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Conserved domains on  [gi|1223470867|ref|WP_091508430|]
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tetratricopeptide repeat protein [Flexibacter flexilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 545-1425 5.77e-37

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 152.55  E-value: 5.77e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  545 GAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYN 624
Cdd:TIGR02917   16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  625 RGKAKQQTGNPQGALEDYTKAIGLDA-NYSEAYESRG--YLRYDQKDYAGAiTDLDKLTDKNKKLYATRGLSKFQT--KD 699
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLLDDeGAAELLALRGlaYLGLGQLELAQK-SYEQALAIDPRSLYAKLGLAQLALaeNR 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  700 YAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:TIGR02917  175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  780 GAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTK 859
Cdd:TIGR02917  255 KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  860 LALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHD 939
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  940 EAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDlavpkpvaapaaakvpakgakpAASAAADVPAQVYEQRG 1019
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK----------------------KLEKKQPDNASLHNLLG 472

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1020 QAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAA 1099
Cdd:TIGR02917  473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1100 LPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGK 1179
Cdd:TIGR02917  553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1180 NSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSA 1259
Cdd:TIGR02917  633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1260 KYFTKDYKGALVDLNKVTEAdYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATIT 1339
Cdd:TIGR02917  713 YLRQKDYPAAIQAYRKALKR-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1340 NLEKAKELGRTDRDLFEHLGLAqYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKD 1419
Cdd:TIGR02917  792 HYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870


                   ....*.
gi 1223470867 1420 KLVFLN 1425
Cdd:TIGR02917  871 AAIRYH 876
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1279-2171 2.26e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 131.36  E-value: 2.26e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1279 ADYKTDEFYANrgSAKYLTK-DYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEH 1357
Cdd:TIGR02917   18 GDQSPEELIEA--AKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1358 LGLAQYEEKDYTAAIENLKAAKE-KGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDY 1436
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1437 KNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAID 1516
Cdd:TIGR02917  176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1517 LGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNiNEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGN 1596
Cdd:TIGR02917  256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1597 RGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYA 1676
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1677 SSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKL 1756
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1757 DPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNdeDLNVLAGRSHLELKEYRES--VPYLTKVVDKGTKDENvyfy 1834
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEeaVAWLEKAAELNPQEIE---- 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1835 rgtAYLNMKEYQVSAKDLNKAIEMglntgpvfanrgearfalkdttgsladLTKATTLSPEDAQLFDRKGLILQMISRHK 1914
Cdd:TIGR02917  569 ---PALALAQYYLGKGQLKKALAI---------------------------LNEAADAAPDSPEAWLMLGRAQLAAGDLN 618

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1915 DAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKAtgLGSKEKLVLFGRGKAKYLLGNNagavaDFDQAIAa 1994
Cdd:TIGR02917  619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA--LELKPDNTEAQIGLAQLLLAAK-----RTESAKK- 690

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1995 dsayvqaytfrgMAKTNLKQYrdavadfnkalsfnPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDkKTYFGSA 2074
Cdd:TIGR02917  691 ------------IAKSLQKQH--------------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLH 743

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2075 LALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRG-------YLQRGQARig 2147
Cdd:TIGR02917  744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlnnlawlYLELKDPR-- 821

                          890       900
                   ....*....|....*....|....
gi 1223470867 2148 ledhegAITDYNKAAEIEPNNANI 2171
Cdd:TIGR02917  822 ------ALEYAERALKLAPNIPAI 839
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
276-512 2.42e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.01  E-value: 2.42e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  276 SLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQ 355
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  356 RANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYA 435
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  436 GAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 512
Cdd:COG0457    162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2119-2250 1.23e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 1.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2119 DAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFD 2198
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEA-----EELLE 75

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 2199 KAIQLNPNFAEAYTSRANMKLQLDEPDlvGACQDWDKAVKLG-NNSAREMLRQ 2250
Cdd:COG4235     76 RALALDPDNPEALYLLGLAAFQQGDYA--EAIAAWQKLLALLpADAPARLLEA 126
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 216-322 2.01e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  216 RAFLSAAASYMEQ-KWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQ 294
Cdd:COG4235     18 EGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                           90       100
                   ....*....|....*....|....*...
gi 1223470867  295 QEQYKEAEKDFDKAVELNIADKDIYFYR 322
Cdd:COG4235     98 QGDYAEAIAAWQKLLALLPADAPARLLE 125
Tryp_SPc super family cl21584
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
 43-176 1.06e-03

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


The actual alignment was detected with superfamily member pfam13365:

Pssm-ID: 473915 [Multi-domain]  Cd Length: 142  Bit Score: 41.64  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867   43 GTGVFVDANGTLLaqT-----DLFVNPNISRIQARNTDGDKYnVANVLSDDASAGLVKFSVSNPsGKPFPFIKVTTTR-L 116
Cdd:pfam13365    1 GTGFVVSSDGLVL--TnahvvDDAEEAAVELVSVVLADGREY-PATVVARDPDLDLALLRVSGD-GRGLPPLPLGDSEpL 76

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  117 KQESNIN-VQYVTDYLEMMKNDAVLS-LAAQIDGY--GYAMQTNSTLSM-HSGSPVLSAENTLVG 176
Cdd:pfam13365   77 VGGERVYaVGYPLGGEKLSLSEGIVSgVDEGRDGGddGRVIQTDAALSPgSSGGPVFDADGRVVG 141
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 545-1425 5.77e-37

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 152.55  E-value: 5.77e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  545 GAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYN 624
Cdd:TIGR02917   16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  625 RGKAKQQTGNPQGALEDYTKAIGLDA-NYSEAYESRG--YLRYDQKDYAGAiTDLDKLTDKNKKLYATRGLSKFQT--KD 699
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLLDDeGAAELLALRGlaYLGLGQLELAQK-SYEQALAIDPRSLYAKLGLAQLALaeNR 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  700 YAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:TIGR02917  175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  780 GAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTK 859
Cdd:TIGR02917  255 KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  860 LALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHD 939
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  940 EAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDlavpkpvaapaaakvpakgakpAASAAADVPAQVYEQRG 1019
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK----------------------KLEKKQPDNASLHNLLG 472

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1020 QAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAA 1099
Cdd:TIGR02917  473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1100 LPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGK 1179
Cdd:TIGR02917  553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1180 NSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSA 1259
Cdd:TIGR02917  633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1260 KYFTKDYKGALVDLNKVTEAdYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATIT 1339
Cdd:TIGR02917  713 YLRQKDYPAAIQAYRKALKR-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1340 NLEKAKELGRTDRDLFEHLGLAqYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKD 1419
Cdd:TIGR02917  792 HYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870


                   ....*.
gi 1223470867 1420 KLVFLN 1425
Cdd:TIGR02917  871 AAIRYH 876
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1279-2171 2.26e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 131.36  E-value: 2.26e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1279 ADYKTDEFYANrgSAKYLTK-DYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEH 1357
Cdd:TIGR02917   18 GDQSPEELIEA--AKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1358 LGLAQYEEKDYTAAIENLKAAKE-KGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDY 1436
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1437 KNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAID 1516
Cdd:TIGR02917  176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1517 LGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNiNEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGN 1596
Cdd:TIGR02917  256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1597 RGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYA 1676
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1677 SSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKL 1756
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1757 DPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNdeDLNVLAGRSHLELKEYRES--VPYLTKVVDKGTKDENvyfy 1834
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEeaVAWLEKAAELNPQEIE---- 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1835 rgtAYLNMKEYQVSAKDLNKAIEMglntgpvfanrgearfalkdttgsladLTKATTLSPEDAQLFDRKGLILQMISRHK 1914
Cdd:TIGR02917  569 ---PALALAQYYLGKGQLKKALAI---------------------------LNEAADAAPDSPEAWLMLGRAQLAAGDLN 618

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1915 DAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKAtgLGSKEKLVLFGRGKAKYLLGNNagavaDFDQAIAa 1994
Cdd:TIGR02917  619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA--LELKPDNTEAQIGLAQLLLAAK-----RTESAKK- 690

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1995 dsayvqaytfrgMAKTNLKQYrdavadfnkalsfnPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDkKTYFGSA 2074
Cdd:TIGR02917  691 ------------IAKSLQKQH--------------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLH 743

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2075 LALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRG-------YLQRGQARig 2147
Cdd:TIGR02917  744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlnnlawlYLELKDPR-- 821

                          890       900
                   ....*....|....*....|....
gi 1223470867 2148 ledhegAITDYNKAAEIEPNNANI 2171
Cdd:TIGR02917  822 ------ALEYAERALKLAPNIPAI 839
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
276-512 2.42e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.01  E-value: 2.42e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  276 SLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQ 355
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  356 RANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYA 435
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  436 GAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 512
Cdd:COG0457    162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
551-784 4.67e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 106.24  E-value: 4.67e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  551 AHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQ 630
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  631 QTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDK---LTDKNKKLYATRGLSKFQTKDYAGAIADL 707
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERaleLDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  708 GEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQ 784
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1924-2165 2.25e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.25e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1924 VSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYT 2003
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2004 FRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSY 2083
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2084 AEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAE 2163
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ..
gi 1223470867 2164 IE 2165
Cdd:COG0457    241 YQ 242
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2119-2250 1.23e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 1.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2119 DAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFD 2198
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEA-----EELLE 75

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 2199 KAIQLNPNFAEAYTSRANMKLQLDEPDlvGACQDWDKAVKLG-NNSAREMLRQ 2250
Cdd:COG4235     76 RALALDPDNPEALYLLGLAAFQQGDYA--EAIAAWQKLLALLpADAPARLLEA 126
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 756-853 3.36e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.50  E-value: 3.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  756 EHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKD 835
Cdd:PLN03088     6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85

                           90
                   ....*....|....*...
gi 1223470867  836 YKGAAADFEKAKGLGSSD 853
Cdd:PLN03088    86 YQTAKAALEKGASLAPGD 103
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 250-414 3.41e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 3.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  250 TYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYEN 329
Cdd:TIGR00990  333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  330 KEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQ 409
Cdd:TIGR00990  413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492


                   ....*
gi 1223470867  410 AIALD 414
Cdd:TIGR00990  493 AIELE 497
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1265-1415 1.67e-07

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 53.92  E-value: 1.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1265 DYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKA 1344
Cdd:NF040959    52 RYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEA 131

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1345 KELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTL 1415
Cdd:NF040959   132 LEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMEL 202
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 2149-2220 4.19e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 51.33  E-value: 4.19e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 2149 EDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSR--ANMKLQ 2220
Cdd:PLN03088    16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEA-----VADANKAIELDPSLAKAYLRKgtACMKLE 84
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 216-322 2.01e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  216 RAFLSAAASYMEQ-KWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQ 294
Cdd:COG4235     18 EGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                           90       100
                   ....*....|....*....|....*...
gi 1223470867  295 QEQYKEAEKDFDKAVELNIADKDIYFYR 322
Cdd:COG4235     98 QGDYAEAIAAWQKLLALLPADAPARLLE 125
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 1990-2062 6.49e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 48.54  E-value: 6.49e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1990 QAIAADSAYvQAYTfRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVN 2062
Cdd:PRK11447   262 QKQLADPAF-RARA-QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332
Trypsin_2 pfam13365
Trypsin-like peptidase domain; This family includes trypsin-like peptidase domains.
 43-176 1.06e-03

Trypsin-like peptidase domain; This family includes trypsin-like peptidase domains.


Pssm-ID: 433149 [Multi-domain]  Cd Length: 142  Bit Score: 41.64  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867   43 GTGVFVDANGTLLaqT-----DLFVNPNISRIQARNTDGDKYnVANVLSDDASAGLVKFSVSNPsGKPFPFIKVTTTR-L 116
Cdd:pfam13365    1 GTGFVVSSDGLVL--TnahvvDDAEEAAVELVSVVLADGREY-PATVVARDPDLDLALLRVSGD-GRGLPPLPLGDSEpL 76

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  117 KQESNIN-VQYVTDYLEMMKNDAVLS-LAAQIDGY--GYAMQTNSTLSM-HSGSPVLSAENTLVG 176
Cdd:pfam13365   77 VGGERVYaVGYPLGGEKLSLSEGIVSgVDEGRDGGddGRVIQTDAALSPgSSGGPVFDADGRVVG 141
TPR_11 pfam13414
TPR repeat;
2142-2178 1.46e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 1.46e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1223470867 2142 GQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALA 2178
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLA 37
TPR_11 pfam13414
TPR repeat;
558-598 1.86e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 1.86e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1223470867  558 GKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSL 598
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1047-1377 3.10e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 3.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1047 EAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDP--KLFY----HR 1120
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyeKYLYlgqlSG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1121 GNElvAQKQYAKAIEDLNKAvtggisdvtvhynrgLALYEQQDYKNAVTDLELAKKMgknSKALYAM----LGDAAFELE 1196
Cdd:cd24142     81 GEE--ALQYYEKGIEILEEE---------------LQALQAASAEAEEEAEELKRKL---SSALCALaeiyMTDLCDEPD 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1197 EYEQALSALKQAQKLGATDKETT-----YKIGISEFEtQAYAAAIQTLTKaqqagvseqrllfakgsakyfTKDYKGALV 1271
Cdd:cd24142    141 AEQRCEELITKALELDPTNPEALqtlasLRISQQRPD-EAKEALRRSLEL---------------------WKDLKEEDE 198

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1272 DLNKVTEADYKTDEFYANRGS-AKYLT--KDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYkatitNLEKAKELG 1348
Cdd:cd24142    199 EEAEEDEAEEEDVPSYEFRISlAKLLIelEMYEEALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEK-----EQEEAAELL 273

                          330       340       350
                   ....*....|....*....|....*....|...
gi 1223470867 1349 RTDRDLFEH----LGLAQYEEKDYTAAIENLKA 1377
Cdd:cd24142    274 RDARELLEKalklYEKLEYEDEELLEHVEELLA 306
TPR_1 pfam00515
Tetratricopeptide repeat;
282-312 4.12e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.12e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1223470867  282 PNLYLWRGLALYQQEQYKEAEKDFDKAVELN 312
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 356-443 8.02e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.93  E-value: 8.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  356 RANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYA 435
Cdd:PLN03088     8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87


                   ....*...
gi 1223470867  436 GAIADLDK 443
Cdd:PLN03088    88 TAKAALEK 95
 
Name Accession Description Interval E-value
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 545-1425 5.77e-37

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 152.55  E-value: 5.77e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  545 GAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYN 624
Cdd:TIGR02917   16 ACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  625 RGKAKQQTGNPQGALEDYTKAIGLDA-NYSEAYESRG--YLRYDQKDYAGAiTDLDKLTDKNKKLYATRGLSKFQT--KD 699
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLLDDeGAAELLALRGlaYLGLGQLELAQK-SYEQALAIDPRSLYAKLGLAQLALaeNR 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  700 YAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:TIGR02917  175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  780 GAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTK 859
Cdd:TIGR02917  255 KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  860 LALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHD 939
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  940 EAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDlavpkpvaapaaakvpakgakpAASAAADVPAQVYEQRG 1019
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK----------------------KLEKKQPDNASLHNLLG 472

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1020 QAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAA 1099
Cdd:TIGR02917  473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1100 LPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGK 1179
Cdd:TIGR02917  553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1180 NSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSA 1259
Cdd:TIGR02917  633 DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1260 KYFTKDYKGALVDLNKVTEAdYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATIT 1339
Cdd:TIGR02917  713 YLRQKDYPAAIQAYRKALKR-APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1340 NLEKAKELGRTDRDLFEHLGLAqYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKD 1419
Cdd:TIGR02917  792 HYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870


                   ....*.
gi 1223470867 1420 KLVFLN 1425
Cdd:TIGR02917  871 AAIRYH 876
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 459-1361 1.91e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 131.74  E-value: 1.91e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  459 KYQTK-DYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAE 537
Cdd:TIGR02917   31 SYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVL 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  538 AAYT-QAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYdrGMARYSL--KDYAGAIADYDKAVSL 614
Cdd:TIGR02917  111 DELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL--GLAQLALaeNRFDEARALIDEVLTA 188

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  615 --GVSEALVFynRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDK-NKKLYAT-- 689
Cdd:TIGR02917  189 dpGNVDALLL--KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKaPNSPLAHyl 266

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  690 RGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYK 769
Cdd:TIGR02917  267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  770 LAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGL 849
Cdd:TIGR02917  347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  850 GSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSvslmrg 929
Cdd:TIGR02917  427 DPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP------ 500

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  930 lSYYHLNKHDEAERDLSQAIARGEKSTEVYAHlgysryalknYTGAIAAFdlavpkpvaapaaakvpakgakpaasaaad 1009
Cdd:TIGR02917  501 -AAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILAL------------------------------ 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1010 vpAQVYEQRGqakfftkDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVS 1089
Cdd:TIGR02917  540 --AGLYLRTG-------NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1090 YCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAvtggisdVTVHYNRGLALYEQQDYKNAVT 1169
Cdd:TIGR02917  611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA-------LELKPDNTEAQIGLAQLLLAAK 683

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1170 DLELAKKMGK-------NSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDkETTYKIGISEFETQAYAAAIQTLTKA 1242
Cdd:TIGR02917  684 RTESAKKIAKslqkqhpKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAW 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1243 QQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEAdYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFF 1322
Cdd:TIGR02917  763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-APDNAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILD 841

                          890       900       910
                   ....*....|....*....|....*....|....*....
gi 1223470867 1323 FLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLA 1361
Cdd:TIGR02917  842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1279-2171 2.26e-30

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 131.36  E-value: 2.26e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1279 ADYKTDEFYANrgSAKYLTK-DYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEH 1357
Cdd:TIGR02917   18 GDQSPEELIEA--AKSYLQKnKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1358 LGLAQYEEKDYTAAIENLKAAKE-KGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDY 1436
Cdd:TIGR02917   96 LARAYLLQGKFQQVLDELPGKTLlDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1437 KNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAID 1516
Cdd:TIGR02917  176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1517 LGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNiNEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGN 1596
Cdd:TIGR02917  256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRL 334

