|
Name |
Accession |
Description |
Interval |
E-value |
| HrpA |
COG1643 |
HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]; |
4-802 |
0e+00 |
|
HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441249 [Multi-domain] Cd Length: 836 Bit Score: 910.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 4 TDLPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE---RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTV 80
Cdd:COG1643 8 PDLPVSAVLPELLAALRAHQVVVLAAPPGAGKTTQLPLALLElgwGAGGRIGMLEPRRLAARAAAERMAEELGEPVGETV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 81 GYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRGGLREDLRLLATSATVA 160
Cdd:COG1643 88 GYRVRFEDKVSAATRIEVVTEGILLRELQRDPELEGVDTVIFDEFHERSLNADLLLALLLDLQPALRPDLKLLVMSATLD 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 161 ADTLATLLGDAPVVTANATTYPVTVEHIAPARHER-IEATVARAVGKALATTEGDVLAFLPGAGEIARARRVLDN--LGE 237
Cdd:COG1643 168 AERFARLLGDAPVIESSGRTYPVEVRYRPLPADERdLEDAVADAVREALAEEPGDILVFLPGEREIRRTAEALRGrlPPD 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 238 VDVLTLHGKLAASGQDAALTPGP--RRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVRVSAAVAEQ 315
Cdd:COG1643 248 TEILPLYGRLSAAEQDRAFAPAPhgRRRIVLATNIAETSLTVPGIRYVIDSGLARIPRYDPRSGVTRLPTERISQASANQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 316 RAGRAGRQGPGTVFRCWPAHEQASLPPYPEPEIRTAELSSLALELACWSTPDGSGLAWWDRPPEGALAAGRALLRTLEAT 395
Cdd:COG1643 328 RAGRAGRLAPGICYRLWSEEDFARRPAFTDPEILRADLASLILELAAWGLGDPEDLPFLDPPPARAIADARALLQELGAL 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 396 APDGTVTRRGRRMAALGLHPRLARALLDGASEVGARAAAEVVALLD-----GGASGVDVEDELRRLRRSADGK------- 463
Cdd:COG1643 408 DADGRLTPLGRALARLPLDPRLARMLLAAAELGCLREAAILAALLSerdprRGAAGSDLLARLNLWRRLREQQreflsyl 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 464 ---RWRRDVDRLASLVPDGDGTPDP-----AFVVALAHPERLARRRkGGAPVYLLASGTAAELRDAGGLADAEWLAVAEA 535
Cdd:COG1643 488 rlrEWRDLARQLRRLLGEGANEEPAdyeaiGLLLALAYPDRIARRR-GEGGRYLLARGRGAALFPGSPLAKKEWLVAAEL 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 536 TRepGRAHAVIRLAARADEKLARTVAAAQLTETEEVTW--ADGDVLARKIQRLGAITLAETPLPDPDSAAVRAALLTGIR 613
Cdd:COG1643 567 VG--GAAEARIRLAAPIDPEWLEELAAHLIKRYSEPHWdkKRGRVVARERVRLGALVLVSRPLPGPDPEAAREALLRALR 644
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 614 KEGLGLLRWTDDATRLAHRLAFLHERLGQPWPDVSEQALLSEVDVWLAAELSTATGRADLGRIAVEPALRGLLSWREAAR 693
Cdd:COG1643 645 REGLDLLPWSKAARQLRARVEFLERKLGERWPDVSDEALLATLEDWLAPYLTGVRSLKDLKRLDLLAALRALLPWEQQQR 724
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 694 LDELAPDRLTVPSGSRIRVDYSSGSPVLAVKLQETFGWLTTPKVAGGTVPVVLHLLSPAGRPAAVTSDLASFWKQGYLAV 773
Cdd:COG1643 725 LDELAPTHLTVPSGSRLPLDYSADGPPVAVRLQELFGLAETPGVADGRVPVPLHLLSPAGRPLQVTWDLPGFWRGSYAEV 804
|
810 820
....*....|....*....|....*....
gi 1223776737 774 RAELRGRYPKHPWPEDPMTAPPARGTRRR 802
Cdd:COG1643 805 RKELRGRYPKHPWPDDPAAAAPTRRTKRR 833
|
|
| DEAH_box_HrpB |
TIGR01970 |
ATP-dependent helicase HrpB; This model represents HrpB, one of two related but ... |
6-803 |
0e+00 |
|
ATP-dependent helicase HrpB; This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity]
Pssm-ID: 273901 [Multi-domain] Cd Length: 819 Bit Score: 653.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSL--AERDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGYS 83
Cdd:TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALldAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 84 VRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRGGLREDLRLLATSATVAADT 163
Cdd:TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 164 LATLLGDAPVVTANATTYPVTVEHIAPARHERIEATVARAVGKALATTEGDVLAFLPGAGEIARARRVL-DNLG-EVDVL 241
Cdd:TIGR01970 161 LSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLaERLDsDVLIC 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 242 TLHGKLAASGQDAALTPGP--RRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVRVSAAVAEQRAGR 319
Cdd:TIGR01970 241 PLYGELSLAAQDRAIKPDPqgRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGR 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 320 AGRQGPGTVFRCWPAHEQASLPPYPEPEIRTAELSSLALELACWSTPDGSGLAWWDRPPEGALAAGRALLRTLEATAPDG 399
Cdd:TIGR01970 321 AGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 400 TVTRRGRRMAALGLHPRLARALLDGASEVGARAAAEVVALLDG----GASGVDVEDELRRLR-----RSADGKRWRRDVD 470
Cdd:TIGR01970 401 RLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEErglpRQGGADLMNRLHRLQqgrqgRGQRAQQLAKKLR 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 471 RLASLVPDGDGTPDP---AFVVALAHPERLARRRkGGAPVYLLASGTAAELRDAGGLADAEWLAVAEATREPGRAHAVIR 547
Cdd:TIGR01970 481 RRLRFSQADSGAIAShalGLLLALAFPDRIAKRR-GQPGRYQLANGRGAVLSAEDALAREPWLVAADLGEGQGKTAARIL 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 548 LAARADEKLARTVAAAQLTETEEVTWAD--GDVLARKIQRLGAITLAETPLPDPDSAAVRAALLTGIRKEGLGLLRWTDD 625
Cdd:TIGR01970 560 LAAPVDEALLRQVLPDLVVQVDQVDWDEtkGRLVAERQLRIGQLVLKSEPLANPDPAQIAAALLNYVRQKGLSALNWTEE 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 626 ATRLAHRLAFLHERLGQ-PWPDVSEQALLSEVDVWLAAELSTATGRADLGRIAVEPALRGLLSWREAARLDELAPDRLTV 704
