSLLIFAHMHKFSILPDSSTFPAVIKATARSCNVELGKMIHGTVIQMGFIRDVYTSTALVHMYCTCLS 230
Cdd:PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 231 ISDAYQLFDEMPERNSVTWNALITGYTHNRKFMEAINAFRGMLAAgAEPSERTVVVVLSACSHLGALNQGTWIHEFIYQN 310
Cdd:PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 311 KLRLNVFVGTALIDMYAKCGAVEEAEKVFEeIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGVLC 390
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 391 ACCHQGLVTEGRRQFVSMKQHFGLRPRIEHYGCMVDLLGRAGLLEEALELIQSMSMEPDPIIWRALLCACRVHGNTKLGE 470
Cdd:PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 471 YAIRRLIDLEPNNGENYVLLSNLYSRERRWIEVGKLRGMMSLRGIGKVPGCSSIEIKNVVYEFAASNDRKPEFDAIYKQL 550
Cdd:PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 551 DNVIEKLKANGYiTGTGMALFDIEEEEKEHCVMYHSEKLALAFGLLNSPLDCALRIVKNLRICLDCHEFFKVASLVYKRF 630
Cdd:PLN03077 758 EGFYEKMKASGL-AGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRRE 836
|
490 500
....*....|....*....|.
gi 1229764162 631 IVVRDRNRFHHFSEGFCSCRD 651
Cdd:PLN03077 837 ISVRDTEQFHHFKDGECSCGD 857
|
|
| DYW_deaminase |
pfam14432 |
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases ... |
561-653 |
6.17e-38 |
|
DYW family of nucleic acid deaminases; This is the DYW domain found in nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members containing this domain are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. This domain contains a characteriztic zinc-binding motif (CXXC, HXE) which has been shown to bind zinc ions. This domain is often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems.
Pssm-ID: 464172 [Multi-domain] Cd Length: 93 Bit Score: 135.63 E-value: 6.17e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 561 GYITGTGMALFDIEEEEKEHCVMYHSEKLALAFGLLNSPLDCALRIVKNLRICLDCHEFFKVASLVYKRFIVVRDRNRFH 640
Cdd:pfam14432 1 GYVPDLKFVLHDVDEEEKKQLLHGHSEKLALAYGLLTTPDGATIRITKNLRVCGDCHTAFKYISKIFGREIVVRDASRFH 80
|
90
....*....|...
gi 1229764162 641 HFSEGFCSCRDYW 653
Cdd:pfam14432 81 HFKNGLCSCGDFW 93
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
160-499 |
4.06e-31 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 129.97 E-value: 4.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 160 KHLNSllifahMHKFSILPDSSTFPAVIKATARSCNVELGKMIHGTVIQMGFIRDVYTSTALVHMYCTCLSISDAYQLFD 239
Cdd:PLN03077 72 KLLES------MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 240 EMPERNSVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGTWIHEFIYQNKLRLNVFVG 319
Cdd:PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 320 TALIDMYAKCGAVEEAEKVFEEIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGVLCACCHQGLVT 399
Cdd:PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 400 EGR--------RQFV-----------------SMKQHFGLRPRIE-----HYGCMVDLLGRAGLLEEALELIQSM---SM 446
Cdd:PLN03077 306 LGRemhgyvvkTGFAvdvsvcnsliqmylslgSWGEAEKVFSRMEtkdavSWTAMISGYEKNGLPDKALETYALMeqdNV 385
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1229764162 447 EPDPIIWRALLCACRVHGN----TKLGEYAIR-RLIdlepnngeNYVLLSN----LYSRERR 499
Cdd:PLN03077 386 SPDEITIASVLSACACLGDldvgVKLHELAERkGLI--------SYVVVANalieMYSKCKC 439
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
463-525 |
1.72e-17 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 76.81 E-value: 1.72e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1229764162 463 HGNTKLGEYAIRRLIDLEPNNGENYVLLSNLYSRERRWIEVGKLRGMMSLRGIGKVPGCSSIE 525
Cdd:pfam20431 1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
250-515 |
1.28e-15 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 80.66 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 250 NALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGTWIHEFIYQNKLRLNVFVGTALIDMYAKC 329
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 330 GAVEEAEKVFEEIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGVLCACCHQGLVTEGRR------ 403