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1597 RGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYA 1676
Cdd:TIGR02917  335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1677 SSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKL 1756
Cdd:TIGR02917  415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1757 DPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNdeDLNVLAGRSHLELKEYRES--VPYLTKVVDKGTKDENvyfy 1834
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEeaVAWLEKAAELNPQEIE---- 568

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1835 rgtAYLNMKEYQVSAKDLNKAIEMglntgpvfanrgearfalkdttgsladLTKATTLSPEDAQLFDRKGLILQMISRHK 1914
Cdd:TIGR02917  569 ---PALALAQYYLGKGQLKKALAI---------------------------LNEAADAAPDSPEAWLMLGRAQLAAGDLN 618

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1915 DAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKAtgLGSKEKLVLFGRGKAKYLLGNNagavaDFDQAIAa 1994
Cdd:TIGR02917  619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA--LELKPDNTEAQIGLAQLLLAAK-----RTESAKK- 690

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1995 dsayvqaytfrgMAKTNLKQYrdavadfnkalsfnPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDkKTYFGSA 2074
Cdd:TIGR02917  691 ------------IAKSLQKQH--------------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLH 743

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2075 LALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRG-------YLQRGQARig 2147
Cdd:TIGR02917  744 RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlnnlawlYLELKDPR-- 821

                          890       900
                   ....*....|....*....|....
gi 1223470867 2148 ledhegAITDYNKAAEIEPNNANI 2171
Cdd:TIGR02917  822 ------ALEYAERALKLAPNIPAI 839
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 246-1172 2.06e-29

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 128.28  E-value: 2.06e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  246 KNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADK-DIYFYRGN 324
Cdd:TIGR02917   54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAaELLALRGL 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  325 VRYENKEYAGAIADYTKAeqLGVADKKLYVQRANSRFRKE--DYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQG 402
Cdd:TIGR02917  134 AYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIEL 211

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  403 ALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDK-NKKLYVT--RGLAKYQTKDYNGAIADLGEAEKAG 479
Cdd:TIGR02917  212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKaPNSPLAHylKALVDFQKKNYEDARETLQDALKSA 291

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  480 ATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGK 559
Cdd:TIGR02917  292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGE 371

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  560 SRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLgvsealvfynrgkakqqtgNPQGAL 639
Cdd:TIGR02917  372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL-------------------DPELGR 432

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  640 EDYTKAIgldanyseayesrGYLRYDQKDYAGAITD-LDKLTDKNKKLYATRGLSKFQTKDYAGAIADLgeaEKAGATDK 718
Cdd:TIGR02917  433 ADLLLIL-------------SYLRSGQFDKALAAAKkLEKKQPDNASLHNLLGAIYLGKGDLAKAREAF---EKALSIEP 496

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  719 EVYLAkglsLFELKNYAEAETELAKAIeageksqkvfehladARFEQnkyklAEAAYTQAIGAGLQTAHVFERRGKSrfe 798
Cdd:TIGR02917  497 DFFPA----AANLARIDIQEGNPDDAI---------------QRFEK-----VLTIDPKNLRAILALAGLYLRTGNE--- 549

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  799 qknyADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELT 878
Cdd:TIGR02917  550 ----EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  879 KAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEV 958
Cdd:TIGR02917  626 KLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG 705

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  959 YAHLGYSRYALKNYTGAIAAFDLAVPKPVAapaaakvpakgakpaasaaadvpAQVYEQRGQAKFFTKDYAGAIADLTKA 1038
Cdd:TIGR02917  706 FELEGDLYLRQKDYPAAIQAYRKALKRAPS-----------------------SQNAIKLHRALLASGNTAEAVKTLEAW 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1039 IGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQfTAALPDLDKAISLGATDPKLFY 1118
Cdd:TIGR02917  763 LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILD 841

                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1119 HRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLE 1172
Cdd:TIGR02917  842 TLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
276-512 2.42e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.01  E-value: 2.42e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  276 SLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQ 355
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  356 RANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYA 435
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  436 GAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 512
Cdd:COG0457    162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
551-784 4.67e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 106.24  E-value: 4.67e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  551 AHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQ 630
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  631 QTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDK---LTDKNKKLYATRGLSKFQTKDYAGAIADL 707
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERaleLDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  708 GEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQ 784
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
244-484 5.60e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 106.24  E-value: 5.60e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  244 NAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRG 323
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  324 NVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGA 403
Cdd:COG0457     84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  404 LEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDK 483
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQY 243


                   .
gi 1223470867  484 E 484
Cdd:COG0457    244 R 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
522-747 2.48e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.32  E-value: 2.48e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  522 HLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDY 601
Cdd:COG0457     13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  602 AGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTD 681
Cdd:COG0457     93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867  682 KNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 747
Cdd:COG0457    173 AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1733-2248 3.33e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 111.33  E-value: 3.33e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1733 RGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYR 1812
Cdd:TIGR02917   28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1813 ESVPYLTKVvdKGTKDEN---VYFYRGTAYLNMKEYQVSAKDLNKAIEmgLNTGPVFANRGEARFAL--KDTTGSLADLT 1887
Cdd:TIGR02917  108 QVLDELPGK--TLLDDEGaaeLLALRGLAYLGLGQLELAQKSYEQALA--IDPRSLYAKLGLAQLALaeNRFDEARALID 183

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1888 KATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLV 1967
Cdd:TIGR02917  184 EVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLA 263

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1968 LFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQE 2047
Cdd:TIGR02917  264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2048 DYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDY 2127
Cdd:TIGR02917  344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA 423

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2128 IKLSPKSIR-------GYLQRGQArigledhEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTtdAGVKSSfadFDKA 2200
Cdd:TIGR02917  424 AQLDPELGRadlllilSYLRSGQF-------DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL--AKAREA---FEKA 491

                          490       500       510       520
                   ....*....|....*....|....*....|....*....|....*...
gi 1223470867 2201 IQLNPNFAEAYTSRANMKLQLDEPDlvGACQDWDKAVKLGNNSAREML 2248
Cdd:TIGR02917  492 LSIEPDFFPAAANLARIDIQEGNPD--DAIQRFEKVLTIDPKNLRAIL 537
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1924-2165 2.25e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.62  E-value: 2.25e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1924 VSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYT 2003
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2004 FRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSY 2083
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2084 AEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAE 2163
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ..
gi 1223470867 2164 IE 2165
Cdd:COG0457    241 YQ 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
309-549 2.72e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 101.24  E-value: 2.72e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  309 VELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYN 388
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  389 NRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDY 465
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERaleLDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  466 NGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIG 545
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ....
gi 1223470867  546 AGLQ 549
Cdd:COG0457    241 YQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
484-688 4.10e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 4.10e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  484 EVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYE 563
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  564 QKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYT 643
Cdd:COG0457     89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1223470867  644 KAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKKLYA 688
Cdd:COG0457    169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1012-1245 1.30e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.31  E-value: 1.30e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDL 1171
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1172 ELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQA 1245
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1992-2180 1.90e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.93  E-value: 1.90e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1992 IAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYF 2071
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2072 GSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDH 2151
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180
                   ....*....|....*....|....*....
gi 1223470867 2152 EGAITDYNKAAEIEPNNANIYYYRALAKA 2180
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALA 189
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1892-2057 2.22e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.54  E-value: 2.22e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1892 LSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGR 1971
Cdd:COG0457      3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1972 GKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEK 2051
Cdd:COG0457     83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162


                   ....*.
gi 1223470867 2052 AISNFD 2057
Cdd:COG0457    163 ALELLE 168
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1012-1917 3.82e-22

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 104.78  E-value: 3.82e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGqakfftkDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSD-LDLHTRLAVSY 1090
Cdd:TIGR02917   63 GKIYLALG-------DYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGaAELLALRGLAY 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1091 CELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTD 1170
Cdd:TIGR02917  136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1171 LELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQ 1250
Cdd:TIGR02917  216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1251 RLLFAKGSAKYFTKDYKGALVDLNKVTeaDYKTDEFYANRGSAKYL--TKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSH 1328
Cdd:TIGR02917  296 PALLLAGASEYQLGNLEQAYQYLNQIL--KYAPNSHQARRLLASIQlrLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1329 FQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALpn 1408
Cdd:TIGR02917  374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL-- 451

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1409 lnqavtlgskdklvflnrGNARYNQKDYKNSitdysqaitlgvntAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLP 1488
Cdd:TIGR02917  452 ------------------AAAKKLEKKQPDN--------------ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF 499

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1489 DAYANrgfikwvqkdykaaaddaTKAIDLGAQDPLAyyvrGNARYE-----LKDYKGATEDLVKVTPADNiNEKISFSNL 1563
Cdd:TIGR02917  500 PAAAN------------------LARIDIQEGNPDD----AIQRFEkvltiDPKNLRAILALAGLYLRTG-NEEEAVAWL 556

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1564 GNAyfelkdYTAANTALSKAVELGvsdvkvlgnrgesRYMLKDYEA--AITDFNKVIAQEPKNARALHLRGQSKFVKNDF 1641
Cdd:TIGR02917  557 EKA------AELNPQEIEPALALA-------------QYYLGKGQLkkALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1642 AGAVADLTeaeaagvKVVELYTNRGIAQYET-------KNYASSLTDLNKAIDL-GNNTDAIyFHRGNAKFRTNDLTGAV 1713
Cdd:TIGR02917  618 NKAVSSFK-------KLLALQPDSALALLLLadayavmKNYAKAITSLKRALELkPDNTEAQ-IGLAQLLLAAKRTESAK 689

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1714 ADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDP-KYIKAFSNRALSRFKTAdyRGALTDLTTALQYSP 1792
Cdd:TIGR02917  690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPsSQNAIKLHRALLASGNT--AEAVKTLEAWLKTHP 767

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1793 NDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMK-----EYQVSAKDLNKAIEMGLNT-GPVF 1866
Cdd:TIGR02917  768 NDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKdpralEYAERALKLAPNIPAILDTlGWLL 847

                          890       900       910       920       930
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1867 ANRGEARFALKdttgslaDLTKATTLSPEDAQLFDRKGLILQMISRHKDAI 1917
Cdd:TIGR02917  848 VEKGEADRALP-------LLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1967-2178 4.98e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 4.98e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1967 VLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQ 2046
Cdd:COG0457     10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2047 EDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSD 2126
Cdd:COG0457     90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 2127 YIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALA 2178
Cdd:COG0457    170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1045-1282 6.76e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.00  E-value: 6.76e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1045 NTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNEL 1124
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1125 VAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSA 1204
Cdd:COG0457     87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1205 LKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYK 1282
Cdd:COG0457    167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
578-819 7.02e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.00  E-value: 7.02e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  578 IELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYE 657
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  658 SRGYLRYDQKDYAGAITDLDK---LTDKNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNY 734
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKaleLDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  735 AEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIE 814
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ....*
gi 1223470867  815 LGANE 819
Cdd:COG0457    241 YQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
813-1057 8.74e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.00  E-value: 8.74e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  813 IELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYK 892
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  893 QRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKNY 972
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  973 TGAIAAFDLAVPKPVAAPAAAKVPAKGAKPAASAAADVPAQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNR 1052
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ....*
gi 1223470867 1053 GMARY 1057
Cdd:COG0457    241 YQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 455-710 1.06e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.49  E-value: 1.06e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  455 RGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYK 534
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  535 SAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSL 614
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  615 GVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKKLYATRGLSK 694
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                          250
                   ....*....|....*...
gi 1223470867  695 F--QTKDYAGAIADLGEA 710
Cdd:COG2956    254 LleRKEGLEAALALLERQ 271
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1666-2121 4.32e-21

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 100.44  E-value: 4.32e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1666 GIAQYETKNYASSLTDLnkaidlgnntdaiyfhrGNAKFRTNDLTGAVADYDKAQQMGyQSAILFNNRGKAKQLQNLFPA 1745
Cdd:TIGR00990  117 NLSEEERKKYAAKLKEK-----------------GNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEK 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1746 SIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLT-TALQYSPNDEDLNVLAGRShleLKEYRESvPYLTKVVDK 1824
Cdd:TIGR00990  179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTaSCIIDGFRNEQSAQAVERL---LKKFAES-KAKEILETK 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1825 GTKDENVYFYrgTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRG----EARFALKDTTGSLAdLTKATT---LSPEDA 1897
Cdd:TIGR00990  255 PENLPSVTFV--GNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGlkspESKADESYEEAARA-FEKALDlgkLGEKEA 331

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1898 QLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYL 1977
Cdd:TIGR00990  332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1978 LGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFD 2057
Cdd:TIGR00990  412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 2058 LAIVNKFTDKKTYF------GSALALYR-LQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAI 2121
Cdd:TIGR00990  492 TAIELEKETKPMYMnvlpliNKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 690-951 1.82e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 1.82e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  690 RGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYK 769
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  770 LAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGL 849
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  850 GSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSrSVSLMRG 929
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALA 252

                          250       260
                   ....*....|....*....|..
gi 1223470867  930 LSYYHLNKHDEAERDLSQAIAR 951
Cdd:COG2956    253 DLLERKEGLEAALALLERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 486-747 2.14e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 93.64  E-value: 2.14e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  486 YLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQK 565
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  566 NYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKA 645
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  646 IGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKK---LYATRGLSKFQTKDYAGAIADLGEAEKAGATDkEVYL 722
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDylpALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLL 249

                          250       260
                   ....*....|....*....|....*
gi 1223470867  723 AKGLSLFELKNYAEAETELAKAIEA 747
Cdd:COG2956    250 ALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1856-2086 2.39e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 92.76  E-value: 2.39e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1856 IEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYG 1935
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1936 HRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQY 2015
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 2016 RDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEA 2086
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 217-950 3.41e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 98.23  E-value: 3.41e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  217 AFLSAAASYMEQ-KWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQ 295
Cdd:TIGR02917  161 AKLGLAQLALAEnRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEA 240

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  296 EQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAeqlgvadkklyVQRANSRFRKEDYAGAIA---- 371
Cdd:TIGR02917  241 GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA-----------LKSAPEYLPALLLAGASEyqlg 309

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  372 DYDKAVS-LGVSEALIYNNRgKAKQLTSNAQGALEDYTQAIALDAAYLKAYENR-------GFLRYDQKDYAGAIADLDK 443
Cdd:TIGR02917  310 NLEQAYQyLNQILKYAPNSH-QARRLLASIQLRLGRVDEAIATLSPALGLDPDDpaalsllGEAYLALGDFEKAAEYLAK 388

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  444 ---LTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAetelAKAIEAGEKSQ--- 517
Cdd:TIGR02917  389 ateLDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA----LAAAKKLEKKQpdn 464

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  518 -NVFEHLADARFEQNKYKSAEAAYTQAIgaGLQTAHVFERRGKSR--YEQKNYTEAIADYSKAIELGTSNKEVYydRGMA 594
Cdd:TIGR02917  465 aSLHNLLGAIYLGKGDLAKAREAFEKAL--SIEPDFFPAAANLARidIQEGNPDDAIQRFEKVLTIDPKNLRAI--LALA 540

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  595 RYSLK--DYAGAIADYDKAVSLGVSE-----ALVFYNRGKakqqtGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQK 667
Cdd:TIGR02917  541 GLYLRtgNEEEAVAWLEKAAELNPQEiepalALAQYYLGK-----GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  668 DYAGAITDLDKLTDKN-KKLYATRGLSKFQT--KDYAGAIadlGEAEKAGATDKEVYLAK-GLSLFELK-NYAEAETELA 742
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQpDSALALLLLADAYAvmKNYAKAI---TSLKRALELKPDNTEAQiGLAQLLLAaKRTESAKKIA 692

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  743 KAIEAG-EKSQKVFEHLADARFEQNKYKLAEAAYTQAI--------GAGLQTAHVFerrgksrfeQKNYADANADLSKAI 813
Cdd:TIGR02917  693 KSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKALkrapssqnAIKLHRALLA---------SGNTAEAVKTLEAWL 763

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  814 ELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQyAAALPELTKAISLGATEPRIYKQ 893
Cdd:TIGR02917  764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDT 842

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  894 RATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAeRDLSQAIA 950
Cdd:TIGR02917  843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1553-1784 3.50e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.99  E-value: 3.50e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1553 NINEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRG 1632
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1633 QSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGA 1712
Cdd:COG0457     84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1713 VADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDL 1784
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 721-960 3.81e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.87  E-value: 3.81e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  721 YLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQK 800
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  801 NYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKA 880
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  881 ISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYA 960
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
452-679 3.89e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.99  E-value: 3.89e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  452 YVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQN 531
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  532 KYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKA 611
Cdd:COG0457     91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867  612 VSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKL 679
Cdd:COG0457    171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1827-2053 4.44e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.99  E-value: 4.44e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1827 KDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLI 1906
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1907 LQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVA 1986
Cdd:COG0457     86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867 1987 DFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAI 2053
Cdd:COG0457    166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
786-1022 7.28e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.22  E-value: 7.28e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  786 AHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYC 865
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  866 ELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDL 945
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  946 SQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDLAVPKPVAAPAAAKVPAKGAKPAASAAADVPAQVYEQRGQAK 1022
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
719-917 1.48e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.45  E-value: 1.48e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  719 EVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFE 798
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  799 QKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELT 878
Cdd:COG0457     89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168

                          170       180       190
                   ....*....|....*....|....*....|....*....
gi 1223470867  879 KAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG0457    169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
487-678 2.04e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 89.20  E-value: 2.04e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  487 LAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFE---RRGKSRYE 563
Cdd:COG4785      6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQlyyERGVAYDS 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  564 QKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYT 643
Cdd:COG4785     86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1223470867  644 KAIGLDANYSEAYESRgYLRYDQKDYAGAITDLDK 678
Cdd:COG4785    166 KALELDPNDPERALWL-YLAERKLDPEKALALLLE 199
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1969-2212 2.12e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.56  E-value: 2.12e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1969 FGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQED 2048
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2049 YEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYI 2128
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2129 KLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFA 2208
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA-----LELLRKALELDPSDD 246