Cdd:TIGR01970 640 LRQWRARVACARSWDPEaDWPDLSDEALLARLETWLEPYLAGVTSLSGLQELDLYDALKNLLPWELQQALDALLPTHWPV 719
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 705 PSGSRIRVDYS-SGSPVLAVKLQETFGWLTTPKVAGGTVPVVLHLLSPAGRPAAVTSDLASFWKQGYLAVRAELRGRYPK 783
Cdd:TIGR01970 720 PTGNFIAIRYSlDGPPLLAVRLQELFGLAESPRVAQGRVPLTLELLSPAQRPLQVTRDLASFWAGAYREVKKEMKGRYPK 799
|
810 820
....*....|....*....|
gi 1223776737 784 HPWPEDPMTAPPARGTRRRT 803
Cdd:TIGR01970 800 HVWPDDPANAAPTKRTKPRG 819
|
|
| PRK11664 |
PRK11664 |
ATP-dependent RNA helicase HrpB; Provisional |
4-801 |
0e+00 |
|
ATP-dependent RNA helicase HrpB; Provisional
Pssm-ID: 236950 [Multi-domain] Cd Length: 812 Bit Score: 611.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 4 TDLPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERD--SGRIVVAEPRRLATRAAALRMAALLGEDVGGTVG 81
Cdd:PRK11664 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGgiNGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 82 YSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRGGLREDLRLLATSATVAA 161
Cdd:PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 162 DTLATLLGDAPVVTANATTYPVTVEHIAPARHERIEATVARAVGKALATTEGDVLAFLPGAGEIARARRVLDNL--GEVD 239
Cdd:PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRvaSDVL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 240 VLTLHGKLAASGQDAALTPGP--RRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVRVSAAVAEQRA 317
Cdd:PRK11664 242 LCPLYGALSLAEQQKAILPAPagRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 318 GRAGRQGPGTvfrCWP--AHEQAS-LPPYPEPEIRTAELSSLALELACWSTPDGSGLAWWDRPPEGALAAGRALLRTLEA 394
Cdd:PRK11664 322 GRAGRLEPGI---CLHlySKEQAErAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGA 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 395 TAPDGTVTRRGRRMAALGLHPRLArALLDGASEVGARA---AAEVVALLDGGASGV--DVEDELRRLRRSadgkrWRRDV 469
Cdd:PRK11664 399 LDGQGRLTARGRKMAALGNDPRLA-AMLVAAKEDDEAAlatAAKLAAILEEPPRSGssDLGVALSRKQPH-----WQQRA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 470 DRLASLVPDGDGTPDPAF---VVALAHPERLARRRkGGAPVYLLASGTAAELRDAGGLADAEWLAVAEATREPGRAHAVI 546
Cdd:PRK11664 473 QQLLKRLNVRGGEADSSLiapLLALAFPDRIARRR-GQDGRYQLANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARI 551
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 547 RLAARADEKLARTVAAAQLTETEEVTWAD--GDVLARKIQRLGAITLAETPLPDPDSAAVRAALLTGIRKEGLGLLRWTD 624
Cdd:PRK11664 552 LLALPLDIDELVQRCPQLVQQSDTVEWDEakGTLRAWRRLQIGQLTVKVQPLAKPSEEELHQALLNWIRRKGLSVLNWTP 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 625 DATRLAHRLAFLHERLG-QPWPDVSEQALLSEVDVWLAAELSTATGRADLGRIAVEPALRGLLSWREAARLDELAPDRLT 703
Cdd:PRK11664 632 EAEQLRLRLLCAAKWLPeYDWPAVDDESLLASLETWLLPHMTGVRSLRGLKSLNIAQALRGLLDWPQRQRLDSELPTHYT 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 704 VPSGSRIRVDYSSGS-PVLAVKLQETFGWLTTPKVAGGTVPVVLHLLSPAGRPAAVTSDLASFWKQGYLAVRAELRGRYP 782
Cdd:PRK11664 712 VPTGSRIAIRYHEDNpPALAVRMQEMFGEAQSPTIAQGRVPLVLELLSPAQRPLQITRDLAAFWQGAYREVQKEMKGRYP 791
|
810
....*....|....*....
gi 1223776737 783 KHPWPEDPMTAPPARGTRR 801
Cdd:PRK11664 792 KHVWPDDPANTAPTRRTKK 810
|
|
| HrpB_C |
pfam08482 |
ATP-dependent helicase C-terminal; This domain is found near the C-terminus of bacterial ... |
667-789 |
2.10e-65 |
|
ATP-dependent helicase C-terminal; This domain is found near the C-terminus of bacterial ATP-dependent helicases such as HrpB.
Pssm-ID: 430021 [Multi-domain] Cd Length: 126 Bit Score: 213.45 E-value: 2.10e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 667 ATGRADLGRIAVEPALRGLLSWREAARLDELAPDRLTVPSGSRIRVDYS--SGSPVLAVKLQETFGWLTTPKVAGGTVPV 744
Cdd:pfam08482 2 VRSLADLKRLDLLAALRALLPWEQQQRLDRLAPEHLTVPSGSRIRIDYSaeGGAPVLAVRLQELFGLAETPRIAGGRVPL 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1223776737 745 VLHLLSPAGRPAAVTSDLASFWKQGYLAVRAELRGRYPKHPWPED 789
Cdd:pfam08482 82 TLHLLSPAGRPVQVTRDLASFWAGSYAEVRKEMRGRYPKHPWPED 126
|
|
| DEXHc_HrpB |
cd17990 |
DEXH-box helicase domain of ATP-dependent helicase HrpB; HrpB is part of the HrpB-HrpA ... |
6-174 |
6.08e-50 |
|
DEXH-box helicase domain of ATP-dependent helicase HrpB; HrpB is part of the HrpB-HrpA two-partner secretion (TPS) system, a secretion pathway important to the secretion of large virulence-associated proteins. HrpB belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438711 [Multi-domain] Cd Length: 174 Bit Score: 173.29 E-value: 6.08e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERD---SGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGY 82
Cdd:cd17990 1 LPIAAVLPALRAALDAGGQVVLEAPPGAGKTTRVPLALLAELwiaGGKIIVLEPRRVAARAAARRLATLLGEAPGETVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 83 SVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRGGLREDLRLLATSATVAAD 162
Cdd:cd17990 81 RVRGESRVGRRTRVEVVTEGVLLRRLQRDPELSGVGAVILDEFHERSLDADLALALLLEVQQLLRDDLRLLAMSATLDGD 160
|
170
....*....|..