Cdd:PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREvhahvv 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 404 ----------------------QFVSMKQHFGLRPRIE--HYGCMVDLLGRAGLLEEALELIQSM---SMEPDPIIWRAL 456
Cdd:PLN03077 215 rfgfeldvdvvnalitmyvkcgDVVSARLVFDRMPRRDciSWNAMISGYFENGECLEGLELFFTMrelSVDPDLMTITSV 294
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1229764162 457 LCACRVHGNTKLGE----YAIRR--LIDLEPNNGenyvlLSNLYSRERRWIEVGKLRGMMSLRGI 515
Cdd:PLN03077 295 ISACELLGDERLGRemhgYVVKTgfAVDVSVCNS-----LIQMYLSLGSWGEAEKVFSRMETKDA 354
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
222-444 |
1.02e-11 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 68.36 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 222 VHMYCTCLS---ISDAYQLFDEMPERNSVTWNALitgytHNRKFMEAINAFRGMLAAGA------EPSERTVVVVLSACS 292
Cdd:PLN03218 374 IDAYNRLLRdgrIKDCIDLLEDMEKRGLLDMDKI-----YHAKFFKACKKQRAVKEAFRfaklirNPTLSTFNMLMSVCA 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 293 HL----GALNqgtwIHEFIYQNKLRLNVFVGTALIDMYAKCGAVEEAEKVFEEIR----EKNVYTWNVLISGYAMNGQGD 364
Cdd:PLN03218 449 SSqdidGALR----VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVA 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 365 EALQAFSMMLRENFKPDEVTFLGVLCACCHQGLVTEGRRQFVSMK-QHFGLRPRIEHYGCMVDLLGRAGLLEEALELIQS 443
Cdd:PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
|
.
gi 1229764162 444 M 444
Cdd:PLN03218 605 I 605
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
345-394 |
1.60e-11 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 59.30 E-value: 1.60e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1229764162 345 KNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEVTFLGVLCACCH 394
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
315-358 |
2.49e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.36 E-value: 2.49e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1229764162 315 NVFVGTALIDMYAKCGAVEEAEKVFEEIREK----NVYTWNVLISGYA 358
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
242-460 |
7.31e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.57 E-value: 7.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 242 PERnsVTWNALITGYTHNRKFMEAINAFRGMLAAGA--EPSERTVVVVLSACSHLGALNQGTWIHEFIYQNKLRLNVFVG 319
Cdd:PLN03218 540 PDR--VVFNALISACGQSGAVDRAFDVLAEMKAETHpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 320 TALIDMYAKCGAVEEAEKVFEEIREKNVYTWNVLIS------GYAmnGQGDEALQAFSMMLRENFKPDEVTFLGVLCACC 393
Cdd:PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSalvdvaGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 394 HQGLVTEGRRQFVSMKQhFGLRPRIEHYGCMVDLLGRAGLLEEALELIQSMS---MEPDPIIWRALLCAC 460
Cdd:PLN03218 696 NAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVAS 764
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
176-392 |
1.00e-06 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.19 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 176 ILPDSSTFPAVIKATARSCNV----ELGKMIHGTVIQmGFIrDVYtsTALVHmycTCLSISD---AYQLFDEMPER---- 244
Cdd:PLN03218 575 IDPDHITVGALMKACANAGQVdrakEVYQMIHEYNIK-GTP-EVY--TIAVN---SCSQKGDwdfALSIYDDMKKKgvkp 647
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 245 NSVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSHLGALNQGTWIHEFIYQNKLRLNVFVGTALid 324
Cdd:PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL-- 725
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1229764162 325 MYAKCGA--VEEAEKVFEEIRE----KNVYTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDEvtflgVLCAC 392
Cdd:PLN03218 726 ITALCEGnqLPKALEVLSEMKRlglcPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL-----VMCRC 794
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
244-293 |