                   ....
gi 1223470867 2209 EAYT 2212
Cdd:COG2956    247 LLLA 250
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1584-1813 4.46e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.91  E-value: 4.46e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1584 VELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYT 1663
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1664 NRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLF 1743
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1744 PASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRE 1813
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 248-512 6.50e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 89.02  E-value: 6.50e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  248 GSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRY 327
Cdd:COG2956      8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  328 ENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDY 407
Cdd:COG2956     88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  408 TQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKK---LYVTRGLAKYQTKDYNGAIADLGEAEKAGATDkE 484
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDylpALPRLAELYEKLGDPEEALELLRKALELDPSD-D 246

                          250       260
                   ....*....|....*....|....*...
gi 1223470867  485 VYLAKGLSLFELKNYAEAETELAKAIEA 512
Cdd:COG2956    247 LLLALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1079-1314 7.88e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 88.14  E-value: 7.88e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1079 DLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLAL 1158
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1159 YEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQT 1238
Cdd:COG0457     87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1239 LTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTK 1314
Cdd:COG0457    167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
757-978 1.03e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.75  E-value: 1.03e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  757 HLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDY 836
Cdd:COG0457     13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  837 KGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAE 916
Cdd:COG0457     93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  917 LGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAA 978
Cdd:COG0457    173 AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
687-917 1.08e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.75  E-value: 1.08e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  687 YATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQN 766
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  767 KYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKA 846
Cdd:COG0457     91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  847 KGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG0457    171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1515-1757 2.32e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.98  E-value: 2.32e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1515 IDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTpADNINEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVL 1594
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKAL-ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1595 GNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKN 1674
Cdd:COG0457     80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1675 YASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEAL 1754
Cdd:COG0457    160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239


                   ...
gi 1223470867 1755 KLD 1757
Cdd:COG0457    240 LYQ 242
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
221-444 2.51e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 2.51e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  221 AAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKE 300
Cdd:COG0457     15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEE 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  301 AEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLG 380
Cdd:COG0457     95 ALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867  381 VSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKL 444
Cdd:COG0457    175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1316-1545 2.68e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 2.68e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1316 KNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNA 1395
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1396 QAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALA 1475
Cdd:COG0457     86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1476 DFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDL 1545
Cdd:COG0457    166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1788-2021 2.86e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.60  E-value: 2.86e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1788 LQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFA 1867
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1868 NRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEY 1947
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1948 EPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVAD 2021
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1754-2000 3.30e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.21  E-value: 3.30e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1754 LKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYF 1833
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1834 YRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRH 1913
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1914 KDAIEDFSKsvSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIA 1993
Cdd:COG0457    161 EEALELLEK--LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                   ....*..
gi 1223470867 1994 ADSAYVQ 2000
Cdd:COG0457    239 ALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1659-1861 4.03e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.21  E-value: 4.03e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1659 VELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQ 1738
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1739 LQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYL 1818
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1223470867 1819 TKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLN 1861
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKK 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
411-652 4.30e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.21  E-value: 4.30e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  411 IALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYL 487
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKaleLDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  488 AKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNY 567
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  568 TEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIG 647
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   ....*
gi 1223470867  648 LDANY 652
Cdd:COG0457    241 YQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1686-1857 5.45e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 85.83  E-value: 5.45e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1686 IDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFS 1765
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1766 NRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEY 1845
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170
                   ....*....|..
gi 1223470867 1846 QVSAKDLNKAIE 1857
Cdd:COG0457    161 EEALELLEKLEA 172
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
244-412 9.80e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 84.58  E-value: 9.80e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  244 NAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRG 323
Cdd:COG4785     69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  324 NVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRfRKEDYAGAIADYDKAvslgvsealiynnRGKAKQLTSNAQGA 403
Cdd:COG4785    149 IALYYLGRYELAIADLEKALELDPNDPERALWLYLAE-RKLDPEKALALLLED-------------WATAYLLQGDTEEA 214


                   ....*....
gi 1223470867  404 LEDYTQAIA 412
Cdd:COG4785    215 RELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 614-916 9.95e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.55  E-value: 9.95e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  614 LGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKklyatrgls 693
Cdd:COG2956      3 LPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP--------- 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  694 kfqtkDYAGAIADLGEaekagatdkeVYLAKGLslfelknYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEA 773
Cdd:COG2956     74 -----DRAEALLELAQ----------DYLKAGL-------LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIE 131

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  774 AYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSD 853
Cdd:COG2956    132 VLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  854 VDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYkQRATASFDQKDYTNAIADLNKAAE 916
Cdd:COG2956    212 LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 410-679 1.07e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.55  E-value: 1.07e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  410 AIALDAAYLKAYENRGFLRYDQKDYA-GAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLA 488
Cdd:COG2956      2 LLPVAAALGWYFKGLNYLLNGQPDKAiDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  489 KGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYT 568
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  569 EAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGL 648
Cdd:COG2956    162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALEL 241

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1223470867  649 DANySEAYESRGYLRYDQKDYAGAITDLDKL 679
Cdd:COG2956    242 DPS-DDLLLALADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1447-1691 1.13e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 84.67  E-value: 1.13e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1447 ITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYY 1526
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1527 VRGNARYELKDYKGATEDLVKVTPADNiNEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKD 1606
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDP-DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1607 YEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAI 1686
Cdd:COG0457    160 YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239


                   ....*
gi 1223470867 1687 DLGNN 1691
Cdd:COG0457    240 LYQYR 244
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1926-2177 1.34e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.17  E-value: 1.34e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1926 LALDVPAAYGH--RGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYT 2003
Cdd:COG2956      1 LLLPVAAALGWyfKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2004 FRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSY 2083
Cdd:COG2956     81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2084 AEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAE 2163
Cdd:COG2956    161 DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240

                          250
                   ....*....|....
gi 1223470867 2164 IEPNNANIYYYRAL 2177
Cdd:COG2956    241 LDPSDDLLLALADL 254
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 734-962 1.70e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.90  E-value: 1.70e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  734 YAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAI 813
Cdd:COG3914     26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRAL 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  814 ELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQ 893
Cdd:COG3914    106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  894 RATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAER--DLSQAIARGEKSTEVYAHL 962
Cdd:COG3914    186 LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRfeELLAALARGPSELSPFALL 256
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1254-1492 1.83e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.78  E-value: 1.83e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1254 FAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKD 1333
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1334 YKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAV 1413
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1414 TLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYA 1492
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1902-2060 1.84e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.43  E-value: 1.84e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1902 RKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLvLFGRGKAKYLLGNN 1981
Cdd:COG4785     11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQL-YYERGVAYDSLGDY 89

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1982 AGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAI 2060
Cdd:COG4785     90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 499-678 2.29e-17

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.51  E-value: 2.29e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  499 YAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAI 578
Cdd:COG3914     26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRAL 105

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  579 ELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYES 658
Cdd:COG3914    106 ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNN 185

                          170       180
                   ....*....|....*....|
gi 1223470867  659 RGYLRYDQKDYAGAITDLDK 678
Cdd:COG3914    186 LGNALQDLGRLEEAIAAYRR 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
646-877 2.55e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.90  E-value: 2.55e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  646 IGLDANYSEAYESRGYLRYDQKDYAGAITDLDK---LTDKNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYL 722
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKaleLDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  723 AKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNY 802
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  803 ADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPEL 877
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1152-1413 2.62e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 2.62e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1152 YNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQA 1231
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1232 YAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAA 1311
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1312 KTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYAs 1391
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA- 250

                          250       260
                   ....*....|....*....|..
gi 1223470867 1392 LGNAQAEKEDFAAALPNLNQAV 1413
Cdd:COG2956    251 LADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 758-980 3.70e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.01  E-value: 3.70e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  758 LADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYK 837
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  838 GAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  918 GDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFD 980
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1727-1916 4.02e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 83.13  E-value: 4.02e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1727 AILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHL 1806
Cdd:COG0457      8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1807 ELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADL 1886
Cdd:COG0457     88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167

                          170       180       190
                   ....*....|....*....|....*....|
gi 1223470867 1887 TKATTLSPEDAQLFDRKGLILQMISRHKDA 1916
Cdd:COG0457    168 EKLEAAALAALLAAALGEAALALAAAEVLL 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 860-1141 6.63e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 83.24  E-value: 6.63e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  860 LALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHD 939
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  940 EAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDlavpkpvaapaaakvpakgakpAASAAADVPAQVYEQRG 1019
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE----------------------RLLKLGPENAHAYCELA 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1020 QAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAA 1099
Cdd:COG2956    152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1100 LPDLDKAISLGATDPKLFYhRGNELVAQKQYAKAIEDLNKAV 1141
Cdd:COG2956    232 LELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQL 272
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1117-1378 7.84e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.85  E-value: 7.84e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1117 FYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELE 1196
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1197 EYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKV 1276
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1277 TEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFE 1356
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250

                          250       260
                   ....*....|....*....|..
gi 1223470867 1357 hLGLAQYEEKDYTAAIENLKAA 1378
Cdd:COG2956    251 -LADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 218-475 8.38e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.85  E-value: 8.38e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  218 FLSAAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQ 297
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  298 YKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAV 377
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  378 SLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKKLYVTRGL 457
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251

                          250       260
                   ....*....|....*....|
gi 1223470867  458 AKY--QTKDYNGAIADLGEA 475
Cdd:COG2956    252 ADLleRKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1389-1547 1.30e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.59  E-value: 1.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1389 YASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTT 1468
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1469 DNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVK 1547
Cdd:COG0457     91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1017-1244 1.30e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.47  E-value: 1.30e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1017 QRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQF 1096
Cdd:COG2956     13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1097 TAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKK 1176
Cdd:COG2956     93 DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1177 MGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQ 1244
Cdd:COG2956    173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1637-1809 1.59e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 80.73  E-value: 1.59e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1637 VKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTD---AIYFHRGNAKFRTNDLTGAV 1713
Cdd:COG4785     14 LAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaQLYYERGVAYDSLGDYDLAI 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1714 ADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPN 1793
Cdd:COG4785     94 ADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173

                          170
                   ....*....|....*.
gi 1223470867 1794 DEDLNVLAGRSHLELK 1809
Cdd:COG4785    174 DPERALWLYLAERKLD 189
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1012-1242 2.26e-16

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 81.70  E-value: 2.26e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGqakfftkDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG2956     49 GNLYRRRG-------EYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE 121

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDL 1171
Cdd:COG2956    122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAAL 201

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1172 ELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEfETQAYAAAIQTLTKA 1242
Cdd:COG2956    202 ERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE-RKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1357-1547 2.87e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.82  E-value: 2.87e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1357 HLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDY 1436
Cdd:COG0457     13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRY 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1437 KNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAID 1516
Cdd:COG0457     93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1223470867 1517 LGAQDPLAYYVRGNARYELKDYKGATEDLVK 1547
Cdd:COG0457    173 AALAALLAAALGEAALALAAAEVLLALLLAL 203
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
311-510 7.08e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.80  E-value: 7.08e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  311 LNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVsEALIYNNR 390
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPD-LAQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  391 GKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDYNG 467
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRaleLDPDYAYAYLNRGIALYYLGRYEL 159

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|...
gi 1223470867  468 AIADLGEAEKAGATDKEVYLAKGLSLFELkNYAEAETELAKAI 510
Cdd:COG4785    160 AIADLEKALELDPNDPERALWLYLAERKL-DPEKALALLLEDW 201
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 400-625 8.42e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 83.50  E-value: 8.42e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  400 AQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDkltdknkkLYVTRGLAKYQTKDYNGAIADLGEAEKAG 479
Cdd:COG3914      3 AAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLAL--------LLLAALAEAAAAALLALAAGEAAAAAAAL 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  480 ATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGK 559
Cdd:COG3914     75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867  560 SRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNR 625
Cdd:COG3914    155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 557-926 1.02e-15

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 83.11  E-value: 1.02e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  557 RGKSRYEQKNYTEAIADYSKAIELgtSNKEVYY-DRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNP 635
Cdd:TIGR00990  133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  636 QGALEDYTkAIGLDANYSEAYESRGYLRYDQKDyagAITDL-DKLTDKNKKL-YATRGLSKFQTKDYAGAIADLGEAEKA 713
Cdd:TIGR00990  211 ADALLDLT-ASCIIDGFRNEQSAQAVERLLKKF---AESKAkEILETKPENLpSVTFVGNYLQSFRPKPRPAGLEDSNEL 286

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  714 GATDKEVYLAKGLSLFELK---NYAEAETELAKAI---EAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAH 787
Cdd:TIGR00990  287 DEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  788 VFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCEL 867
Cdd:TIGR00990  367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867  868 KQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSL 926
Cdd:TIGR00990  447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM 505
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1563-1824 1.08e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 1.08e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1563 LGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFA 1642
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1643 GAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQM 1722
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1723 GYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAg 1802
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALA- 252

                          250       260
                   ....*....|....*....|..
gi 1223470867 1803 RSHLELKEYRESVPYLTKVVDK 1824
Cdd:COG2956    253 DLLERKEGLEAALALLERQLRR 274
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 283-445 1.16e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 83.12  E-value: 1.16e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  283 NLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFR 362
Cdd:COG3914     79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  363 KEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLD 442
Cdd:COG3914    159 LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEE 238


                   ...
gi 1223470867  443 KLT 445
Cdd:COG3914    239 LLA 241
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2074-2251 1.48e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.03  E-value: 1.48e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2074 ALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLS---PKSIRGYLQRGQARIGLED 2150
Cdd:COG4785      9 LLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAYDSLGD 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2151 HEGAITDYNKAAEIEPNNANIYYYRALAKASLKDttdagVKSSFADFDKAIQLNPNFAEAYTSRANMKLQLDEPDLvgAC 2230
Cdd:COG4785     89 YDLAIADFDQALELDPDLAEAYNNRGLAYLLLGD-----YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL--AI 161

                          170       180
                   ....*....|....*....|.
gi 1223470867 2231 QDWDKAVKLGNNSAREMLRQY 2251
Cdd:COG4785    162 ADLEKALELDPNDPERALWLY 182
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1800-2097 2.53e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 78.62  E-value: 2.53e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1800 LAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGlntgpvfANRGEARFALkdt 1879
Cdd:COG2956     13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD-------PDRAEALLEL--- 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1880 tgsladltkattlspedAQLFDRKGLilqmisrHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATG 1959
Cdd:COG2956     83 -----------------AQDYLKAGL-------LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1960 LGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGL 2039
Cdd:COG2956    139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 2040 ANAYLVQEDYEKAISNFDlAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKD 2097
Cdd:COG2956    219 AELYEKLGDPEEALELLR-KALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1049-1288 4.55e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.85  E-value: 4.55e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1049 FYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQK 1128
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1129 QYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQA 1208
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1209 QKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYA 1288
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
957-1215 4.96e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.97  E-value: 4.96e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  957 EVYAHLGYSRYALKNYTGAIAAFDLAVPKPVAApaaakvpakgakpaasaaadvpAQVYEQRGQAKFFTKDYAGAIADLT 1036
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD----------------------AEALYNLGLAYLRLGRYEEALADYE 66

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1037 KAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKL 1116
Cdd:COG0457     67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1117 FYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELE 1196
Cdd:COG0457    147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226

                          250
                   ....*....|....*....
gi 1223470867 1197 EYEQALSALKQAQKLGATD 1215
Cdd:COG0457    227 LALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1107-1311 5.56e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.97  E-value: 5.56e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1107 ISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYA 1186
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1187 MLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDY 1266
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1223470867 1267 KGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAA 1311
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1278-1494 7.87e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.87e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1278 EADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEH 1357
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1358 LGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYK 1437
Cdd:COG0457     82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867 1438 NSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANR 1494
Cdd:COG0457    162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 455-680 8.37e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 80.42  E-value: 8.37e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  455 RGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAET---------ELAKAIEAGEKSQNVFEHLAD 525
Cdd:COG3914      7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaallalaagEAAAAAAALLLLAALLELAAL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  526 ARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAI 605
Cdd:COG3914     87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAI 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  606 ADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLT 680
Cdd:COG3914    167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLA 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1147-1380 1.15e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 1.15e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1147 DVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISE 1226
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1227 FETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIED 1306
Cdd:COG0457     87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALEL 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1307 LSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKE 1380
Cdd:COG0457    167 LEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1597-1857 2.44e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.54  E-value: 2.44e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1597 RGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYA 1676
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1677 SSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKL 1756
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1757 DPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDEnVYFYRG 1836
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALA 252

                          250       260
                   ....*....|....*....|.
gi 1223470867 1837 TAYLNMKEYQVSAKDLNKAIE 1857
Cdd:COG2956    253 DLLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 523-652 2.46e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 72.15  E-value: 2.46e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  523 LADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYA 602
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867  603 GAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANY 652
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1220-1459 3.29e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 3.29e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1220 YKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKD 1299
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1300 YKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAK 1379
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1380 EKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNL 1459
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
251-443 3.33e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 74.18  E-value: 3.33e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  251 YYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENK 330
Cdd:COG4785      8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  331 EYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQA 410
Cdd:COG4785     88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167

                          170       180       190
                   ....*....|....*....|....*....|...
gi 1223470867  411 IALDAAYLKAYENRgFLRYDQKDYAGAIADLDK 443
Cdd:COG4785    168 LELDPNDPERALWL-YLAERKLDPEKALALLLE 199
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1321-1585 3.85e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 75.15  E-value: 3.85e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1321 FFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKE 1400
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1401 DFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKA 1480
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1481 LSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKIsf 1560
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL-- 248