gi 1223776737 163 TLATLLGDAPVV 174
Cdd:cd17990 161 GLAALLPEAPVV 172
|
|
| PRK11131 |
PRK11131 |
ATP-dependent RNA helicase HrpA; Provisional |
5-425 |
9.31e-48 |
|
ATP-dependent RNA helicase HrpA; Provisional
Pssm-ID: 182986 [Multi-domain] Cd Length: 1294 Bit Score: 184.11 E-value: 9.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 5 DLPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVP---LSLAERDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVG 81
Cdd:PRK11131 72 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPkicLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 82 YSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrGGLRE------DLRLLAT 155
Cdd:PRK11131 152 YKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFIL-------GYLKEllprrpDLKVIIT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 156 SATVAADTLATLLGDAPVVTANATTYPVTV------EHIAPARHERIEAtVARAVGKALATTEGDVLAFLPGAGEIARAR 229
Cdd:PRK11131 225 SATIDPERFSRHFNNAPIIEVSGRTYPVEVryrpivEEADDTERDQLQA-IFDAVDELGREGPGDILIFMSGEREIRDTA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 230 RVLD--NLGEVDVLTLHGKLAASGQDAALTPGPRRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVR 307
Cdd:PRK11131 304 DALNklNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 308 VSAAVAEQRAGRAGRQGPGTVFRCWPAHEQASLPPYPEPEIRTAELSSLALELACWSTPDGSGLAWWDRPPEGALAAGRA 387
Cdd:PRK11131 384 ISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVR 463
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1223776737 388 LLRTLEA-----TAPDGTVTRRGRRMAALGLHPRLARALLDGA 425
Cdd:PRK11131 464 LLEELGAittdeQASAYKLTPLGRQLAQLPVDPRLARMVLEAQ 506
|
|
| SF2_C_RHA |
cd18791 |
C-terminal helicase domain of the RNA helicase A (RHA) family helicases; The RNA helicase A ... |
181-332 |
1.41e-43 |
|
C-terminal helicase domain of the RNA helicase A (RHA) family helicases; The RNA helicase A (RHA) family includes RHA, also called DEAH-box helicase 9 (DHX9), DHX8, DHX15-16, DHX32-38, and many others. The RHA family members are DEAD-like helicases belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350178 [Multi-domain] Cd Length: 171 Bit Score: 155.38 E-value: 1.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 181 YPVTV---EHIAPARHERIEATVARAVGKALATT--------EGDVLAFLPGAGEIARARRVL------DNLGEVDVLTL 243
Cdd:cd18791 1 FPVEVyylEDILELLGISSEKEDPDYVDAAVRLIlqihrteePGDILVFLPGQEEIERLCELLreellsPDLGKLLVLPL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 244 HGKLAASGQDAAL--TPGPRRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVRVSAAVAEQRAGRAG 321
Cdd:cd18791 81 HSSLPPEEQQRVFepPPPGVRKVVLATNIAETSITIPGVVYVIDSGLVKEKVYDPRTGLSSLVTVWISKASAEQRAGRAG 160
|
170
....*....|.
gi 1223776737 322 RQGPGTVFRCW 332
Cdd:cd18791 161 RTRPGKCYRLY 171
|
|
| DEXHc_RHA-like |
cd17917 |
DEXH-box helicase domain of DEAD-like helicase RHA family proteins; The RNA helicase A (RHA) ... |
22-175 |
5.51e-31 |
|
DEXH-box helicase domain of DEAD-like helicase RHA family proteins; The RNA helicase A (RHA) family includes RHA, also called DEAH-box helicase 9 (DHX9), DHX8, DHX15-16, DHX32-38, and many others. The RHA family belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438707 [Multi-domain] Cd Length: 159 Bit Score: 119.10 E-value: 5.51e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 22 HGAAVLVAPPGTGKTTIVPLSLAE-----RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGYSVRGERKVSARTRI 96
Cdd:cd17917 1 NQVVVIVGETGSGKTTQVPQFLLEdglakGGKGRIVCTQPRRIAAISVAERVAEERGEKLGEEVGYQIRFESKTSSKTRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 97 EVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrgGL-------REDLRLLATSATVAADTLATLLG 169
Cdd:cd17917 81 KFCTDGILLRELLSDPLLSGYSHVILDEAHERSLDTDFLL--------GLlkdllrkRPDLKVILMSATLDAEKFSSYFG 152
|
....*.
gi 1223776737 170 DAPVVT 175
Cdd:cd17917 153 GAPVIH 158
|
|
| DEXHc_DHX16 |
cd17974 |
DEXH-box helicase domain of DEAH-box helicase 16; DEAH-box helicase 16 (DHX16) is probably ... |
6-173 |
1.97e-21 |
|
DEXH-box helicase domain of DEAH-box helicase 16; DEAH-box helicase 16 (DHX16) is probably involved in pre-mRNA splicing. DHX16 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350732 [Multi-domain] Cd Length: 174 Bit Score: 92.18 E-value: 1.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE----RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVG 81
Cdd:cd17974 1 LPVYPYRDDLLAAVKEHQVLIIVGETGSGKTTQIPQYLHEagytKGGGKIGCTQPRRVAAMSVAARVAEEMGVKLGNEVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 82 YSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER--HLDADLLLALLVDVrggLREDLRLLATSATV 159
Cdd:cd17974 81 YSIRFEDCTSEKTVLKYMTDGMLLREFLTEPDLASYSVMIIDEAHERtlHTDILFGLVKDIAR---FRPDLKLLISSATM 157
|
170
....*....|....