1.97e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 45.05 E-value: 1.97e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1229764162 244 RNSVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTVVVVLSACSH 293
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
348-382 |
2.61e-06 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 44.37 E-value: 2.61e-06
10 20 30
....*....|....*....|....*....|....*
gi 1229764162 348 YTWNVLISGYAMNGQGDEALQAFSMMLRENFKPDE 382
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
307-500 |
3.59e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 3.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 307 IYQNKLRLNVFVGTA---LIDMYAKCGAVEEAEKVFEEIRE---KNVYTWNVLISGYAMNGQGDEALQAFSMMLRENfkP 380
Cdd:COG2956 64 IHQKLLERDPDRAEAlleLAQDYLKAGLLDRAEELLEKLLEldpDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--P 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 381 DEVTFLgvlcacCHQGLVTEGRRQFVSMKQHF---------GLRPRIEhygcMVDLLGRAGLLEEALELIQSM-SMEPDP 450
Cdd:COG2956 142 ENAHAY------CELAELYLEQGDYDEAIEALekalkldpdCARALLL----LAELYLEQGDYEEAIAALERAlEQDPDY 211
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1229764162 451 IIWRALLCAC-RVHGNTKLGEYAIRRLIDLEPNNgENYVLLSNLYSRERRW 500
Cdd:COG2956 212 LPALPRLAELyEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGL 261
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
348-378 |
3.18e-05 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 41.30 E-value: 3.18e-05
10 20 30
....*....|....*....|....*....|.
gi 1229764162 348 YTWNVLISGYAMNGQGDEALQAFSMMLRENF 378
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
213-256 |
3.90e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.19 E-value: 3.90e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1229764162 213 RDVYTSTALVHMYCTCLSISDAYQLFDEMPER----NSVTWNALITGY 256
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
325-502 |
5.61e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.00 E-value: 5.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 325 MYAKCGAVEEAEKVFE---EIREKNVYTWNVLISGYAMNGQGDEALQAFSMMLRENfkPDEVTFLgvlcacCHQGLVteg 401
Cdd:COG0457 17 AYRRLGRYEEAIEDYEkalELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD--PDDAEAL------NNLGLA--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 402 rrqfvsmkqhfglrpriehygcmvdlLGRAGLLEEALELI-QSMSMEP-DPIIWRALLCACRVHGNTKLGEYAIRRLIDL 479
Cdd:COG0457 86 --------------------------LQALGRYEEALEDYdKALELDPdDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
170 180
....*....|....*....|...
gi 1229764162 480 EPNNGENYVLLSNLYSRERRWIE 502
Cdd:COG0457 140 DPDDADALYNLGIALEKLGRYEE 162
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
320-347 |
7.73e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 7.73e-04
10 20
....*....|....*....|....*...
gi 1229764162 320 TALIDMYAKCGAVEEAEKVFEEIREKNV 347
Cdd:pfam01535 4 NSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
247-281 |
1.07e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 1.07e-03
10 20 30
....*....|....*....|....*....|....*
gi 1229764162 247 VTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSE 281
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
421-502 |
5.27e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.86 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1229764162 421 YGCMVDLLGRAGLLEEALELIQ-SMSMEPD-PIIWRALLCACRVHGNTKLGEYAIRRLIDLEPNNGENYVLLSNLYSRER 498
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHeALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120
|
....
gi 1229764162 499 RWIE 502
Cdd:COG4783 121 RPDE 124
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
209-241 |
7.89e-03 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 34.24 E-value: 7.89e-03
10 20 30
....*....|....*....|....*....|...
gi 1229764162 209 MGFIRDVYTSTALVHMYCTCLSISDAYQLFDEM 241
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
|
|
| |