                          250       260
                   ....*....|....*....|....*
gi 1223470867 1561 SNLGNAYFELKDYTAANTALSKAVE 1585
Cdd:COG2956    249 LALADLLERKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1012-1200 4.33e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 4.33e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG3914     78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDL 1171
Cdd:COG3914    158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1223470867 1172 ELAKKMGKNSKA------LYAMLGDAAFELEEYEQ 1200
Cdd:COG3914    238 ELLAALARGPSElspfalLYLPDDDPAELLALARA 272
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 338-767 4.79e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 77.72  E-value: 4.79e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  338 DYTKAEQLGVADKKLYV----QRANSRFRKEDYAGAIADYDKAVSLGvSEALIYNNRGKAKQLTSNAQGALEDYTQAIAL 413
Cdd:TIGR00990  111 DESSVANLSEEERKKYAaklkEKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALEL 189

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  414 DAAYLKAYeNRGFLRYDQ-KDYAGAIADL------DKLTDKNKKLYVTRGLAKyQTKDYNGAIADLGEAEKAGATDKEVY 486
Cdd:TIGR00990  190 DPDYSKAL-NRRANAYDGlGKYADALLDLtasciiDGFRNEQSAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNY 267

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  487 LAKGLSLFELKNY---AEAETELAKA-IEAGEKSqnvFEHLADARFEQnkyksAEAAYTQAIGAG---LQTAHVFERRGK 559
Cdd:TIGR00990  268 LQSFRPKPRPAGLedsNELDEETGNGqLQLGLKS---PESKADESYEE-----AARAFEKALDLGklgEKEAIALNLRGT 339

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  560 SRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGAL 639
Cdd:TIGR00990  340 FKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  640 EDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDK------------------LTDKNKklyATRGLSKFQTkdya 701
Cdd:TIGR00990  420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRckknfpeapdvynyygelLLDQNK---FDEAIEKFDT---- 492

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  702 gAIAdLGEAEKAGATDKEVYLAKGLSLFELK-NYAEAETELAKAIEAGEKSQKVFEHLADARFEQNK 767
Cdd:TIGR00990  493 -AIE-LEKETKPMYMNVLPLINKALALFQWKqDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1942-2096 5.55e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 77.73  E-value: 5.55e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1942 LALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVAD 2021
Cdd:COG3914     89 QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAA 168

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 2022 FNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIvNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKK 2096
Cdd:COG3914    169 LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL-ELDPDNADAHSNLLFALRQACDWEVYDRFEELLAA 242
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 549-683 8.00e-14

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 8.00e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  549 QTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKA 628
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  629 KQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKN 683
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
455-646 1.23e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 72.26  E-value: 1.23e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  455 RGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEhLADARFEQNKYK 534
Cdd:COG4785     12 LALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYE-RGVAYDSLGDYD 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  535 SAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSL 614
Cdd:COG4785     91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  615 GVSEALVFYNR--------------------GKAKQQTGNPQGALEDYTKAI 646
Cdd:COG4785    171 DPNDPERALWLylaerkldpekalallledwATAYLLQGDTEEARELFKLAL 222
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1993-2251 1.45e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.19  E-value: 1.45e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1993 AADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFT--DKKTY 2070
Cdd:COG3914      2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALllLAALL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2071 FGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLED 2150
Cdd:COG3914     82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2151 HEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSRANMKLQLDEPDLVGAC 2230
Cdd:COG3914    162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA-----IAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                          250       260
                   ....*....|....*....|.
gi 1223470867 2231 QDWDKAVKLGNNSAREMLRQY 2251
Cdd:COG3914    237 EELLAALARGPSELSPFALLY 257
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1981-2223 1.59e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 76.19  E-value: 1.59e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1981 NAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAI 2060
Cdd:COG3914     60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2061 VNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKkdskdtaayyyrasayieldkfddaiadlsdyikLSPKSIRGYLQ 2140
Cdd:COG3914    140 ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE----------------------------------LDPDNAEALNN 185

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2141 RGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkSSFADFDKAIQLNP----NFAEAYTSRAN 2216
Cdd:COG3914    186 LGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY---DRFEELLAALARGPselsPFALLYLPDDD 262


                   ....*..
gi 1223470867 2217 MKLQLDE 2223
Cdd:COG3914    263 PAELLAL 269
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1290-1547 1.98e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.84  E-value: 1.98e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1290 RGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYT 1369
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1370 AAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITL 1449
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1450 GVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVrG 1529
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-A 252

                          250
                   ....*....|....*...
gi 1223470867 1530 NARYELKDYKGATEDLVK 1547
Cdd:COG2956    253 DLLERKEGLEAALALLER 270
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1967-2100 2.34e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.07  E-value: 2.34e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1967 VLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQ 2046
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 2047 EDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKD 2100
Cdd:COG4783     86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 573-981 2.44e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 75.41  E-value: 2.44e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  573 DYSKAIELGTSNKEVYY----DRGMARYSLKDYAGAIADYDKAVSLgvSEALVFY-NRGKAKQQTGNPQGALEDYTKAIG 647
Cdd:TIGR00990  111 DESSVANLSEEERKKYAaklkEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYsNRAACHNALGDWEKVVEDTTAALE 188

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  648 LDANYSEAYESRGYLRYDQKDYAGAITDLDKLTdknkklyatrglskfqtkdyagAIADLGEAEKAGATDKEvylakgls 727
Cdd:TIGR00990  189 LDPDYSKALNRRANAYDGLGKYADALLDLTASC----------------------IIDGFRNEQSAQAVERL-------- 238

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  728 lfeLKNYAEAetelaKAIEAGEKSQkvfEHLADARFEQN-----KYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQK-- 800
Cdd:TIGR00990  239 ---LKKFAES-----KAKEILETKP---ENLPSVTFVGNylqsfRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKad 307

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  801 -NYADANADLSKAI---ELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPE 876
Cdd:TIGR00990  308 eSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  877 LTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKST 956
Cdd:TIGR00990  388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467

                          410       420
                   ....*....|....*....|....*
gi 1223470867  957 EVYAHLGYSRYALKNYTGAIAAFDL 981
Cdd:TIGR00990  468 DVYNYYGELLLDQNKFDEAIEKFDT 492
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1012-1141 2.76e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 69.07  E-value: 2.76e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAV 1141
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1984-2100 2.92e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 68.49  E-value: 2.92e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1984 AVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNK 2063
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1223470867 2064 FTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKD 2100
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 251-443 3.02e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 3.02e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  251 YYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQE--QYKEAEKDFDKAVELNIADKDIYFYRGNVRYE 328
Cdd:COG3914     11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaaLLALAAGEAAAAAAALLLLAALLELAALLLQA 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  329 NKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYT 408
Cdd:COG3914     91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1223470867  409 QAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDK 443
Cdd:COG3914    171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRR 205
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
758-977 3.86e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 71.10  E-value: 3.86e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  758 LADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIE------LGANEADVYYDRGMARY 831
Cdd:COG4785      5 ALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYD 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  832 ALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADL 911
Cdd:COG4785     85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADL 164

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867  912 NKAAELGDSSRSVSLMRGLSYYHLNkHDEAERDLSQAIARgeksteVYAHLGYSRYALKNYTGAIA 977
Cdd:COG4785    165 EKALELDPNDPERALWLYLAERKLD-PEKALALLLEDWAT------AYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 249-379 4.14e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.68  E-value: 4.14e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  249 STYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYE 328
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  329 NKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSL 379
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1831-2060 4.98e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 70.71  E-value: 4.98e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1831 VYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLsPEDAQLFDRKGLILQMI 1910
Cdd:COG4785      8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSL 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1911 SRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQ 1990
Cdd:COG4785     87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1991 AIAADSAYVQAYTFRGMAKTNLKqYRDAVADFNKAlsfnpkngeaysgLANAYLVQEDYEKAISNFDLAI 2060
Cdd:COG4785    167 ALELDPNDPERALWLYLAERKLD-PEKALALLLED-------------WATAYLLQGDTEEARELFKLAL 222
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
221-417 5.16e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 71.19  E-value: 5.16e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  221 AAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKE 300
Cdd:COG0457     49 GLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  301 AEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLG 380
Cdd:COG0457    129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1223470867  381 VSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAY 417
Cdd:COG0457    209 KKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1077-1211 5.37e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 68.29  E-value: 5.37e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1077 SSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGL 1156
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 1157 ALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKL 1211
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 696-879 5.68e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 5.68e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  696 QTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAY 775
Cdd:COG3914     56 AAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAAL 135

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  776 TQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVD 855
Cdd:COG3914    136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215

                          170       180
                   ....*....|....*....|....*..
gi 1223470867  856 LHTKLALSY---CELKQYAAALPELTK 879
Cdd:COG3914    216 AHSNLLFALrqaCDWEVYDRFEELLAA 242
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1523-1789 7.01e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.30  E-value: 7.01e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1523 LAYYVRGNARYELKDYKGATEDLVKVTPADNINEKISFsNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRY 1602
Cdd:COG2956      9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1603 MLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDL 1682
Cdd:COG2956     88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1683 NKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIK 1762
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247

                          250       260
                   ....*....|....*....|....*..
gi 1223470867 1763 AFsNRALSRFKTADYRGALTDLTTALQ 1789
Cdd:COG2956    248 LL-ALADLLERKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 784-917 9.06e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.52  E-value: 9.06e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  784 QTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALS 863
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867  864 YCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1594-1807 9.40e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.87  E-value: 9.40e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1594 LGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETK 1673
Cdd:COG3914     13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1674 NYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEA 1753
Cdd:COG3914     93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1754 LKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDL--NVLAGRSHLE 1807
Cdd:COG3914    173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhsNLLFALRQAC 228
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1665-1918 9.87e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.91  E-value: 9.87e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1665 RGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFP 1744
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1745 ASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDK 1824
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1825 GTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFdRKG 1904
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL-ALA 252

                          250
                   ....*....|....
gi 1223470867 1905 LILQMISRHKDAIE 1918
Cdd:COG2956    253 DLLERKEGLEAALA 266
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2119-2250 1.23e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 66.95  E-value: 1.23e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2119 DAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFD 2198
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEA-----EELLE 75

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 2199 KAIQLNPNFAEAYTSRANMKLQLDEPDlvGACQDWDKAVKLG-NNSAREMLRQ 2250
Cdd:COG4235     76 RALALDPDNPEALYLLGLAAFQQGDYA--EAIAAWQKLLALLpADAPARLLEA 126
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1185-1412 1.42e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.65  E-value: 1.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1185 YAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTK 1264
Cdd:COG0457     11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1265 DYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKA 1344
Cdd:COG0457     91 RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1345 KELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQA 1412
Cdd:COG0457    171 EAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1563-1757 1.54e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.10  E-value: 1.54e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1563 LGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFA 1642
Cdd:COG3914     84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1643 GAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQM 1722
Cdd:COG3914    164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAAL 243

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 1223470867 1723 gyqsailfnnRGKAKQLQNLFPASIADFDEALKLD 1757
Cdd:COG3914    244 ----------ARGPSELSPFALLYLPDDDPAELLA 268
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1597-1722 3.47e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.98  E-value: 3.47e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1597 RGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYA 1676
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1223470867 1677 SSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQM 1722
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 285-417 3.94e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 65.60  E-value: 3.94e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  285 YLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKE 364
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  365 DYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAY 417
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1421-1653 4.72e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.99  E-value: 4.72e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1421 LVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWV 1500
Cdd:COG2956      9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1501 QKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKISFsNLGNAYFELKDYTAANTAL 1580
Cdd:COG2956     89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC-ELAELYLEQGDYDEAIEAL 167

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1581 SKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEA 1653
Cdd:COG2956    168 EKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1356-1497 5.41e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.18  E-value: 5.41e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1356 EHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKD 1435
Cdd:COG3914     82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1436 YKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFI 1497
Cdd:COG3914    162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1343-1497 5.85e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.63  E-value: 5.85e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1343 KAKELGRTDRDLFEHLGLAQYEEKDYTAA---IENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKD 1419
Cdd:COG4785     27 AALLFAAVLALAIALADLALALAAAALAAaalAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1420 KLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFI 1497
Cdd:COG4785    107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLA 184
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1657-1857 6.68e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.25  E-value: 6.68e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1657 KVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQmGYQSAILFNNRGKA 1736
Cdd:COG4785      4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALA-LPDLAQLYYERGVA 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1737 KQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDlnvlagrshlelkeyresvp 1816
Cdd:COG4785     83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY-------------------- 142

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 1223470867 1817 yltkvvdkgtkdenVYFYRGTAYLNMKEYQVSAKDLNKAIE 1857
Cdd:COG4785    143 --------------AYLNRGIALYYLGRYELAIADLEKALE 169
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1569-1790 8.29e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.25  E-value: 8.29e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1569 ELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVI---AQEPKNARALHLRGQSKFVKNDFAGAV 1645
Cdd:COG4785     14 LAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdraLALPDLAQLYYERGVAYDSLGDYDLAI 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1646 ADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDltgavadydkaqqmgyq 1725
Cdd:COG4785     94 ADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGR----------------- 156

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 1726 sailfnnrgkakqlqnlFPASIADFDEALKLDPKYIKAFSNRALSRFKtADYRGALTDLTTALQY 1790
Cdd:COG4785    157 -----------------YELAIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLEDWAT 203
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1012-1211 9.04e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.41  E-value: 9.04e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQK--DFKGAVADLEKAKSMGSSDLDLHTRLAVS 1089
Cdd:COG3914      8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaaLLALAAGEAAAAAAALLLLAALLELAALL 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1090 YCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVT 1169
Cdd:COG3914     88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1170 DLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKL 1211
Cdd:COG3914    168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 455-580 9.86e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 9.86e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  455 RGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYK 534
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1223470867  535 SAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIEL 580
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 817-951 1.40e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.06  E-value: 1.40e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  817 ANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRAT 896
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  897 ASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIAR 951
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1562-1653 1.50e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.87  E-value: 1.50e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1562 NLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDF 1641
Cdd:COG4235     22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101

                           90
                   ....*....|..
gi 1223470867 1642 AGAVADLTEAEA 1653
Cdd:COG4235    102 AEAIAAWQKLLA 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 217-390 1.80e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 1.80e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  217 AFLSAAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQE 296
Cdd:COG3914     47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  297 QYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKA 376
Cdd:COG3914    127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206

                          170
                   ....*....|....
gi 1223470867  377 VSLGVSEALIYNNR 390
Cdd:COG3914    207 LELDPDNADAHSNL 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 232-349 1.91e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.49  E-value: 1.91e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  232 KVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVEL 311
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1223470867  312 NIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVAD 349
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 221-345 1.94e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 1.94e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  221 AAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKE 300
Cdd:COG4783     11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1223470867  301 AEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQL 345
Cdd:COG4783     91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 654-779 2.07e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.07e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  654 EAYESRGYLRYDQKDYAGAITDLDKLTDK---NKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFE 730
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELdpdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867  731 LKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1996-2134 2.09e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.09e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1996 SAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSAL 2075
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 2076 ALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKS 2134
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 415-544 2.18e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.18e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  415 AAYLKAYENRGFLRYDQKDYAGAIADLDKLTDK---NKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGL 491
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELdpdNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  492 SLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAI 544
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 619-747 2.26e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 2.26e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  619 ALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKK---LYATRGLSKF 695
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDepeARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  696 QTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 747
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1835-2239 2.47e-11

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.86  E-value: 2.47e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1835 RGTAYLNMKEYQVSAKDLNKAIEmgLNTGPVF-ANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRH 1913
Cdd:TIGR00990  133 KGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYySNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1914 KDAIEDFS----------KSVSLALD---------------------------------------VPAAYGH-------- 1936
Cdd:TIGR00990  211 ADALLDLTasciidgfrnEQSAQAVErllkkfaeskakeiletkpenlpsvtfvgnylqsfrpkpRPAGLEDsneldeet 290

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1937 -RGTSKLALKE--------YEPAIVDFDKA---TGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTF 2004
Cdd:TIGR00990  291 gNGQLQLGLKSpeskadesYEEAARAFEKAldlGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIK 370

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2005 RGMAKTNLKQYRDAVADFNKALSFNPKNGEAYsglanaylvqedYEKAISNFdlaivnkftdkktyfgsalalyRLQSYA 2084
Cdd:TIGR00990  371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIY------------YHRAQLHF----------------------IKGEFA 416

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2085 EAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEI 2164
Cdd:TIGR00990  417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867 2165 EPNNANIYYYRA--LAKASLKDTTDAGVKSSFADFDKAIQLNPNFAEAYTSRANMKLQldEPDLVGACQDWDKAVKL 2239
Cdd:TIGR00990  497 EKETKPMYMNVLplINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQ--QGDVDEALKLFERAAEL 571
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2034-2168 2.64e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.29  E-value: 2.64e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2034 EAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIE 2113
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 2114 LDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNN 2168
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 756-853 3.36e-11

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.50  E-value: 3.36e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  756 EHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKD 835
Cdd:PLN03088     6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85

                           90
                   ....*....|....*...
gi 1223470867  836 YKGAAADFEKAKGLGSSD 853
Cdd:PLN03088    86 YQTAKAALEKGASLAPGD 103
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1894-2052 3.42e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.48  E-value: 3.42e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1894 PEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGK 1973
Cdd:COG3914     75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1974 AKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKA 2052
Cdd:COG3914    155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1452-1653 3.60e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 65.32  E-value: 3.60e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1452 NTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLgAQDPLAYYVRGNA 1531
Cdd:COG4785      4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVA 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1532 RYELKDYKGATEDLVKVTPADNINEKIsFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAI 1611
Cdd:COG4785     83 YDSLGDYDLAIADFDQALELDPDLAEA-YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1612 TDFNKVIAQEPKNARALHLRGQSKFvKNDFAGAVADLTEAEA 1653
Cdd:COG4785    162 ADLEKALELDPNDPERALWLYLAER-KLDPEKALALLLEDWA 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1937-2060 3.81e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.90  E-value: 3.81e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1937 RGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYR 2016
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1223470867 2017 DAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAI 2060
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1832-1993 3.92e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.94  E-value: 3.92e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1832 YFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMIS 1911
Cdd:COG4785     76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1912 RHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKeYEPAIVDFDKAtglgskeklvlfgRGKAKYLLGNNAGAVADFDQA 1991
Cdd:COG4785    156 RYELAIADLEKALELDPNDPERALWLYLAERKLD-PEKALALLLED-------------WATAYLLQGDTEEARELFKLA 221