gi 1223776737 160 AADTLATLLGDAPV 173
Cdd:cd17974 158 DAEKFSAFFDDAPI 171
|
|
| DEXHc_DHX34 |
cd17979 |
DEXH-box helicase domain of DEAH-box helicase 34; DEAH-box helicase 34 (DHX34) plays a role in ... |
6-174 |
2.06e-20 |
|
DEXH-box helicase domain of DEAH-box helicase 34; DEAH-box helicase 34 (DHX34) plays a role in the nonsense-mediated decay (NMD), a surveillance mechanism that degrades aberrant mRNAs. DHX34 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350737 [Multi-domain] Cd Length: 170 Bit Score: 89.04 E-value: 2.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGYSVR 85
Cdd:cd17979 1 LPIAQYREKIIELLKTHQVVIVAGDTGCGKSTQVPQYLLAAGFRHIACTQPRRIACISLAKRVAFESLNQYGSKVAYQIR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 86 GERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRgGLREDLRLLATSATVAADTLA 165
Cdd:cd17979 81 FERTRTLATKLLFLTEGLLLRQIQRDASLPQYNVLILDEVHERHLHGDFLLGVLRCLL-RLRPDLKLILMSATINIELFS 159
|
....*....
gi 1223776737 166 TLLGDAPVV 174
Cdd:cd17979 160 GYFEGAPVV 168
|
|
| DEXHc_DHX35 |
cd17980 |
DEXH-box helicase domain of DEAH-box helicase 35; DHX35 plays a role in colorectal cancers and ... |
6-164 |
3.55e-20 |
|
DEXH-box helicase domain of DEAH-box helicase 35; DHX35 plays a role in colorectal cancers and seems to be associated with risk to thyroid cancers. It also has been shown to positively regulate poxviruses, such as Myxoma virus. DEAH-box helicase 35 (DHX35) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350738 [Multi-domain] Cd Length: 185 Bit Score: 89.07 E-value: 3.55e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE---RDSGR-IVVAEPRRLATRAAALRMAALLGEDVGGTVG 81
Cdd:cd17980 1 LPVFKLRNHILYLVENYQTIVIVGETGCGKSTQIPQYLAEagwTAGGRvVGCTQPRRVAAVTVAGRVAEEMGAVLGHEVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 82 YSVRGERKVS-ARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrgGL-------REDLRLL 153
Cdd:cd17980 81 YCIRFDDCTDpQATRIKFLTDGMLVREMMLDPLLTKYSVIMLDEAHERTLYTDILI--------GLlkkiqkkRGDLRLI 152
|
170
....*....|.
gi 1223776737 154 ATSATVAADTL 164
Cdd:cd17980 153 VASATLDAEKF 163
|
|
| DEXHc_DHX38 |
cd17983 |
DEXH-box helicase domain of DEAH-box helicase 38; DEAH-box helicase 38 (DHX38, also known as ... |
6-175 |
1.10e-19 |
|
DEXH-box helicase domain of DEAH-box helicase 38; DEAH-box helicase 38 (DHX38, also known as PRP16) is involved in pre-mRNA splicing. DHX38 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350741 [Multi-domain] Cd Length: 173 Bit Score: 87.13 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE---RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGY 82
Cdd:cd17983 1 LPIFAVRQELLNVIRDNNVVIVVGETGSGKTTQLTQYLHEdgyTDYGMIGCTQPRRVAAMSVAKRVSEEMGVELGEEVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 83 SVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrGGLRE------DLRLLATS 156
Cdd:cd17983 81 AIRFEDCTSENTVIKYMTDGILLRESLRDPDLDKYSAIIMDEAHERSLNTDVLF-------GLLREvvarrrDLKLIVTS 153
|
170
....*....|....*....
gi 1223776737 157 ATVAADTLATLLGDAPVVT 175
Cdd:cd17983 154 ATMDADKFADFFGNVPIFT 172
|
|
| DEXHc_HrpA |
cd17989 |
DEXH-box helicase domain of ATP-dependent RNA helicase HrpA; HrpA is part of the HrpB-HrpA ... |
6-174 |
1.64e-19 |
|
DEXH-box helicase domain of ATP-dependent RNA helicase HrpA; HrpA is part of the HrpB-HrpA two-partner secretion (TPS) system, a secretion pathway important to the secretion of large virulence-associated proteins. HrpA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350747 [Multi-domain] Cd Length: 173 Bit Score: 86.74 E-value: 1.64e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVP---LSLAERDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGY 82
Cdd:cd17989 1 LPVSQKRDEIAKAIAENQVVIIAGETGSGKTTQLPkicLELGRGIRGLIGHTQPRRLAARSVAERIAEELKTELGGAVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 83 SVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrGGLRE------DLRLLATS 156
Cdd:cd17989 81 KVRFTDQTSDETCVKLMTDGILLAETQTDRYLRAYDTIIIDEAHERSLNIDFLL-------GYLKQllprrpDLKVIITS 153
|
170
....*....|....*...
gi 1223776737 157 ATVAADTLATLLGDAPVV 174
Cdd:cd17989 154 ATIDAERFSRHFNNAPII 171
|
|
| DEXHc_DHX33 |
cd17978 |
DEXH-box helicase domain of DEAH-box helicase 33; DEAH-box helicase 33 (DHX33) stimulates RNA ... |
6-174 |
4.34e-19 |
|
DEXH-box helicase domain of DEAH-box helicase 33; DEAH-box helicase 33 (DHX33) stimulates RNA polymerase I transcription of the 47S precursor rRNA. DHX33 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438710 [Multi-domain] Cd Length: 178 Bit Score: 85.48 E-value: 4.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE---RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGY 82
Cdd:cd17978 1 LPIYSARKRLLEELRKHDTVIIIGETGSGKTTQIPQYLYEagfARGGMIGITQPRRVAAVSVAKRVAEEMGVELGQLVGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 83 SVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER--HLDADLLLALLVDVRGGLRE--DLRLLATSAT 158
Cdd:cd17978 81 SVRFDDVTSEETRIKYMTDGMLLREAIGDPLLSKYSVIILDEAHERtvHTDVLFGLVKSAQRRRKEQKlsPLKVIIMSAT 160
|
170
....*....|....*.
gi 1223776737 159 VAADTLATLLGDAPVV 174
Cdd:cd17978 161 LDADLFSEYFNGAPVL 176
|
|
| DEXHc_DHX8 |
cd17971 |
DEXH-box helicase domain of DEAH-box helicase 8; DEAH-box helicase 8 (DHX8 ,also known as ... |
6-175 |
5.59e-19 |
|
DEXH-box helicase domain of DEAH-box helicase 8; DEAH-box helicase 8 (DHX8 ,also known as pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22) acts late in the splicing of pre-mRNA and mediates the release of the spliced mRNA from spliceosomes. DHX8 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350729 [Multi-domain] Cd Length: 179 Bit Score: 85.23 E-value: 5.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAER---DSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGY 82
Cdd:cd17971 6 LPIYKLKEQLIQAVHDNQILVVIGETGSGKTTQITQYLAEAgytSRGKIGCTQPRRVAAMSVAKRVAEEFGCCLGQEVGY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 83 SVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER--HLDADLLLALLVDVRgglREDLRLLATSATVA 160
Cdd:cd17971 86 TIRFEDCTSPETVIKYMTDGMLLRECLIDPDLSQYSVIMLDEAHERtiHTDVLFGLLKKTVQK---RPDLKLIVTSATLD 162
|
170
....*....|....*
gi 1223776737 161 ADTLATLLGDAPVVT 175
Cdd:cd17971 163 AVKFSQYFYEAPIFT 177
|
|
| DEXHc_DHX57 |
cd17985 |
DEXH-box helicase domain of DEAH-box helicase 57; DEAH-box helicase 57 (DHX57) belongs to the ... |
6-175 |
7.18e-18 |
|
DEXH-box helicase domain of DEAH-box helicase 57; DEAH-box helicase 57 (DHX57) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350743 [Multi-domain] Cd Length: 177 Bit Score: 82.20 E-value: 7.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVP-------LSLAERDSGRIVVAEPRRLATRAAALRMAALLGEDVGG 78
Cdd:cd17985 1 LPAWQERETILELLEKHQVLVISGMTGCGKTTQIPqfildnsLQGPPLPVANIICTQPRRISAISVAERVAQERAERVGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 79 TVGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRgGLREDLRLLATSAT 158
Cdd:cd17985 81 SVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDPTLQGVTHVIVDEVHERTEESDFLLLVLKDLM-VQRPDLKVILMSAT 159
|
170
....*....|....*..
gi 1223776737 159 VAADTLATLLGDAPVVT 175
Cdd:cd17985 160 LNAELFSDYFNSCPVIH 176
|
|
| DEXHc_DHX40 |
cd17984 |
DEXH-box helicase domain of DEAH-box helicase 40; DEAH-box helicase 40 (DHX40) belongs to the ... |
32-175 |
5.66e-16 |
|
DEXH-box helicase domain of DEAH-box helicase 40; DEAH-box helicase 40 (DHX40) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350742 [Multi-domain] Cd Length: 178 Bit Score: 76.43 E-value: 5.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 32 GTGKTTIVPLSLAE---RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGTVGYSVRGERKVSARTRIEVVTSGLLVRRV 108
Cdd:cd17984 27 GSGKTTQLPKYLYEagfSQHGMIGVTQPRRVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLRHI 106
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223776737 109 QADPELPGVSTVLIDECHERHLDA----DLLLALLVDVRGGLREDLRLLATSATVAADTLATLLGDAPVVT 175
Cdd:cd17984 107 LADPNLTKYSVIILDEAHERSLTTdilfGLLKKLFQEKSPNRKEHLKVVVMSATLELAKLSAFFGNCPVFD 177
|
|
| DEXHc_DHX37 |
cd17982 |
DEXH-box helicase domain of DEAH-box helicase 37; DHX37 plays a role in the development of the ... |
6-128 |
7.60e-16 |
|
DEXH-box helicase domain of DEAH-box helicase 37; DHX37 plays a role in the development of the human nervous system and has been linked to schizophrenia. It also negatively regulates poxviruses such as Myxoma virus. DEAH-box helicase 37 (DHX37) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350740 [Multi-domain] Cd Length: 191 Bit Score: 76.62 E-value: 7.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE--------RDSGRIVVAEPRRLATRAAALRMAALLGeDVG 77
Cdd:cd17982 1 LPILAEEQEIMEAINENPVVIICGETGSGKTTQVPQFLYEagfgspesDNPGMIGITQPRRVAAVSMAKRVAEELN-VFG 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1223776737 78 GTVGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER 128
Cdd:cd17982 80 KEVSYQIRYDSTVSENTKIKFMTDGVLLKEIQTDFLLRKYSVIIIDEAHER 130
|
|
| DEXHc_YTHDC2 |
cd17987 |
DEXH-box helicase domain of YTH domain containing 2; YTH domain containing 2 (YTHDC2) ... |
6-174 |
1.97e-15 |
|
DEXH-box helicase domain of YTH domain containing 2; YTH domain containing 2 (YTHDC2) regulates mRNA translation and stability via binding to N6-methyladenosine, a modified RNA nucleotide enriched in the stop codons and 3' UTRs of eukaryotic messenger RNAs. YTHDC2 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350745 [Multi-domain] Cd Length: 176 Bit Score: 74.87 E-value: 1.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERDSG-----RIVVAEPRRLATRAAALRMAALLGEDVGGTV 80
Cdd:cd17987 1 LPVFEKQEQIVRIIKENKVVLIVGETGSGKTTQIPQFLLDDCYAngipcRIFCTQPRRLAAIAVAERVAAERGEKIGQTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 81 GYSVRGERKVSARTRIEVVTSGLLVRRVQA-DPELPGVSTVLIDECHERHldaDLLLALLVDVRGGLRE--DLRLLATSA 157
Cdd:cd17987 81 GYQIRLESRVSPKTLLTFCTNGVLLRTLMAgDSALSTVTHVIVDEVHERD---RFSDFLLTKLRDILQKhpNLKLILSSA 157
|
170
....*....|....*..