                   ..
gi 1223470867 1992 IA 1993
Cdd:COG4785    222 LA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2070-2207 4.90e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.52  E-value: 4.90e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2070 YFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLE 2149
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 2150 DHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNF 2207
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA-----IAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1739-1957 6.15e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 6.15e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1739 LQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYL 1818
Cdd:COG2956     20 LNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1819 TKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQ 1898
Cdd:COG2956    100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1899 LFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKA 1957
Cdd:COG2956    180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2113-2239 6.81e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 6.81e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2113 ELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvks 2192
Cdd:COG4783     16 LAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA---- 91

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1223470867 2193 sFADFDKAIQLNPNFAEAYTSRANMKLQLDEPDlvGACQDWDKAVKL 2239
Cdd:COG4783     92 -LALLEKALKLDPEHPEAYLRLARAYRALGRPD--EAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1987-2211 7.86e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 7.86e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1987 DFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAivnkftd 2066
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLA------- 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2067 kKTYFGSALALYRLQSYAEAVKDFDEVlkkdskdtaayyyrasayieldkfddaiadlsdyIKLSPKSIRGYLQRGQARI 2146
Cdd:COG4785     74 -QLYYERGVAYDSLGDYDLAIADFDQA----------------------------------LELDPDLAEAYNNRGLAYL 118

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 2147 GLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAGvkssfADFDKAIQLNPNFAEAY 2211
Cdd:COG4785    119 LLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI-----ADLEKALELDPNDPERA 178
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1725-1858 8.42e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.75  E-value: 8.42e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1725 QSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRS 1804
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1805 HLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEM 1858
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1015-1203 8.80e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 8.80e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1015 YEQRGQAKFFTKDYAGAIADLTKAIGKGVsNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELK 1094
Cdd:COG4785     43 DLALALAAAALAAAALAAERIDRALALPD-LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG 121

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1095 QFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEqQDYKNAVTDLELA 1174
Cdd:COG4785    122 DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLED 200

                          170       180
                   ....*....|....*....|....*....
gi 1223470867 1175 KKMgknskaLYAMLGDAAFELEEYEQALS 1203
Cdd:COG4785    201 WAT------AYLLQGDTEEARELFKLALA 223
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 310-554 9.13e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 67.33  E-value: 9.13e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  310 ELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNN 389
Cdd:COG3914      2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  390 RGKAKQL--TSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKKL---YVTRGLAKYQTKD 464
Cdd:COG3914     82 ELAALLLqaLGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFaeaYLNLGEALRRLGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  465 YNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEA--AYTQ 542
Cdd:COG3914    162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRfeELLA 241

                          250
                   ....*....|..
gi 1223470867  543 AIGAGLQTAHVF 554
Cdd:COG3914    242 ALARGPSELSPF 253
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 521-619 1.10e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 65.58  E-value: 1.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  521 EHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKD 600
Cdd:PLN03088     6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85

                           90
                   ....*....|....*....
gi 1223470867  601 YAGAIADYDKAVSLGVSEA 619
Cdd:PLN03088    86 YQTAKAALEKGASLAPGDS 104
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 851-979 1.17e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.17e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  851 SSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGL 930
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867  931 SYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAF 979
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1895-2032 1.20e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1895 EDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKA 1974
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1975 KYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKN 2032
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1047-1177 1.22e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.22e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1047 EAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVA 1126
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1127 QKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKM 1177
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1184-1406 1.39e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 1.39e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1184 LYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGiSEFETQAYAAAIQTLTKAQQAGVSEQ-------RLLFAK 1256
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIA-LADLALALAAAALAAAALAAERIDRAlalpdlaQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1257 GSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKA 1336
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1337 TITNLEKAKELGRTDRDLFEHLGLAQYeEKDYTAAIENLKAAKEKGsqsvrmYASLGNAQAEKEDFAAAL 1406
Cdd:COG4785    160 AIADLEKALELDPNDPERALWLYLAER-KLDPEKALALLLEDWATA------YLLQGDTEEARELFKLAL 222
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1301-1759 1.51e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.55  E-value: 1.51e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1301 KGAIEDLSIAAKTKDKNGEVFFFLGNShfQQKDYKATITNLEKAKElgRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKE 1380
Cdd:TIGR00990   34 KTAVYTIAGVTVVATGAGVVYYQRKGQ--QQRESKPKISKKERRKR--KQAEKETEGKTEEKKSTAPKNAPVEPADELPE 109

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1381 KGSQSVrmyasLGNAQAEKEDFAAALpnlnqavtlgsKDKlvflnrGNARYNQKDYKNSITDYSQAITLG------VNTA 1454
Cdd:TIGR00990  110 IDESSV-----ANLSEEERKKYAAKL-----------KEK------GNKAYRNKDFNKAIKLYSKAIECKpdpvyySNRA 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1455 QVYNLRGKARFKTTDNVGALA---DFNKALsldNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQdPLAYYVRGNA 1531
Cdd:TIGR00990  168 ACHNALGDWEKVVEDTTAALEldpDYSKAL---NRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFA 243

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1532 RYELKD-YKGATEDLVKVTPADN----INEKISFSNLGNayfelkdytaaNTALSKAVELGVSDvkvLGNRGESRYMLKD 1606
Cdd:TIGR00990  244 ESKAKEiLETKPENLPSVTFVGNylqsFRPKPRPAGLED-----------SNELDEETGNGQLQ---LGLKSPESKADES 309

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1607 YEAAITDFNKVIAQ---EPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLN 1683
Cdd:TIGR00990  310 YEEAARAFEKALDLgklGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1684 KAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPK 1759
Cdd:TIGR00990  390 KALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 715-849 1.61e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.98  E-value: 1.61e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  715 ATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGK 794
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  795 SRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGL 849
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1012-1140 1.68e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 1.68e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG4785     73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRgNELVAQKQYAKAIEDLNKA 1140
Cdd:COG4785    153 YLGRYELAIADLEKALELDPNDPERALWL-YLAERKLDPEKALALLLED 200
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1696-1934 1.79e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.98  E-value: 1.79e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1696 YFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTA 1775
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1776 DYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKA 1855
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1856 IEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAY 1934
Cdd:COG2956    171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1387-1547 2.82e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.63  E-value: 2.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1387 RMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGV---NTAQVYNLRGKA 1463
Cdd:COG4785      3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALalpDLAQLYYERGVA 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1464 RFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATE 1543
Cdd:COG4785     83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162


                   ....
gi 1223470867 1544 DLVK 1547
Cdd:COG4785    163 DLEK 166
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 384-512 3.32e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.21  E-value: 3.32e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  384 ALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKK---LYVTRGLAKY 460
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDepeARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  461 QTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEA 512
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 250-414 3.41e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 65.39  E-value: 3.41e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  250 TYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYEN 329
Cdd:TIGR00990  333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  330 KEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQ 409
Cdd:TIGR00990  413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492


                   ....*
gi 1223470867  410 AIALD 414
Cdd:TIGR00990  493 AIELE 497
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 687-815 4.22e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.82  E-value: 4.22e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  687 YATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQN 766
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867  767 KYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIEL 815
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1065-1187 5.82e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.25  E-value: 5.82e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1065 AVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGG 1144
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1223470867 1145 ISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAM 1187
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2017-2134 6.79e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.86  E-value: 6.79e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2017 DAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKK 2096
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1223470867 2097 DSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKS 2134
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2085-2218 1.08e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 1.08e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2085 EAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEI 2164
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 2165 EPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSRANMK 2218
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEA-----IAAWQKLLALLPADAPARLLEASIA 129
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 536-662 1.20e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 1.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  536 AEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLG 615
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1223470867  616 VSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYL 662
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 569-679 1.36e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 1.36e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  569 EAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGL 648
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1223470867  649 DANYSEAYESRGYLRYDQKDYAGAITDLDKL 679
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
560-746 1.43e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 60.31  E-value: 1.43e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  560 SRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVS---EALVFYNRGKAKQQTGNPQ 636
Cdd:COG4785     11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdLAQLYYERGVAYDSLGDYD 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  637 GALEDYTKAIGLDANYSEAYESRGYLRYdqkdyagaitdldkltdknkklyatrglskfQTKDYAGAIADLGEAEKAGAT 716
Cdd:COG4785     91 LAIADFDQALELDPDLAEAYNNRGLAYL-------------------------------LLGDYDAALEDFDRALELDPD 139

                          170       180       190
                   ....*....|....*....|....*....|
gi 1223470867  717 DKEVYLAKGLSLFELKNYAEAETELAKAIE 746
Cdd:COG4785    140 YAYAYLNRGIALYYLGRYELAIADLEKALE 169
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 266-379 1.49e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.09  E-value: 1.49e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  266 AAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQL 345
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1223470867  346 GVADKKLYVQRANSRFRKEDYAGAIADYDKAVSL 379
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1519-1651 1.66e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.28  E-value: 1.66e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1519 AQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKIsFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRG 1598
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1599 ESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEA 1651
Cdd:COG4783     80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1972-2060 1.95e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.71  E-value: 1.95e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1972 GKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEK 2051
Cdd:COG4235     24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103


                   ....*....
gi 1223470867 2052 AISNFDLAI 2060
Cdd:COG4235    104 AIAAWQKLL 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1625-1854 2.47e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 2.47e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1625 ARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKN---------YASSLTDLNKAIDLGNNTDAI 1695
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAAlaeaaaaalLALAAGEAAAAAAALLLLAAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1696 YFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTA 1775
Cdd:COG3914     81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867 1776 DYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNK 1854
Cdd:COG3914    161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEEL 239
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 314-448 2.85e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 2.85e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  314 ADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKA 393
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  394 KQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKN 448
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1358-1484 3.30e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 3.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1358 LGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYK 1437
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1223470867 1438 NSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLD 1484
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1118-1245 3.33e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 3.33e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1118 YHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEE 1197
Cdd:COG4783      8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGD 87

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1223470867 1198 YEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQA 1245
Cdd:COG4783     88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1140-1623 3.36e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 3.36e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1140 AVTGGISDVTVHYNrglaLYEQQDYKNAVTdlELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETt 1219
Cdd:TIGR00990   42 GVTVVATGAGVVYY----QRKGQQQRESKP--KISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESS- 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1220 yKIGISEFETQAYAAAIQTltkaqqagvseqrllfaKGSAKYFTKDYKGALVDLNKVTEAdyKTDE-FYANRGSAKYLTK 1298
Cdd:TIGR00990  115 -VANLSEEERKKYAAKLKE-----------------KGNKAYRNKDFNKAIKLYSKAIEC--KPDPvYYSNRAACHNALG 174

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1299 DYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAA 1378
Cdd:TIGR00990  175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK 254

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1379 KEKGSQSVRMYASLGNAQAEkedfaAALPNLNQAVTLGSKDKLVFLNRGNARYNQK---DYKNSITDYSQAIT---LGVN 1452
Cdd:TIGR00990  255 PENLPSVTFVGNYLQSFRPK-----PRPAGLEDSNELDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALDlgkLGEK 329

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1453 TAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNAR 1532
Cdd:TIGR00990  330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1533 YELKDYKGATEDLVKVTPADNINeKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAIT 1612
Cdd:TIGR00990  410 FIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488

                          490
                   ....*....|.
gi 1223470867 1613 DFNKVIAQEPK 1623
Cdd:TIGR00990  489 KFDTAIELEKE 499
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1563-1688 4.04e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 4.04e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1563 LGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFA 1642
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1223470867 1643 GAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDL 1688
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 335-444 5.13e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 5.13e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  335 AIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALD 414
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|
gi 1223470867  415 AAYLKAYENRGFLRYDQKDYAGAIADLDKL 444
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1720-1937 6.48e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 6.48e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1720 QQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKA--FSNRALSRFKTADYRGALTDLTTALQYSPNDEDL 1797
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLAllLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1798 NVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALK 1877
Cdd:COG3914     81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1878 DTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHR 1937
Cdd:COG3914    161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1978-2060 8.35e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 8.35e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1978 LGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVAdFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFD 2057
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83


                   ...
gi 1223470867 2058 LAI 2060
Cdd:COG3063     84 RAL 86
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1659-1794 8.65e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 8.65e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1659 VELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQ 1738
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1739 LQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPND 1794
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1767-1896 1.00e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 1.00e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1767 RALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQ 1846
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1847 VSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPED 1896
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1528-1651 1.08e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.39  E-value: 1.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1528 RGNARYELKDYKGAtEDLVKVTPADNINEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDY 1607
Cdd:COG3914     84 AALLLQALGRYEEA-LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRL 162

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1223470867 1608 EAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEA 1651
Cdd:COG3914    163 EEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 566-779 1.57e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.01  E-value: 1.57e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  566 NYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAK---------QQTGNPQ 636
Cdd:COG3914     16 ALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAllelaalllQALGRYE 95

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  637 GALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKklyatrglskfqtkDYAgaiadlgeaekagat 716
Cdd:COG3914     96 EALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNP--------------DFA--------------- 146

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  717 dkEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:COG3914    147 --EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1031-1141 1.64e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 1.64e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1031 AIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLG 1110
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1223470867 1111 ATDPKLFYHRGNELVAQKQYAKAIEDLNKAV 1141
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1324-1469 1.68e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.01  E-value: 1.68e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1324 LGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFA 1403
Cdd:COG3914     84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1404 AALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTD 1469
Cdd:COG3914    164 EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
624-779 1.76e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 57.23  E-value: 1.76e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  624 NRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAIT--DLDKLTDKNKKLYATRGLSKFQTKDYA 701
Cdd:COG4785     11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEriDRALALPDLAQLYYERGVAYDSLGDYD 90

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867  702 GAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:COG4785     91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1319-1449 1.85e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1319 EVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAE 1398
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1399 KEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITL 1449
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 807-917 1.87e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 1.87e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  807 ADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGAT 886
Cdd:COG4235      4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD 83

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1223470867  887 EPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG4235     84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 244-369 1.96e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 1.96e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  244 NAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRG 323
Cdd:COG3914    108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1223470867  324 NVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGA 369
Cdd:COG3914    188 NALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1625-1760 2.06e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 2.06e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1625 ARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKF 1704
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1705 RTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKY 1760
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1696-1824 2.08e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 2.08e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1696 YFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTA 1775
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867 1776 DYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDK 1824
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1864-1998 2.50e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 2.50e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1864 PVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLA 1943
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 1944 LKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAY 1998
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 499-649 2.54e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.35  E-value: 2.54e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  499 YAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAI 578
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  579 ELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLD 649
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1338-1497 2.55e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.24  E-value: 2.55e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1338 ITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGS 1417
Cdd:COG3914     30 AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNP 109

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1418 KDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFI 1497
Cdd:COG3914    110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1287-1415 2.80e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 2.80e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1287 YANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEK 1366
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867 1367 DYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTL 1415
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1562-1926 3.04e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 58.84  E-value: 3.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1562 NLGNAYFELKDYTAANTALSKAVELGvSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDF 1641
Cdd:TIGR00990  132 EKGNKAYRNKDFNKAIKLYSKAIECK-PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1642 AGAVADLTEA-------EAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNntdaiYFHRGNAKFRTndltgavA 1714
Cdd:TIGR00990  211 ADALLDLTASciidgfrNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-----YLQSFRPKPRP-------A 278

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1715 DYDKAQQMGYQSAILFNNRGK---AKQLQNLFPASIADFDEAL---KLDPKYIKAFSNRALSRFKTADYRGALTDLTTAL 1788
Cdd:TIGR00990  279 GLEDSNELDEETGNGQLQLGLkspESKADESYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1789 QYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFAN 1868
Cdd:TIGR00990  359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1869 RGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSL 1926
Cdd:TIGR00990  439 LGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1826-1957 3.67e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 3.67e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1826 TKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGL 1905
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1906 ILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKA 1957
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2011-2099 4.42e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.87  E-value: 4.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2011 NLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISnFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDF 2090
Cdd:COG3063      4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82


                   ....*....
gi 1223470867 2091 DEVLKKDSK 2099
Cdd:COG3063     83 ERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 736-855 4.47e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 4.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  736 EAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIEL 815
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1223470867  816 GANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVD 855
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1974-2097 5.10e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 5.10e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1974 AKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAI 2053
Cdd:COG5010     29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1223470867 2054 SNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKD 2097
Cdd:COG5010    109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1830-1957 5.40e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 5.40e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1830 NVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQM 1909
Cdd:COG3914     79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1223470867 1910 ISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKA 1957
Cdd:COG3914    159 LGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1915-2036 5.63e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 5.63e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1915 DAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAA 1994
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1995 DSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAY 2036
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1417-1547 6.42e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 6.42e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1417 SKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGF 1496
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1497 IKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVK 1547
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1098-1217 6.97e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 6.97e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1098 AALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKM 1177
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1223470867 1178 GKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKE 1217
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1012-1109 7.14e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 7.14e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG4783     38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                           90
                   ....*....|....*...
gi 1223470867 1092 ELKQFTAALPDLDKAISL 1109
Cdd:COG4783    118 ALGRPDEAIAALEKALEL 135
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 283-536 7.51e-08

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 57.69  E-value: 7.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  283 NLYLwRGLALYQQEQYKEAEKDFDKAVELN-IADKDIYFY--RGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANS 359
Cdd:TIGR00990  296 QLGL-KSPESKADESYEEAARAFEKALDLGkLGEKEAIALnlRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  360 RFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIA 439
Cdd:TIGR00990  375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  440 DLDK------------------LTDKNKklyVTRGLAKYQTkdyngAIAdLGEAEKAGATDKEVYLAKGLSLFELK-NYA 500
Cdd:TIGR00990  455 TFRRckknfpeapdvynyygelLLDQNK---FDEAIEKFDT-----AIE-LEKETKPMYMNVLPLINKALALFQWKqDFI 525

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1223470867  501 EAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSA 536
Cdd:TIGR00990  526 EAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 734-883 8.98e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.81  E-value: 8.98e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  734 YAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAI 813
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  814 ELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISL 883
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 812-1116 9.47e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 9.47e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  812 AIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGAteprIY 891
Cdd:COG3914      6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA----LL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  892 KQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKN 971
Cdd:COG3914     82 ELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  972 YTGAIAAFDLAVPKPVAApaaakvpakgakpaasaaadvpAQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYN 1051
Cdd:COG3914    162 LEEAIAALRRALELDPDN----------------------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSN 219

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1052 RGMARYEQKDFKGAVADLEKAK---------------SMGSSDLDLHTRLAVSYCELKQFtAALPDLDKAISLGATDPKL 1116
Cdd:COG3914    220 LLFALRQACDWEVYDRFEELLAalargpselspfallYLPDDDPAELLALARAWAQLVAA-AAAPELPPPPNPRDPDRKL 298
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
257-345 9.56e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.71  E-value: 9.56e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  257 AKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKdFDKAVELNIADKDIYFYRGNVRYENKEYAGAI 336
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867  337 ADYTKAEQL 345
Cdd:COG3063     80 AYLERALEL 88
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1250-1381 9.91e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 9.91e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1250 QRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHF 1329
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1330 QQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEK 1381
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2070-2245 9.92e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 9.92e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2070 YFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLE 2149
Cdd:COG2956     11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2150 DHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSRANMKLQLDEPDLvgA 2229
Cdd:COG2956     91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA-----IEVLERLLKLGPENAHAYCELAELYLEQGDYDE--A 163

                          170
                   ....*....|....*.
gi 1223470867 2230 CQDWDKAVKLGNNSAR 2245
Cdd:COG2956    164 IEALEKALKLDPDCAR 179
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
594-688 1.00e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.71  E-value: 1.00e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  594 ARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEdYTKAIGLDANYSEAYESRGYLRYDQKDYAGAI 673
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....*
gi 1223470867  674 TDLDKLTDKNKKLYA 688
Cdd:COG3063     80 AYLERALELDPSALR 94
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1183-1423 1.05e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.31  E-value: 1.05e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1183 ALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYkigiSEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGsakyf 1262
Cdd:COG3914     22 AAAELALAAELEAAALAAALGLALLLLAALAEAAAAAL----LALAAGEAAAAAAALLLLAALLELAALLLQALG----- 92

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1263 tkDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLE 1342
Cdd:COG3914     93 --RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1343 KAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASL--GNAQAEKEDFAAALPNLNQAVTLGSKDK 1420
Cdd:COG3914    171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLlfALRQACDWEVYDRFEELLAALARGPSEL 250


                   ...
gi 1223470867 1421 LVF 1423
Cdd:COG3914    251 SPF 253
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1520-1633 1.12e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.12e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1520 QDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKIsFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGE 1599
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA-LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1223470867 1600 SRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQ 1633
Cdd:COG4235     94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1690-1803 1.55e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 1.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1690 NNTDAiYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRAL 1769
Cdd:COG4235     15 NDAEG-WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1223470867 1770 SRFKTADYRGALTDLTTALQYSPNDEDLNVLAGR 1803
Cdd:COG4235     94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 771-883 1.65e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 1.65e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  771 AEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLG 850
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1223470867  851 SSDVDLHTKLALSYCELKQYAAALPELTKAISL 883
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 1265-1415 1.67e-07

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 53.92  E-value: 1.67e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1265 DYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKA 1344
Cdd:NF040959    52 RYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLKIKDYEKAVEDLEEA 131

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1345 KELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTL 1415
Cdd:NF040959   132 LEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMEL 202
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 331-449 1.77e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 1.77e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  331 EYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQA 410
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1223470867  411 IALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNK 449
Cdd:COG5010    115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1661-1858 1.87e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.54  E-value: 1.87e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1661 LYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQ 1740
Cdd:COG3914     12 LAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1741 NLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTK 1820
Cdd:COG3914     92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1223470867 1821 VVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEM 1858
Cdd:COG3914    172 ALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
562-651 1.91e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 1.91e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  562 YEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIAdYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALED 641
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                           90
                   ....*....|
gi 1223470867  642 YTKAIGLDAN 651
Cdd:COG3063     82 LERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1609-1722 2.04e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 2.04e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1609 AAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDL 1688
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1223470867 1689 GNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQM 1722
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
291-379 2.25e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 2.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  291 ALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIAdYTKAEQLGVADKKLYVQRANSRFRKEDYAGAI 370
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867  371 ADYDKAVSL 379
Cdd:COG3063     80 AYLERALEL 88
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1132-1244 2.29e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 2.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1132 KAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKL 1211
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1223470867 1212 GATDKETTYKIGISEFETQAYAAAIQTLTKAQQ 1244
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1340-1630 2.29e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 2.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1340 NLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAvtlgskd 1419
Cdd:COG3914      6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA------- 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1420 kLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKW 1499
Cdd:COG3914     79 -ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1500 VQKDYKAAADDATKAIDLGAQDPLAYYvrgnaryelkdykgatedlvkvtpadninekisfsNLGNAYFELKDYTAANTA 1579
Cdd:COG3914    158 RLGRLEEAIAALRRALELDPDNAEALN-----------------------------------NLGNALQDLGRLEEAIAA 202

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1580 LSKAVELGVSDVKVLGNRGESRYMLKDYE--AAITDFNKVIAQEPKNARALHL 1630
Cdd:COG3914    203 YRRALELDPDNADAHSNLLFALRQACDWEvyDRFEELLAALARGPSELSPFAL 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
829-922 2.85e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 2.85e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  829 ARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALpELTKAISLGATEPRIYKQRATASFDQKDYTNAI 908
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....
gi 1223470867  909 ADLNKAAELGDSSR 922
Cdd:COG3063     80 AYLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1926-2060 3.70e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.88  E-value: 3.70e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1926 LALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFR 2005
Cdd:COG5010     15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 2006 GMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAI 2060
Cdd:COG5010     95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1146-1280 3.78e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 3.78e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1146 SDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGIS 1225
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 1226 EFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEAD 1280
Cdd:COG4783     82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1048-1425 3.89e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 55.38  E-value: 3.89e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1048 AFYNRGMARYEQKDFKGAVADLEKAKSMgSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQ 1127
Cdd:TIGR00990  129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1128 KQYAKAIEDLN-KAVTGGISDVTVH--YNRGLALYEQQDYKNAVTD----LELAKKMGK-----NSKALYAMLGDAAfEL 1195
Cdd:TIGR00990  208 GKYADALLDLTaSCIIDGFRNEQSAqaVERLLKKFAESKAKEILETkpenLPSVTFVGNylqsfRPKPRPAGLEDSN-EL 286

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1196 EEyEQALSALKQAQKLGATDKETTYKIGISEFETQayaaaiqtLTKAQqAGVSEQRLLFAKGSAKYFTKDYKGALVDLNK 1275
Cdd:TIGR00990  287 DE-ETGNGQLQLGLKSPESKADESYEEAARAFEKA--------LDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSK 356

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1276 VTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELgrtDRD-L 1354
Cdd:TIGR00990  357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL---DPDfI 433

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1355 FEH--LGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLN 1425
Cdd:TIGR00990  434 FSHiqLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2148-2245 4.29e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.78  E-value: 4.29e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2148 LEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssfADFDKAIQLNPNFAEAYTSRANMKLQLDEPDlv 2227
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA------IALEKALKLDPNNAEALLNLAELLLELGDYD-- 76

                           90
                   ....*....|....*...
gi 1223470867 2228 GACQDWDKAVKLGNNSAR 2245
Cdd:COG3063     77 EALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1802-1929 4.54e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 4.54e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1802 GRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTG 1881
Cdd:COG4783     11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1223470867 1882 SLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALD 1929
Cdd:COG4783     91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1489-1624 4.76e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 4.76e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1489 DAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNiNEKISFSNLGNAYF 1568
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDP-DEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1223470867 1569 ELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKN 1624
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1124-1213 6.86e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.40  E-value: 6.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1124 LVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVtDLELAKKMGKNSKALYAMLGDAAFELEEYEQALS 1203
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|
gi 1223470867 1204 ALKQAQKLGA 1213
Cdd:COG3063     81 YLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 536-684 7.02e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 7.02e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  536 AEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLG 615
Cdd:COG5010      5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867  616 VSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNK 684
Cdd:COG5010     85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1501-1631 7.43e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 7.43e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1501 QKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKIsFSNLGNAYFELKDYTAANTAL 1580
Cdd:COG3914     91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA-YLNLGEALRRLGRLEEAIAAL 169

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1581 SKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLR 1631
Cdd:COG3914    170 RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 251-379 7.65e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 7.65e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  251 YYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENK 330
Cdd:COG5010     23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867  331 EYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSL 379
Cdd:COG5010    103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 468-580 1.15e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 1.15e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  468 AIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAG 547
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1223470867  548 LQTAHVFERRGKSRYEQKNYTEAIADYSKAIEL 580
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
526-614 1.24e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 1.24e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  526 ARFEQNKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIAdYSKAIELGTSNKEVYYDRGMARYSLKDYAGAI 605
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867  606 ADYDKAVSL 614
Cdd:COG3063     80 AYLERALEL 88
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1883-2007 1.34e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 1.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1883 LADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGS 1962
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1223470867 1963 KEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGM 2007
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1303-1419 1.40e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 1.40e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1303 AIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKG 1382
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1223470867 1383 SQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKD 1419
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 792-1226 1.46e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 53.45  E-value: 1.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  792 RGKSRFEQKNYADANADLSKAIELgaNEADVYY-DRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQY 870
Cdd:TIGR00990  133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYsNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  871 AAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSV-----SLMRGLSYYHLNKHDEAERDL 945
Cdd:TIGR00990  211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVgnylqSFRPKPRPAGLEDSNELDEET 290

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  946 SQAIAR-GEKSTEVYAHLGYsryalknyTGAIAAFDlavpkpvaapaaakvpakgAKPAASAAADVPAQVYEQRGQAKFF 1024
Cdd:TIGR00990  291 GNGQLQlGLKSPESKADESY--------EEAARAFE-------------------KALDLGKLGEKEAIALNLRGTFKCL 343

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1025 TKDYAGAIADLTKAI----------------------------------GKGVSNTEAFYNRGMARYEQKDFKGAVADLE 1070
Cdd:TIGR00990  344 KGKHLEALADLSKSIeldprvtqsyikrasmnlelgdpdkaeedfdkalKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1071 KAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAV-----TGGI 1145
Cdd:TIGR00990  424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIelekeTKPM 503

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1146 S-DVTVHYNRGLALYE-QQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIG 1223
Cdd:TIGR00990  504 YmNVLPLINKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAIS 583


                   ...
gi 1223470867 1224 ISE 1226
Cdd:TIGR00990  584 YAE 586
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 468-614 1.63e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  468 AIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAIGAG 547
Cdd:COG5010      5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867  548 LQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSL 614
Cdd:COG5010     85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1454-1586 1.90e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 1.90e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1454 AQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARY 1533
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1534 ELKDYKGATEDLVKVTPADNINEKISFsNLGNAYFELKDYTAANTALSKAVEL 1586
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYL-RLARAYRALGRPDEAIAALEKALEL 135
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
361-452 1.93e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.24  E-value: 1.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  361 FRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEdYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIAD 440
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                           90
                   ....*....|..
gi 1223470867  441 LDKLTDKNKKLY 452
Cdd:COG3063     82 LERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
797-885 2.63e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 2.63e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  797 FEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKgAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPE 876
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYD-EAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81


                   ....*....
gi 1223470867  877 LTKAISLGA 885
Cdd:COG3063     82 LERALELDP 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1370-1498 2.70e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 2.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1370 AAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITL 1449
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 1223470867 1450 GVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIK 1498
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 403-544 2.89e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 2.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  403 ALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATD 482
Cdd:COG5010      8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  483 KEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEAAYTQAI 544
Cdd:COG5010     88 PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1566-1654 2.99e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 2.99e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1566 AYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAItDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAV 1645
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867 1646 ADLTEAEAA 1654
Cdd:COG3063     80 AYLERALEL 88
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 802-951 3.14e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 3.14e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  802 YADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQYAAALPELTKAI 881
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  882 SLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIAR 951
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 212-345 3.43e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 3.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  212 YRQDRAFLSAAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLA 291
Cdd:COG5010     18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867  292 LYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQL 345
Cdd:COG5010     98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1213-1347 4.03e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 4.03e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1213 ATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGS 1292
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867 1293 AKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKEL 1347
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 2149-2220 4.19e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 51.33  E-value: 4.19e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 2149 EDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSR--ANMKLQ 2220
Cdd:PLN03088    16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEA-----VADANKAIELDPSLAKAYLRKgtACMKLE 84
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1780-1898 4.42e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 4.42e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1780 ALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMG 1859
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 1223470867 1860 LNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQ 1898
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 300-416 4.55e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 4.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  300 EAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSL 379
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1223470867  380 GVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAA 416
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1747-1858 4.64e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 4.64e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1747 IADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGT 1826
Cdd:COG4235      3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1223470867 1827 KDENVYFYRGTAYLNMKEYQVSAKDLNKAIEM 1858
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 403-511 6.02e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.69  E-value: 6.02e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  403 ALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAG 479
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKalrLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1223470867  480 ATDKEVYLAKGLSLFELKNYAEAETELAKAIE 511
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 959-1109 6.62e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 6.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  959 YAHLGYSRYALKNYTGAIAAFDLAVPKPVAAPAAAKVPAKGAKPAASAAADVPAQVYEQRGQAKFFTKDYAGAIADLTKA 1038
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1039 IGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISL 1109
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1251-1435 6.67e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 6.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1251 RLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKT---KDKNGEVFFFLGNS 1327
Cdd:COG4785      3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalaLPDLAQLYYERGVA 82

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1328 HFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALP 1407
Cdd:COG4785     83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIA 162

                          170       180
                   ....*....|....*....|....*...
gi 1223470867 1408 NLNQAVTLGSKDKLVFLNRGNARYNQKD 1435
Cdd:COG4785    163 DLEKALELDPNDPERALWLYLAERKLDP 190
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 790-889 6.67e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 50.56  E-value: 6.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  790 ERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDVDLHTKLALSYCELKQ 869
Cdd:PLN03088     6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85

                           90       100
                   ....*....|....*....|
gi 1223470867  870 YAAALPELTKAISLGATEPR 889
Cdd:PLN03088    86 YQTAKAALEKGASLAPGDSR 105
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1519-1651 6.74e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.42  E-value: 6.74e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1519 AQDPLAYYVRGNARYELKDYKGATEDLVKVTPADNINEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRG 1598
Cdd:COG5010     16 LLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLA 95

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1599 ESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEA 1651
Cdd:COG5010     96 LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1183-1312 7.96e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 7.96e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1183 ALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYF 1262
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1263 TKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAK 1312
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 555-628 8.23e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 50.56  E-value: 8.23e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1223470867  555 ERRGKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSLKDYAGAIADYDKAVSLGVSEALVFYNRGKA 628
Cdd:PLN03088     6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1712-1835 8.68e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 8.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1712 AVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADYRGALTDLTTALQYS 1791
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1223470867 1792 PNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYR 1835
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLE 125
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
761-846 8.75e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 8.75e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  761 ARFEQNKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADAnADLSKAIELGANEADVYYDRGMARYALKDYKGAA 840
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*.
gi 1223470867  841 ADFEKA 846
Cdd:COG3063     80 AYLERA 85
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 216-377 9.34e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 9.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  216 RAFLSAAASYMEQK-WQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQ 294
Cdd:COG2956    111 EALRLLAEIYEQEGdWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE 190

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  295 QEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQrANSRFRKEDYAGAIADYD 374
Cdd:COG2956    191 QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLE 269


                   ...
gi 1223470867  375 KAV 377
Cdd:COG2956    270 RQL 272
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 699-846 9.51e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 9.51e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  699 DYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQA 778
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867  779 IGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKA 846
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1080-1244 1.00e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1080 LDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGiSDVTVHYNRGLALY 1159
Cdd:COG4785      6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALP-DLAQLYYERGVAYD 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1160 EQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTL 1239
Cdd:COG4785     85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADL 164


                   ....*
gi 1223470867 1240 TKAQQ 1244
Cdd:COG4785    165 EKALE 169
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1696-1900 1.02e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 1.02e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1696 YFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKY--IKAFSNRALSRFK 1773
Cdd:COG3914     11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLllAALLELAALLLQA 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1774 TADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVDKGTKDENVYFYRGTAYLNMKEYQVSAKDLN 1853
Cdd:COG3914     91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 1223470867 1854 KAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLF 1900
Cdd:COG3914    171 RALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1124-1211 1.06e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1124 LVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALS 1203
Cdd:COG5010     64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                   ....*...
gi 1223470867 1204 ALKQAQKL 1211
Cdd:COG5010    144 ALQRALGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 648-779 1.11e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.65  E-value: 1.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  648 LDANYSEAYESRGYLRYDQKDYAGAITDLDKLTDKNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLS 727
Cdd:COG5010     18 TKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL 97

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  728 LFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAI 779
Cdd:COG5010     98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1383-1504 1.31e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 1.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1383 SQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGK 1462
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1463 ARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDY 1504
Cdd:COG4783     81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 840-1211 1.48e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.37  E-value: 1.48e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  840 AADFEKAKGLGssDVDLHTKLALSYCELKQYAAALPEL----------TKAISLGA------TEPRIYKQRATASFDQKD 903
Cdd:TIGR00990   98 NAPVEPADELP--EIDESSVANLSEEERKKYAAKLKEKgnkayrnkdfNKAIKLYSkaieckPDPVYYSNRAACHNALGD 175