gi 1223776737 158 TVAADTLATLLGDAPVV 174
Cdd:cd17987 158 ALDVNLFIRYFGSCPVI 174
|
|
| DEXHc_DHX29 |
cd17975 |
DEXH-box helicase domain of DEAH-box helicase 29; DEAH-box helicase 29 (DHX29) is a part of ... |
6-174 |
4.27e-15 |
|
DEXH-box helicase domain of DEAH-box helicase 29; DEAH-box helicase 29 (DHX29) is a part of the 43S pre-initiation complex involved in translation initiation of mRNAs with structured 5'-UTRs. DHX29 is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350733 [Multi-domain] Cd Length: 183 Bit Score: 74.18 E-value: 4.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVP------LSLAERDSGR--IVVAEPRRLATRAAALRMAALLGEDVG 77
Cdd:cd17975 1 LPVFKHRESILETLKRHRVVVVAGETGSGKSTQVPqflledLLLNGGTAQKcnIVCTQPRRISAMSLATRVCEELGCESG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 78 -----GTVGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER--HLDADLLLALLVDVRgglREDL 150
Cdd:cd17975 81 pggknSLCGYQIRMESRTGEATRLLYCTTGVLLRKLQEDGLLSSISHIIVDEVHERsvQSDFLLIILKEILHK---RSDL 157
|
170 180
....*....|....*....|....
gi 1223776737 151 RLLATSATVAADTLATLLGDAPVV 174
Cdd:cd17975 158 HLILMSATVDCEKFSSYFTHCPIL 181
|
|
| DEXHc_DHX36 |
cd17981 |
DEXH-box helicase domain of DEAH-box helicase 36; DEAH-box helicase 36 (DHX36, also known as ... |
6-174 |
8.21e-15 |
|
DEXH-box helicase domain of DEAH-box helicase 36; DEAH-box helicase 36 (DHX36, also known as G4-resolvase 1 or G4R1, MLE-like protein 1 and RNA helicase associated with AU-rich element or RHAU) unwinds a G4-quadruplex in human telomerase RNA. DHX36 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350739 [Multi-domain] Cd Length: 180 Bit Score: 73.34 E-value: 8.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSL----AERDSG---RIVVAEPRRLATRAAALRMAALLGEDV-- 76
Cdd:cd17981 1 LPSYGMKQEIINMIDNNQVTVISGETGCGKTTQVTQFIlddaIERGKGsscRIVCTQPRRISAISVAERVAAERAESCgl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 77 GGTVGYSVRGE-RKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRgGLREDLRLLAT 155
Cdd:cd17981 81 GNSTGYQIRLEsRKPRKQGSILYCTTGIVLQWLQSDPHLSNVSHLVLDEIHERNLQSDVLMGIVKDLL-PFRSDLKVILM 159
|
170
....*....|....*....
gi 1223776737 156 SATVAADTLATLLGDAPVV 174
Cdd:cd17981 160 SATLNAEKFSDYFNNCPMI 178
|
|
| DEXHc_DHX30 |
cd17976 |
DEXH-box helicase domain of DEAH-box helicase 30; DEAH-box helicase 30 (DHX30) plays an ... |
6-174 |
8.28e-15 |
|
DEXH-box helicase domain of DEAH-box helicase 30; DEAH-box helicase 30 (DHX30) plays an important role in the assembly of the mitochondrial large ribosomal subunit. DHX30 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350734 [Multi-domain] Cd Length: 178 Bit Score: 73.29 E-value: 8.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERD--SGR-----IVVAEPRRLATRAAALRMAALLGEDVGG 78
Cdd:cd17976 1 LPVDSHKESILSAIEQNPVVVISGDTGCGKTTRIPQFILEDYvlRGRgarcnVVITQPRRISAVSVAQRVAHELGPNLRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 79 TVGYSVRGERKVSART-RIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRgGLREDLRLLATSA 157
Cdd:cd17976 81 NVGYQVRLESRPPPRGgALLFCTVGVLLKKLQSNPRLEGVSHVIVDEVHERDVNTDFLLILLKGVL-QLNPELRVVLMSA 159
|
170
....*....|....*..
gi 1223776737 158 TVAADTLATLLGDAPVV 174
Cdd:cd17976 160 TGDNQRLSRYFGGCPVV 176
|
|
| DEXHc_DHX15 |
cd17973 |
DEXH-box helicase domain of DEAH-box helicase 15; DEAH-box helicase 15 (DHX15) is a pre-mRNA ... |
5-175 |
1.90e-14 |
|
DEXH-box helicase domain of DEAH-box helicase 15; DEAH-box helicase 15 (DHX15) is a pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA. DHX15 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438709 [Multi-domain] Cd Length: 187 Bit Score: 72.45 E-value: 1.90e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 5 DLPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVP-----LSLAERDSGRIVVAEPRRLATRAAALRMAALLGEDVGGT 79
Cdd:cd17973 12 ELPVWEQKEDFLKLLKNNQILVLVGETGSGKTTQIPqfvldDELPHQPKKLVACTQPRRVAAMSVAQRVAEEMDVKLGEE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 80 VGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrgGL-------REDLRL 152
Cdd:cd17973 92 VGYSIRFEDCSSAKTILKYMTDGMLLREAMSDPLLSRYSVIILDEAHERTLATDILM--------GLlkevvrrRPDLKL 163
|
170 180
....*....|....*....|...
gi 1223776737 153 LATSATVAADTLATLLGDAPVVT 175
Cdd:cd17973 164 IVMSATLDAGKFQKYFDNAPLLK 186
|
|
| DEXHc_DHX9 |
cd17972 |
DEXH-box helicase domain of DEAH-box helicase 9; DEAH-box helicase 9 (DHX9, also known as ... |
6-175 |
1.74e-13 |
|
DEXH-box helicase domain of DEAH-box helicase 9; DEAH-box helicase 9 (DHX9, also known as ATP-dependent RNA helicase A or RHA and leukophysin or LKP) plays an important role in many cellular processes, including regulation of DNA replication, transcription, translation, microRNA biogenesis, RNA processing and transport, and maintenance of genomic stability. DHX9 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350730 [Multi-domain] Cd Length: 234 Bit Score: 70.63 E-value: 1.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAER--DSGR-----IVVAEPRRLATRAAALRMAALLGEDVGG 78
Cdd:cd17972 59 LPVKKFREEILEAISNNPVVIIRGATGCGKTTQVPQYILDDfiQNDRaaecnIVVTQPRRISAVSVAERVAFERGEEVGK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 79 TVGYSVRGErkvSARTR----IEVVTSGLLVRRVQADpeLPGVSTVLIDECHERHLDADLLLALlvdvrggLRE------ 148
Cdd:cd17972 139 SCGYSVRFE---SVLPRphasILFCTVGVLLRKLEAG--IRGISHVIVDEIHERDINTDFLLVV-------LRDvvqayp 206
|
170 180
....*....|....*....|....*..