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  904 YTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAAFDLAV 983
Cdd:TIGR00990  176 WEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP 255

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  984 PKPVAAPAAAKVPAKGAKPAASAAADVPAQVYEQ--RGQAKFFTKD--------YAGAIADLTKAIGKG-VSNTEAF-YN 1051
Cdd:TIGR00990  256 ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEEtgNGQLQLGLKSpeskadesYEEAARAFEKALDLGkLGEKEAIaLN 335

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1052 -RGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQY 1130
Cdd:TIGR00990  336 lRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1131 AKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQK 1210
Cdd:TIGR00990  416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495


                   .
gi 1223470867 1211 L 1211
Cdd:TIGR00990  496 L 496
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 682-779 1.52e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 1.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  682 KNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADA 761
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                           90
                   ....*....|....*...
gi 1223470867  762 RFEQNKYKLAEAAYTQAI 779
Cdd:COG4235     95 AFQQGDYAEAIAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 870-980 1.65e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  870 YAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAI 949
Cdd:COG5010     36 NTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKAL 115

                           90       100       110
                   ....*....|....*....|....*....|.
gi 1223470867  950 ARGEKSTEVYAHLGYSRYALKNYTGAIAAFD 980
Cdd:COG5010    116 ALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 767-917 1.77e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 1.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  767 KYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKA 846
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  847 KGLGSSDVDLHTKLALSYCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAEL 917
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1579-1688 1.77e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 1.77e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1579 ALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKV 1658
Cdd:COG4235      5 RLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84

                           90       100       110
                   ....*....|....*....|....*....|
gi 1223470867 1659 VELYTNRGIAQYETKNYASSLTDLNKAIDL 1688
Cdd:COG4235     85 PEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 216-322 2.01e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  216 RAFLSAAASYMEQ-KWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQ 294
Cdd:COG4235     18 EGWLLLGRAYLRLgRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                           90       100
                   ....*....|....*....|....*...
gi 1223470867  295 QEQYKEAEKDFDKAVELNIADKDIYFYR 322
Cdd:COG4235     98 QGDYAEAIAAWQKLLALLPADAPARLLE 125
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 703-823 2.17e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  703 AIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQAIGAG 782
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1223470867  783 LQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVY 823
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1090-1177 2.51e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 2.51e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1090 YCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEdLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVT 1169
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                   ....*...
gi 1223470867 1170 DLELAKKM 1177
Cdd:COG3063     81 YLERALEL 88
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1404-1504 2.73e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 2.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1404 AALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSL 1483
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100
                   ....*....|....*....|.
gi 1223470867 1484 DNKLPDAYANRGFIKWVQKDY 1504
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDY 101
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1078-1174 2.79e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 2.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1078 SDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLA 1157
Cdd:COG5010     52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                           90
                   ....*....|....*..
gi 1223470867 1158 LYEQQDYKNAVTDLELA 1174
Cdd:COG5010    132 LLSLGQDDEAKAALQRA 148
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1012-1141 3.31e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 3.31e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG5010     20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAV 1141
Cdd:COG5010    100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 447-544 3.34e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 3.34e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  447 KNKKLYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADA 526
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                           90
                   ....*....|....*...
gi 1223470867  527 RFEQNKYKSAEAAYTQAI 544
Cdd:COG4235     95 AFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1026-1111 3.36e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1026 KDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVAdLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDK 1105
Cdd:COG3063      6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                   ....*.
gi 1223470867 1106 AISLGA 1111
Cdd:COG3063     85 ALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 282-414 3.64e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 3.64e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  282 PNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADKDIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRF 361
Cdd:COG5010     20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867  362 RKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALD 414
Cdd:COG5010    100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1011-1115 3.73e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 48.24  E-value: 3.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1011 PAQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSY 1090
Cdd:PLN03088     1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                           90       100
                   ....*....|....*....|....*
gi 1223470867 1091 CELKQFTAALPDLDKAISLGATDPK 1115
Cdd:PLN03088    81 MKLEEYQTAKAALEKGASLAPGDSR 105
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 2011-2096 3.80e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 3.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2011 NLKQYRDAVADFNKALSFNPKN---GEAYSGLANAYLVQEDYEKAISNFdLAIVNKFTDKKT----YFGSALALYRLQSY 2083
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAF-EKLLKRYPDSPKapdaLLKLGLSYLELGDY 83

                           90
                   ....*....|...
gi 1223470867 2084 AEAVKDFDEVLKK 2096
Cdd:COG1729     84 DKARATLEELIKK 96
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1617-1758 4.08e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 4.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1617 VIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIY 1696
Cdd:COG5010     12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELY 91

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1697 FHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDP 1758
Cdd:COG5010     92 YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2074-2205 5.28e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 5.28e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2074 ALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEG 2153
Cdd:COG5010     27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 2154 AITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNP 2205
Cdd:COG5010    107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA-----KAALQRALGTSP 153
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 1990-2062 6.49e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 48.54  E-value: 6.49e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1990 QAIAADSAYvQAYTfRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVN 2062
Cdd:PRK11447   262 QKQLADPAF-RARA-QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1395-1487 6.59e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 6.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1395 AQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSItDYSQAITLGVNTAQVYNLRGKARFKTTDNVGAL 1474
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|...
gi 1223470867 1475 ADFNKALSLDNKL 1487
Cdd:COG3063     80 AYLERALELDPSA 92
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 872-980 6.62e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 6.62e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  872 AALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERDLSQAIAR 951
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100
                   ....*....|....*....|....*....
gi 1223470867  952 GEKSTEVYAHLGYSRYALKNYTGAIAAFD 980
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQ 109
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
493-580 6.79e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 6.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  493 LFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQNKYKSAEaAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIA 572
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                   ....*...
gi 1223470867  573 DYSKAIEL 580
Cdd:COG3063     81 YLERALEL 88
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 638-746 6.81e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 6.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  638 ALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDK---LTDKNKKLYATRGLSKFQTKDYAGAIADLGEAEKAG 714
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKalrLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1223470867  715 ATDKEVYLAKGLSLFELKNYAEAETELAKAIE 746
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
695-779 7.06e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 7.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  695 FQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAEtELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAA 774
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81


                   ....*
gi 1223470867  775 YTQAI 779
Cdd:COG3063     82 LERAL 86
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1883-2030 7.09e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 7.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1883 LADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIVDFDKATGLGS 1962
Cdd:COG5010      6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1963 KEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNP 2030
Cdd:COG5010     86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1234-1353 7.29e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 7.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1234 AAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKT 1313
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1223470867 1314 KDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRD 1353
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1012-1114 8.75e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 8.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1012 AQVYEQRGQAKFFTKDYAGAIADLTKAIGKGVSNTEAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYC 1091
Cdd:COG4235     17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                           90       100
                   ....*....|....*....|...
gi 1223470867 1092 ELKQFTAALPDLDKAISLGATDP 1114
Cdd:COG4235     97 QQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
458-544 9.19e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 9.19e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  458 AKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAEtELAKAIEAGEKSQNVFEHLADARFEQNKYKSAE 537
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*..
gi 1223470867  538 AAYTQAI 544
Cdd:COG3063     80 AYLERAL 86
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 559-663 1.02e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.83  E-value: 1.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  559 KSRYEQKNYTEAIADYSKAIELGTSNK---EVYYDRGMARYSLKDYAGAIADYDKAVSLG-----VSEALvfYNRGKAKQ 630
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYpdspkAPDAL--LKLGLSYL 78

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1223470867  631 QTGNPQGALEDYTKAIGLDANYSEAYESRGYLR 663
Cdd:COG1729     79 ELGDYDKARATLEELIKKYPDSEAAKEARARLA 111
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1185-1276 1.19e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1185 YAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTK 1264
Cdd:COG4235     20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                           90
                   ....*....|..
gi 1223470867 1265 DYKGALVDLNKV 1276
Cdd:COG4235    100 DYAEAIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 217-312 1.21e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 1.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  217 AFLSAAASYMEQ-KWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLALYQQ 295
Cdd:COG4783     40 AFALLGEILLQLgDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119

                           90
                   ....*....|....*..
gi 1223470867  296 EQYKEAEKDFDKAVELN 312
Cdd:COG4783    120 GRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
628-715 1.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  628 AKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAI--TDLDKLTDKNKKLYATRGLSKFQTKDYAGAIA 705
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIalEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|
gi 1223470867  706 DLGEAEKAGA 715
Cdd:COG3063     81 YLERALELDP 90
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1702-1793 1.45e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1702 AKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIAdFDEALKLDPKYIKAFSNRALSRFKTADYRGAL 1781
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1223470867 1782 TDLTTALQYSPN 1793
Cdd:COG3063     80 AYLERALELDPS 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1095-1242 1.71e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 1.71e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1095 QFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELA 1174
Cdd:COG3914     25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRA 104

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1175 KKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKA 1242
Cdd:COG3914    105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1971-2144 1.97e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.93  E-value: 1.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1971 RGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYE 2050
Cdd:PLN03088     8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2051 KAISNFDLaivnkftdkktyfGSALALYRlQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKL 2130
Cdd:PLN03088    88 TAKAALEK-------------GASLAPGD-SRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPS 153

                          170
                   ....*....|....
gi 1223470867 2131 SPKSIRGYLQRGQA 2144
Cdd:PLN03088   154 KPKYRHEFYQKPEE 167
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
505-659 2.23e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 45.26  E-value: 2.23e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  505 ELAKAIEAGEKSQNvFEHLADARFEQNKYKSAEAAYTQAI-GAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTS 583
Cdd:COG4700     78 ELEKALEFADTVQN-RVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPD 156

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867  584 NK--EVYYDRGMARYSLKDYAGAIADYDKAVSLGVS-EALVFYnrGKAKQQTGNPQGALEDYtKAIGLDANYSEAYESR 659
Cdd:COG4700    157 FKssDAHLLYARALEALGDLEAAEAELEALARRYSGpEARYRY--AKFLARQGRTAEAKELL-EEILDEAKHMPKHYRR 232
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
864-951 2.46e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  864 YCELKQYAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIAdLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAER 943
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                   ....*...
gi 1223470867  944 DLSQAIAR 951
Cdd:COG3063     81 YLERALEL 88
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1231-1378 3.27e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 3.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1231 AYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIA 1310
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1311 AKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAA 1378
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1389-1504 3.30e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 3.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1389 YASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTT 1468
Cdd:COG5010     23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1223470867 1469 DNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDY 1504
Cdd:COG5010    103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1693-1792 3.36e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 3.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1693 DAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRF 1772
Cdd:COG5010     54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                           90       100
                   ....*....|....*....|
gi 1223470867 1773 KTADYRGALTDLTTALQYSP 1792
Cdd:COG5010    134 SLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 525-613 3.53e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 3.53e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  525 DARFEQNKYKSAEAAYTQAIGA---GLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNK---EVYYDRGMARYSL 598
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80

                           90
                   ....*....|....*
gi 1223470867  599 KDYAGAIADYDKAVS 613
Cdd:COG1729     81 GDYDKARATLEELIK 95
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1698-1794 3.65e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 45.16  E-value: 3.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1698 HRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYIKAFSNRALSRFKTADY 1777
Cdd:PLN03088     7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                           90
                   ....*....|....*..
gi 1223470867 1778 RGALTDLTTALQYSPND 1794
Cdd:PLN03088    87 QTAKAALEKGASLAPGD 103
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 1055-1493 3.98e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 45.75  E-value: 3.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1055 ARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSycELKQFTAALPDLdkaislgatdpklfyhrGNELVAQKQYAKAI 1134
Cdd:TIGR00990   87 KTEEKKSTAPKNAPVEPADELPEIDESSVANLSEE--ERKKYAAKLKEK-----------------GNKAYRNKDFNKAI 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1135 EDLNKAVTggISDVTVHYNRGLALYeqqdykNAVTDLELAKKMGKnskalyamlgdAAFELE-EYEQAL----SALKQAQ 1209
Cdd:TIGR00990  148 KLYSKAIE--CKPDPVYYSNRAACH------NALGDWEKVVEDTT-----------AALELDpDYSKALnrraNAYDGLG 208

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1210 KLGATDKETTYKIGISEFETQAYAAAI------QTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGAL--VDLNKVTEADY 1281
Cdd:TIGR00990  209 KYADALLDLTASCIIDGFRNEQSAQAVerllkkFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPrpAGLEDSNELDE 288

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1282 KTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKN--GE----VFFFLGNSHFQQKDYKATITNLEKAKELGRTDRDLF 1355
Cdd:TIGR00990  289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGklGEkeaiALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSY 368

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1356 EHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNARYNQKD 1435
Cdd:TIGR00990  369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1436 YKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYAN 1493
Cdd:TIGR00990  449 IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1351-1484 4.14e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1351 DRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTLGSKDKLVFLNRGNAR 1430
Cdd:COG5010     19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1223470867 1431 YNQKDYKNSITDYSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLD 1484
Cdd:COG5010     99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 451-580 4.30e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  451 LYVTRGLAKYQTKDYNGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFEHLADARFEQ 530
Cdd:COG5010     22 TLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRS 101

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1223470867  531 NKYKSAEAAYTQAIGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIEL 580
Cdd:COG5010    102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
899-980 4.34e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 4.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  899 FDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEAERdLSQAIARGEKSTEVYAHLGYSRYALKNYTGAIAA 978
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81


                   ..
gi 1223470867  979 FD 980
Cdd:COG3063     82 LE 83
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
728-818 4.38e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 4.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  728 LFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEaAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANA 807
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                           90
                   ....*....|.
gi 1223470867  808 DLSKAIELGAN 818
Cdd:COG3063     81 YLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1095-1242 4.39e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1095 QFTAALPDLDKAISLGATDPKLFYHRGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELA 1174
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 1175 KKMGKNSKALYAMLGDAAFELEEYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKA 1242
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2138-2239 4.43e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 4.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2138 YLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAgvkssFADFDKAIQLNPNFAEAYTSRANM 2217
Cdd:COG5010     57 ESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEA-----KEYYEKALALSPDNPNAYSNLAAL 131

                           90       100
                   ....*....|....*....|..
gi 1223470867 2218 KLQLDEPDLvgACQDWDKAVKL 2239
Cdd:COG5010    132 LLSLGQDDE--AKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1942-2031 4.78e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 4.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1942 LALKEYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVAdFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVAD 2021
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                           90
                   ....*....|
gi 1223470867 2022 FNKALSFNPK 2031
Cdd:COG3063     82 LERALELDPS 91
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1625-1719 5.50e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 44.78  E-value: 5.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1625 ARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTDLNKAIDLGNNTDAIYFHRGNAKF 1704
Cdd:PLN03088     2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                           90
                   ....*....|....*
gi 1223470867 1705 RTNDLTGAVADYDKA 1719
Cdd:PLN03088    82 KLEEYQTAKAALEKG 96
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 692-779 6.82e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 6.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  692 LSKFQTKDYAGAIADLGEAEKAGATDK---EVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFE---HLADARFEQ 765
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLEL 80

                           90
                   ....*....|....
gi 1223470867  766 NKYKLAEAAYTQAI 779
Cdd:COG1729     81 GDYDKARATLEELI 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1123-1210 6.82e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 6.82e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1123 ELVAQKQYAKAIEDLNKAVTGGISDV---TVHYNRGLALYEQQDYKNAVTDLE-LAKKMGKNSKALYAM--LGDAAFELE 1196
Cdd:COG1729      2 ALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEkLLKRYPDSPKAPDALlkLGLSYLELG 81

                           90
                   ....*....|....
gi 1223470867 1197 EYEQALSALKQAQK 1210
Cdd:COG1729     82 DYDKARATLEELIK 95
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 212-312 7.97e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 7.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  212 YRQDRAFLSAAASYMEQKWQKVVTKADESLINNAKNGSTYYLRGAAKYQLKDLPAAVTDFNKAASLNSTPPNLYLWRGLA 291
Cdd:COG5010     52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                           90       100
                   ....*....|....*....|.
gi 1223470867  292 LYQQEQYKEAEKDFDKAVELN 312
Cdd:COG5010    132 LLSLGQDDEAKAALQRALGTS 152
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1269-1380 8.46e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 8.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1269 ALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELG 1348
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|..
gi 1223470867 1349 RTDRDLFEHLGLAQYEEKDYTAAIENLKAAKE 1380
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1336-1449 1.01e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1336 ATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTL 1415
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1223470867 1416 GSKDKLVFLNRGNARYNQKDYKNSITDYSQAITL 1449
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
Trypsin_2 pfam13365
Trypsin-like peptidase domain; This family includes trypsin-like peptidase domains.
 43-176 1.06e-03

Trypsin-like peptidase domain; This family includes trypsin-like peptidase domains.