gi 1223776737 149 DLRLLATSATVAADTLATLLGDAPVVT 175
Cdd:cd17972 207 DLRVILMSATIDTSMFCEYFFNCPVIE 233
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
15-188 |
2.84e-12 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 66.36 E-value: 2.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 15 VHAALDGHGAAVLVAPPGTGKTTIVPLSLAER----DSGRIVVAEPRRLATR----AAALRMAALLGEDVGGTVGYSVRG 86
Cdd:smart00487 17 IEALLSGLRDVILAAPTGSGKTLAALLPALEAlkrgKGGRVLVLVPTRELAEqwaeELKKLGPSLGLKVVGLYGGDSKRE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 87 ERK--VSARTRIEVVTSGLLVRRVQADP-ELPGVSTVLIDECHERHLDADLLLALLVDVRggLREDLRLLATSAT--VAA 161
Cdd:smart00487 97 QLRklESGKTDILVTTPGRLLDLLENDKlSLSNVDLVILDEAHRLLDGGFGDQLEKLLKL--LPKNVQLLLLSATppEEI 174
|
170 180
....*....|....*....|....*..
gi 1223776737 162 DTLATLLGDAPVVTANATTYPVTVEHI 188
Cdd:smart00487 175 ENLLELFLNDPVFIDVGFTPLEPIEQF 201
|
|
| DEXHc_TDRD9 |
cd17988 |
DEXH-box helicase domain of tudor domain containing 9; Tudor domain containing 9 (TDRD9, also ... |
6-128 |
1.58e-10 |
|
DEXH-box helicase domain of tudor domain containing 9; Tudor domain containing 9 (TDRD9, also known as HIG-1or NET54 or C14orf75) is a part of the nuclear PIWI-interacting RNA (piRNA) pathway essential for transposon silencing and male fertility TDRD9 belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350746 [Multi-domain] Cd Length: 180 Bit Score: 60.98 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAERDSGR-----IVVAEPRRLATRAAALRMAALLGEDVGGTV 80
Cdd:cd17988 1 LPIYAKREEILSLIEANSVVIIKGATGCGKTTQLPQFILDHYYKRgkycnIVVTQPRRIAAISIARRVSQEREWTLGSLV 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1223776737 81 GYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHER 128
Cdd:cd17988 81 GYQVGLERPASEETRLIYCTTGVLLQKLINNKTLTEYTHIILDEVHER 128
|
|
| HA2 |
smart00847 |
Helicase associated domain (HA2) Add an annotation; This presumed domain is about 90 amino ... |
392-458 |
1.34e-07 |
|
Helicase associated domain (HA2) Add an annotation; This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Pssm-ID: 214852 [Multi-domain] Cd Length: 82 Bit Score: 49.57 E-value: 1.34e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223776737 392 LEATAPDGTVTRRGRRMAALGLHPRLARALLDGASEVGARAAAEVVALLDGG-----ASGVDVEDELRRLRR 458
Cdd:smart00847 2 LGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGdprpkEKREDADAARRRFAD 73
|
|
| Helicase_C |
pfam00271 |
Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, ... |
230-324 |
1.98e-07 |
|
Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Pssm-ID: 459740 [Multi-domain] Cd Length: 109 Bit Score: 49.90 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 230 RVLDNLGEVDVLTLHGKLAASGQDAALT--PGPRRRVVLATAIAESSLTVPGVRAVVDAGLARvprvdhrrglpglatvr 307
Cdd:pfam00271 31 ELLLEKEGIKVARLHGDLSQEEREEILEdfRKGKIDVLVATDVAERGLDLPDVDLVINYDLPW----------------- 93
|
90
....*....|....*..
gi 1223776737 308 vSAAVAEQRAGRAGRQG 324
Cdd:pfam00271 94 -NPASYIQRIGRAGRAG 109
|
|
| HELICc |
smart00490 |
helicase superfamily c-terminal domain; |
237-324 |
3.27e-07 |
|
helicase superfamily c-terminal domain;
Pssm-ID: 197757 [Multi-domain] Cd Length: 82 Bit Score: 48.36 E-value: 3.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 237 EVDVLTLHGKLAASGQDAALTPGPR--RRVVLATAIAESSLTVPGVRAVVDAGLarvprvdhrrglpglatvRVSAAVAE 314
Cdd:smart00490 11 GIKVARLHGGLSQEEREEILDKFNNgkIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72
|
90
....*....|
gi 1223776737 315 QRAGRAGRQG 324
Cdd:smart00490 73 QRIGRAGRAG 82
|
|
| DEXQc_DQX1 |
cd17986 |
DEXQ-box helicase domain of DEAQ-box RNA dependent ATPase 1; DEAQ-box RNA dependent ATPase 1 ... |
6-174 |
1.61e-06 |
|
DEXQ-box helicase domain of DEAQ-box RNA dependent ATPase 1; DEAQ-box RNA dependent ATPase 1 (DQX1) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350744 [Multi-domain] Cd Length: 177 Bit Score: 49.13 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVA-PPGTGKTTIVP-----LSLAERDS-GRIVVAEPRRLATRAAALRMAALLGEDVGG 78
Cdd:cd17986 1 LPIWAAKFTFLEQLESPSGIVLVSgEPGSGKSTQVPqwcaeFALSRGFQkGQVTVTQPHPLAARSLALRVADEMDLNLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 79 TVGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLALLVDVRGGlREDLRLLATSAT 158
Cdd:cd17986 81 EVGYSIPQEDCTGPNTILRFCWDRLLLQEMTSTPLLGAWGVVVLDEAQERSVASDSLLGLLKDVRLQ-RPELRVVVVTSP 159
|
170
....*....|....*.
gi 1223776737 159 VAADTLATLLGDAPVV 174
Cdd:cd17986 160 ALEPKLRAFWGNPPVV 175
|
|
| HA2 |
pfam04408 |
Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in ... |
388-480 |
6.42e-06 |
|
Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Pssm-ID: 461295 [Multi-domain] Cd Length: 104 Bit Score: 45.69 E-value: 6.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 388 LLRTLEATAPDGTVTRRGRRMAALGLHPRLARALLDGA-----SEVGARAAA---EVVALLDGGASGVDVEDELRRLRRS 459
Cdd:pfam04408 4 LLYYLGALDEDGELTPLGRKMAELPLDPRLAKMLLAAAelgclDEVLTIVAAlsvRDPFVQPNFLDPRSAAKAARRRRRA 83
|
90 100
....*....|....*....|.