Pssm-ID: 433149 [Multi-domain]  Cd Length: 142  Bit Score: 41.64  E-value: 1.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867   43 GTGVFVDANGTLLaqT-----DLFVNPNISRIQARNTDGDKYnVANVLSDDASAGLVKFSVSNPsGKPFPFIKVTTTR-L 116
Cdd:pfam13365    1 GTGFVVSSDGLVL--TnahvvDDAEEAAVELVSVVLADGREY-PATVVARDPDLDLALLRVSGD-GRGLPPLPLGDSEpL 76

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1223470867  117 KQESNIN-VQYVTDYLEMMKNDAVLS-LAAQIDGY--GYAMQTNSTLSM-HSGSPVLSAENTLVG 176
Cdd:pfam13365   77 VGGERVYaVGYPLGGEKLSLSEGIVSgVDEGRDGGddGRVIQTDAALSPgSSGGPVFDADGRVVG 141
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
325-419 1.13e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.15  E-value: 1.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  325 VRYENKEYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIAdYDKAVSLGVSEALIYNNRGKAKQLTSNAQGAL 404
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....*
gi 1223470867  405 EDYTQAIALDAAYLK 419
Cdd:COG3063     80 AYLERALELDPSALR 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 290-378 1.14e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 1.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  290 LALYQQEQYKEAEKDFDKAVELNIADK---DIYFYRGNVRYENKEYAGAIADYTKAEQLGVADKKL---YVQRANSRFRK 363
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLEL 80

                           90
                   ....*....|....*
gi 1223470867  364 EDYAGAIADYDKAVS 378
Cdd:COG1729     81 GDYDKARATLEELIK 95
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1443-1495 1.24e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.62  E-value: 1.24e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 1443 YSQAITLGVNTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRG 1495
Cdd:PLN03088    25 YTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1473-1622 1.33e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1473 ALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKVTpAD 1552
Cdd:COG5010      5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL-QL 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1553 NINEKISFSNLGNAYFELKDYTAANTALSKAVELGVSDVKVLGNRGESRYMLKDYEAAITDFNKVIAQEP 1622
Cdd:COG5010     84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 870-941 1.45e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.24  E-value: 1.45e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867  870 YAAALPELTKAISLGATEPRIYKQRATASFDQKDYTNAIADLNKAAELGDSSRSVSLMRGLSYYHLNKHDEA 941
Cdd:PLN03088    18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89
TPR_11 pfam13414
TPR repeat;
2142-2178 1.46e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 1.46e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1223470867 2142 GQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALA 2178
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLA 37
COG3899 COG3899
Predicted ATPase [General function prediction only];
521-841 1.46e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.08  E-value: 1.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  521 EHLADARFEQNKYKSAEAA--YTQAiGAGLQTAHVFERRGKSRYEQKNYTEAIADYSKAIELGTSNK------EVYYDRG 592
Cdd:COG3899    674 RALEARGPEPLEERLFELAhhLNRA-GERDRAARLLLRAARRALARGAYAEALRYLERALELLPPDPeeeyrlALLLELA 752

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  593 MARYSLKDYAGAIADYDKAVSLGVSEALvfynrgkAKQQTGNPQGALEDYT-KAIGLDANYSEAYEsrgylrydqkDYAG 671
Cdd:COG3899    753 EALYLAGRFEEAEALLERALAARALAAL-------AALRHGNPPASARAYAnLGLLLLGDYEEAYE----------FGEL 815

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  672 AITDLDKLTDKNK--KLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELknYAEAETELAKAIEAGE 749
Cdd:COG3899    816 ALALAERLGDRRLeaRALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAA--AAAAAAAALAAAAAAA 893

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  750 KSQKVFEHLADARFEQnKYKLAEAAYTQAIGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANEADVYYDRGMA 829
Cdd:COG3899    894 ARLLAAAAAALAAAAA-AAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAAL 972

                          330
                   ....*....|..
gi 1223470867  830 RYALKDYKGAAA 841
Cdd:COG3899    973 AAAAAAAAAAAA 984
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 2112-2169 1.47e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.24  E-value: 1.47e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867 2112 IELDKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNA 2169
Cdd:PLN03088    47 IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 600-746 1.49e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 1.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  600 DYAGAIADYDKAVSLGVSEALVFYNRGKAKQQTGNPQGALEDYTKAIGLDANYSEAYESRGYLRYDQKDYAGAITDLDK- 678
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQa 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  679 --LTDKNKKLYATRGLSKFQTKDYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIE 746
Cdd:COG5010     81 lqLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 699-815 1.62e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 1.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  699 DYAGAIADLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAAYTQA 778
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1223470867  779 IGAGLQTAHVFERRGKSRFEQKNYADANADLSKAIEL 815
Cdd:COG5010    115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1682-1823 1.75e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1682 LNKAIDLGNNTDAIYFHRGNAKFRTNDLTGAVADYDKAQQMGYQSAILFNNRGKAKQLQNLFPASIADFDEALKLDPKYI 1761
Cdd:COG5010      9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1223470867 1762 KAFSNRALSRFKTADYRGALTDLTTALQYSPNDEDLNVLAGRSHLELKEYRESVPYLTKVVD 1823
Cdd:COG5010     89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1200-1317 1.75e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1200 QALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKVTEA 1279
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1223470867 1280 DYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKN 1317
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
244-312 1.79e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 1.79e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1223470867  244 NAKNGSTYYLRGAAKYQLKDLPAAVtDFNKAASLNSTPPNLYLWRGLALYQQEQYKEAEKDFDKAVELN 312
Cdd:COG3063     22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1946-2030 1.79e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.85  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1946 EYEPAIVDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAVADFDQAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKA 2025
Cdd:PLN03088    17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG 96


                   ....*
gi 1223470867 2026 LSFNP 2030
Cdd:PLN03088    97 ASLAP 101
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 457-544 1.80e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 1.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  457 LAKYQTKDYNGAIADLGEAEKAGATDK---EVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQNVFE---HLADARFEQ 530
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLEL 80

                           90
                   ....*....|....
gi 1223470867  531 NKYKSAEAAYTQAI 544
Cdd:COG1729     81 GDYDKARATLEELI 94
TPR_11 pfam13414
TPR repeat;
558-598 1.86e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 1.86e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1223470867  558 GKSRYEQKNYTEAIADYSKAIELGTSNKEVYYDRGMARYSL 598
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 257-344 1.94e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 1.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  257 AKYQLKDLPAAVTDFNKAASLNSTP---PNLYLWRGLALYQQEQYKEAEKDFDKAVELNIADK---DIYFYRGNVRYENK 330
Cdd:COG1729      2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81

                           90
                   ....*....|....
gi 1223470867  331 EYAGAIADYTKAEQ 344
Cdd:COG1729     82 DYDKARATLEELIK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1906-1995 1.97e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1906 ILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALKEYEPAIvDFDKATGLGSKEKLVLFGRGKAKYLLGNNAGAV 1985
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|
gi 1223470867 1986 ADFDQAIAAD 1995
Cdd:COG3063     80 AYLERALELD 89
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 2021-2100 2.25e-03

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 42.57  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2021 DFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKTYFGSALALYRLQSYAEAVKDFDEVLKKDSKD 2100
Cdd:PRK11189    86 DFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1866-1957 2.39e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 2.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1866 FANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLILQMISRHKDAIEDFSKSVSLALDVPAAYGHRGTSKLALK 1945
Cdd:COG4235     20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99

                           90
                   ....*....|..
gi 1223470867 1946 EYEPAIVDFDKA 1957
Cdd:COG4235    100 DYAEAIAAWQKL 111
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1269-1415 2.75e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 2.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1269 ALVDLNKVTEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKELG 1348
Cdd:COG5010      5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1223470867 1349 RTDRDLFEHLGLAQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALPNLNQAVTL 1415
Cdd:COG5010     85 PNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 331-475 2.78e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.71  E-value: 2.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  331 EYAGAIADYTKAEQLGVADKKLYVQRANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQA 410
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1223470867  411 IALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDYNGAIADLGEA 475
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKalaLSPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1452-1552 2.97e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 2.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1452 NTAQVYNLRGKARFKTTDNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYKAAADDATKAIDLGAQDPLAYYVRGNA 1531
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                           90       100
                   ....*....|....*....|....
gi 1223470867 1532 RYELKDYKGAT---EDLVKVTPAD 1552
Cdd:COG4235     95 AFQQGDYAEAIaawQKLLALLPAD 118
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 399-489 3.00e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  399 NAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIADLDK---LTDKNKKLYVTRGLAKYQTKDYNGAIADLGEA 475
Cdd:COG4235     32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERalaLDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111

                           90
                   ....*....|....
gi 1223470867  476 EKAGATDKEVYLAK 489
Cdd:COG4235    112 LALLPADAPARLLE 125
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2076-2167 3.08e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 3.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2076 ALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIAdLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAI 2155
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 1223470867 2156 TDYNKAAEIEPN 2167
Cdd:COG3063     80 AYLERALELDPS 91
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 1047-1377 3.10e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 3.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1047 EAFYNRGMARYEQKDFKGAVADLEKAKSMGSSDLDLHTRLAVSYCELKQFTAALPDLDKAISLGATDP--KLFY----HR 1120
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGyeKYLYlgqlSG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1121 GNElvAQKQYAKAIEDLNKAvtggisdvtvhynrgLALYEQQDYKNAVTDLELAKKMgknSKALYAM----LGDAAFELE 1196
Cdd:cd24142     81 GEE--ALQYYEKGIEILEEE---------------LQALQAASAEAEEEAEELKRKL---SSALCALaeiyMTDLCDEPD 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1197 EYEQALSALKQAQKLGATDKETT-----YKIGISEFEtQAYAAAIQTLTKaqqagvseqrllfakgsakyfTKDYKGALV 1271
Cdd:cd24142    141 AEQRCEELITKALELDPTNPEALqtlasLRISQQRPD-EAKEALRRSLEL---------------------WKDLKEEDE 198

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1272 DLNKVTEADYKTDEFYANRGS-AKYLT--KDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYkatitNLEKAKELG 1348
Cdd:cd24142    199 EEAEEDEAEEEDVPSYEFRISlAKLLIelEMYEEALEVLEQLLDEDDEDVEVWYLLGWAYYLLGEK-----EQEEAAELL 273

                          330       340       350
                   ....*....|....*....|....*....|...
gi 1223470867 1349 RTDRDLFEH----LGLAQYEEKDYTAAIENLKA 1377
Cdd:cd24142    274 RDARELLEKalklYEKLEYEDEELLEHVEELLA 306
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 2115-2206 3.52e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.08  E-value: 3.52e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 2115 DKFDDAIADLSDYIKLSPKSIRGYLQRGQARIGLEDHEGAITDYNKAAEIEPNNANIYYYRALAKASLKDTTDAGvkssf 2194
Cdd:PLN03088    16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK----- 90

                           90
                   ....*....|..
gi 1223470867 2195 ADFDKAIQLNPN 2206
Cdd:PLN03088    91 AALEKGASLAPG 102
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
399-480 3.86e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 3.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  399 NAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYAGAIA--DLDKLTDKNKKLYVTRGLAKYQTKDYNGAIADLGEAE 476
Cdd:COG3063      7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAleKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86


                   ....
gi 1223470867  477 KAGA 480
Cdd:COG3063     87 ELDP 90
TPR_1 pfam00515
Tetratricopeptide repeat;
282-312 4.12e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.12e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1223470867  282 PNLYLWRGLALYQQEQYKEAEKDFDKAVELN 312
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1602-1688 4.21e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 4.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1602 YMLKDYEAAITDFNKVIAQEPKNARALHLRGQSKFVKNDFAGAVADLTEAEAAGVKVVELYTNRGIAQYETKNYASSLTD 1681
Cdd:COG5010     65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                   ....*..
gi 1223470867 1682 LNKAIDL 1688
Cdd:COG5010    145 LQRALGT 151
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1973-2060 4.25e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 4.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1973 KAKYLLGNNAGAVADFDQAIAA--DSAYV-QAYTFRGMAKTNLKQYRDAVADFNKALSFNPKN---GEAYSGLANAYLVQ 2046
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRypNSPLApDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                           90
                   ....*....|....
gi 1223470867 2047 EDYEKAISNFDLAI 2060
Cdd:COG1729     81 GDYDKARATLEELI 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 1531-1627 4.34e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 4.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1531 ARYELKDYKGAT---EDLVKVTPADNINEKISFsNLGNAYFELKDYTAANTALSKAVELGVSDVKV---LGNRGESRYML 1604
Cdd:COG1729      2 ALLKAGDYDEAIaafKAFLKRYPNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLEL 80

                           90       100
                   ....*....|....*....|...
gi 1223470867 1605 KDYEAAITDFNKVIAQEPKNARA 1627
Cdd:COG1729     81 GDYDKARATLEELIKKYPDSEAA 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1990-2132 4.41e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 4.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1990 QAIAADSAYVQAYTFRGMAKTNLKQYRDAVADFNKALSFNPKNGEAYSGLANAYLVQEDYEKAISNFDLAIVNKFTDKKT 2069
Cdd:COG5010     11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1223470867 2070 YFGSALALYRLQSYAEAVKDFDEVLKKDSKDTAAYYYRASAYIELDKFDDAIADLSDYIKLSP 2132
Cdd:COG5010     91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 1120-1215 5.43e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 41.99  E-value: 5.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1120 RGNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQDYKNAVTDLELAKKMGKNSKAL-----------YAML 1188
Cdd:PRK11447   275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRdkwesllkvnrYWLL 354

                           90       100       110
                   ....*....|....*....|....*....|
gi 1223470867 1189 ---GDAAFELEEYEQALSALKQAQKLGATD 1215
Cdd:PRK11447   355 iqqGDAALKANNLAQAERLYQQARQVDNTD 384
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1197-1347 5.43e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.94  E-value: 5.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1197 EYEQALSALKQAQKLGATDKETTYKIGISEFETQAYAAAIQTLTKAQQAGVSEQRLLFAKGSAKYFTKDYKGALVDLNKV 1276
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1223470867 1277 TEADYKTDEFYANRGSAKYLTKDYKGAIEDLSIAAKTKDKNGEVFFFLGNSHFQQKDYKATITNLEKAKEL 1347
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1157-1245 6.54e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 6.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1157 ALYEQQDYKNAVTDLELAKKMGKNSKALYAMLGDAAFELEEYEQALsALKQAQKLGATDKETTYKIGISEFETQAYAAAI 1236
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867 1237 QTLTKAQQA 1245
Cdd:COG3063     80 AYLERALEL 88
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1531-1626 6.80e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 6.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1531 ARYELKDYKGATEDLVKVTpADNINEKISFSNLGNAYFELKDYTAAnTALSKAVELGVSDVKVLGNRGESRYMLKDYEAA 1610
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKAL-ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                           90
                   ....*....|....*.
gi 1223470867 1611 ITDFNKVIAQEPKNAR 1626
Cdd:COG3063     79 LAYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1827-1927 7.39e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.83  E-value: 7.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1827 KDENVYFYRGTAYLNMKEYQVSAKDLNKAIEMGLNTGPVFANRGEARFALKDTTGSLADLTKATTLSPEDAQLFDRKGLI 1906
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                           90       100
                   ....*....|....*....|.
gi 1223470867 1907 LQMISRHKDAIEDFSKSVSLA 1927
Cdd:COG4235     95 AFQQGDYAEAIAAWQKLLALL 115
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 695-894 7.42e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 41.44  E-value: 7.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  695 FQTKDYAGAIAdLGEAEKAGATDKEVYLAKGLSLFELKNYAEAETELAKAIEAGEKSQKVFEHLADARFEQNKYKLAEAA 774
Cdd:PRK09782   520 YQVEDYATALA-AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND 598

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  775 YTQAIGAGLQTAHVFERRGKSRfEQKNYADANADLSKAIELGANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDV 854
Cdd:PRK09782   599 LTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1223470867  855 DLHTKLALSYCELKQYAAALPELTKAISL-----------GATEPRIYKQR 894
Cdd:PRK09782   678 ALIRQLAYVNQRLDDMAATQHYARLVIDDidnqalitpltPEQNQQRFNFR 728
TPR_11 pfam13414
TPR repeat;
1121-1162 7.86e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 36.30  E-value: 7.86e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1223470867 1121 GNELVAQKQYAKAIEDLNKAVTGGISDVTVHYNRGLALYEQQ 1162
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 356-443 8.02e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.93  E-value: 8.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  356 RANSRFRKEDYAGAIADYDKAVSLGVSEALIYNNRGKAKQLTSNAQGALEDYTQAIALDAAYLKAYENRGFLRYDQKDYA 435
Cdd:PLN03088     8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87


                   ....*...
gi 1223470867  436 GAIADLDK 443
Cdd:PLN03088    88 TAKAALEK 95
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1328-1415 8.18e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 8.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1328 HFQQKDYKATITNLEKAKELGRTDRDLFEHLGLAQYEEKDYTAAIEnLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALP 1407
Cdd:COG3063      2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                   ....*...
gi 1223470867 1408 NLNQAVTL 1415
Cdd:COG3063     81 YLERALEL 88
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 486-586 8.33e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 39.84  E-value: 8.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  486 YLAKglSLFELKNYAEAETELAKAIEAGEKS---QNVFEHLADARFEQNKYKSAEAAYTQAIGAGLQtAHVFERRGKSRY 562
Cdd:COG2976     95 LLAK--AAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALATLDAVKPEAFA-ALYAELRGDILL 171

                           90       100
                   ....*....|....*....|....
gi 1223470867  563 EQKNYTEAIADYSKAIELGTSNKE 586
Cdd:COG2976    172 AQGDKAEARAAYQKALAALPEDAP 195
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1361-1449 8.76e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 8.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1361 AQYEEKDYTAAIENLKAAKEKGSQSVRMYASLGNAQAEKEDFAAALpNLNQAVTLGSKDKLVFLNRGNARYNQKDYKNSI 1440
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                   ....*....
gi 1223470867 1441 TDYSQAITL 1449
Cdd:COG3063     80 AYLERALEL 88
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 794-882 8.96e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 8.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  794 KSRFEQKNYADANADLSKAIEL---GANEADVYYDRGMARYALKDYKGAAADFEKAKGLGSSDV---DLHTKLALSYCEL 867
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80

                           90
                   ....*....|....*
gi 1223470867  868 KQYAAALPELTKAIS 882
Cdd:COG1729     81 GDYDKARATLEELIK 95
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 760-845 9.22e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.05  E-value: 9.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867  760 DARFEQNKYKLAEAAYTQAIGA---GLQTAHVFERRGKSRFEQKNYADANADLSKAIELGANE---ADVYYDRGMARYAL 833
Cdd:COG1729      1 KALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                           90
                   ....*....|..
gi 1223470867  834 KDYKGAAADFEK 845
Cdd:COG1729     81 GDYDKARATLEE 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1469-1548 9.29e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 9.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1223470867 1469 DNVGALADFNKALSLDNKLPDAYANRGFIKWVQKDYkAAADDATKAIDLGAQDPLAYYVRGNARYELKDYKGATEDLVKV 1548
Cdd:COG3063      7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERA 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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