gi 1223776737 460 ADGKRWRrdvdRLASLVPDGD 480
Cdd:pfam04408 84 ADEKARA----KFARLDLEGD 100
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
356-702 |
4.56e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 43.85 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 356 LALELACWSTP--DGSGLAWWDRPPEGALAAGRALLRTLEATAPDGTVTRRGRRMAALGLHPRLARALLDGASEVGARAA 433
Cdd:COG3903 543 LALRLAAALAPfwFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAA 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 434 AEVVALLDGGASGVDVEDELRRLRRSADGKRWRRDVDRLASLVPDGDGTPDPAFVVALAHPERLARRRKGGAPVYLLASG 513
Cdd:COG3903 623 LLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAA 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 514 TAAELRDAGGLADAEWLAVAEATREPGRAHAVIRLAARADEKLARTVAAAQLTETEEVTWADGDVLARKIQRLGAITLAE 593
Cdd:COG3903 703 LAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAA 782
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 594 TPLPDPDSAAVRAALLTGIRKEGLGLLRWTDDATRLAHRLAFLHERLGQPWPDVSEQALLSEVDVWLAAELSTATGRADL 673
Cdd:COG3903 783 AAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAA 862
|
330 340
....*....|....*....|....*....
gi 1223776737 674 GRIAVEPALRGLLSWREAARLDELAPDRL 702
Cdd:COG3903 863 AAAAAAALAAAAAAAAAAAAALLAAAAAA 891
|
|
| DEXHc_DHX32 |
cd17977 |
DEXH-box helicase domain of DEAH-box helicase 32; DEAH-box helicase 32 (DHX32) belongs to the ... |
6-176 |
7.90e-04 |
|
DEXH-box helicase domain of DEAH-box helicase 32; DEAH-box helicase 32 (DHX32) belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350735 [Multi-domain] Cd Length: 176 Bit Score: 40.96 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 6 LPIGAVLSDVHAALDGHGAAVLVAPPGTGKTTIVPLSLAE------RDSGRIVVAEPRRLATRAAALRMAALLGEDVGGT 79
Cdd:cd17977 1 LPVWEAKYEFMESLAHNQIVIVSGDAKTGKSSQIPQWCAEyclsahYQHGVVVCTQVHKQTAVWLALRVADEMDVNIGHE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 80 VGYSVRGERKVSARTRIEVVTSGLLVRRVQADPELPGVSTVLIDECHERHLDADLLLallvdvrgGL-------REDLRL 152
Cdd:cd17977 81 VGYVIPFENCCTNETILRYCTDDMLLREMMSDPLLESYGVIILDDAHERTVSTDVLL--------GLlkdvllsRPELKL 152
|
170 180
....*....|....*....|....
gi 1223776737 153 LATSATVAADTLATLLGDAPVVTA 176
Cdd:cd17977 153 VIITCPHLSSKLLSYYGNVPLIEV 176
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
143-521 |
3.67e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 40.77 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 143 RGGLREDLRLLATSATVAADTLATLLGDAPVVTANATTYPVTVEHIAPARHERIEATVARAVGKALATTEGDVLAFLPGA 222
Cdd:COG3903 558 RGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAA 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 223 GEIARARRVLDNLGEVDVLTLHGKLAASGQDAALTPGPRRRVVLATAIAESSLTVPGVRAVVDAGLARVPRVDHRRGLPG 302
Cdd:COG3903 638 AAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAA 717
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 303 LATVRVSAAVAEQRAGRAGRQGPGTVFRCWPAHEQASLPPYPEPEIRTAELSSLALELACWSTPDGSGLAWWDRppeGAL 382
Cdd:COG3903 718 AAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAA---AAA 794
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 383 AAGRALLRTLEATAPDGTVTRRGRRMAALGLHPRLARALLDGASEVGARAAAEVVALLDGGASGVDVEDELRRLRRSADG 462
Cdd:COG3903 795 AAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAA 874
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1223776737 463 KRWRRDVDRLASLVPDGDGTPDPAFVVALAHPERLARRRKGGAPVYLLASGTAAELRDA 521
Cdd:COG3903 875 AAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAAAAAAA 933
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
193-563 |
4.66e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 40.77 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 193 HERIEATVARAVGKALATTEGDVLAFLPGAGEIARARRVLDNLGEVDVLTLHGKLAASGQDAALTPGPRRRVVLATAIAE 272
Cdd:COG3903 565 RRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAA 644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 273 SSLTVPGVRAVVDAGLARVPRVDHRRGLPGLATVRVSAAVAEQRAGRAGRQGPGTVFRCWPAHEQASLPPYPEPEIRTAE 352
Cdd:COG3903 645 AAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAA 724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 353 LSSLALELACWSTPDGSGLAWWDRppEGALAAGRALLRTLEATAPDGTVTRRGRRMAALGLHPRLARALLDGASEVGARA 432
Cdd:COG3903 725 AALLAAAAAAALAAAAAAAALALA--AAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAA 802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 433 AAEVVALLDGGASGVDVEDELRRLRRSADGKRWRRDVDRLASLVPDGDGTPDPAFVVALAHPERLARRRKGGAPVYLLAS 512
Cdd:COG3903 803 AAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAA 882
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1223776737 513 GTAAELRDAGGLADAEWLAVAEATREPGRAHAVIRLAARADEKLARTVAAA 563
Cdd:COG3903 883 ALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAAAAAAA 933
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
26-127 |
8.18e-03 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 37.77 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223776737 26 VLVAPPGTGKTTIVPLSLAERDS---GRIVVAEPRRLATRAAALR--MAALLGEDVGGTVGYSVRGERKVSARTR--IEV 98
Cdd:cd00046 5 LITAPTGSGKTLAALLAALLLLLkkgKKVLVLVPTKALALQTAERlrELFGPGIRVAVLVGGSSAEEREKNKLGDadIII 84
|
90 100 110
....*....|....*....|....*....|.
gi 1223776737 99 VTSGLLVRRVQAD--PELPGVSTVLIDECHE 127
Cdd:cd00046 85 ATPDMLLNLLLREdrLFLKDLKLIIVDEAHA 115
|
|
| |
