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Conserved domains on  [gi|122245643|sp|Q33C35|]
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RecName: Full=Photosystem I assembly protein Ycf3

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 9.42e-133

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.80  E-value: 9.42e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122245643 161 LKITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 9.42e-133

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.80  E-value: 9.42e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122245643 161 LKITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 2.52e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.53  E-value: 2.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 122245643 161 LKITRRFE 168
Cdd:COG5713  161 LKTTGRSK 168
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.61e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 122245643   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 1.16e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 122245643  110 NNMAVICHyRGEQAIQQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:TIGR00990 397 EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.43e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.43e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 122245643    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
M28_like cd05640
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
 96-158 2.28e-03

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349893 [Multi-domain]  Cd Length: 281  Bit Score: 37.43  E-value: 2.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  96 FRALERNPFLPQAFnnMAVICHYRGEQAIQQGDsEIAEAWFDQAAEYWKQAIALTPGNY-------IEAH 158
Cdd:cd05640    8 LVRMERNPHDPSAF--LAAAAEYIAQELVGSGY-NVTSHFFSHQEGVYANLIADLPGSYsqdklilIGAH 74
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 9.42e-133

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.80  E-value: 9.42e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033   1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:CHL00033  81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                 ....*...
gi 122245643 161 LKITRRFE 168
Cdd:CHL00033 161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 2.52e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.53  E-value: 2.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713    1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:COG5713   81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                 ....*...
gi 122245643 161 LKITRRFE 168
Cdd:COG5713  161 LKTTGRSK 168
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-166 2.54e-98

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 280.79  E-value: 2.54e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:PRK02603   1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNW 160
Cdd:PRK02603  81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160


                 ....*.
gi 122245643 161 LKITRR 166
Cdd:PRK02603 161 LKTTGR 166
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-161 7.57e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 7.57e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA--LELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 122245643 113 AVICHYRGEqaiqqgdseiaeawFDQAAEYWKQAIALTPgNYIEAHNWL 161
Cdd:COG0457   83 GLALQALGR--------------YEEALEDYDKALELDP-DDAEALYNL 116
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 34-161 1.05e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.63  E-value: 1.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  34 EAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRA--LALNP-DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 122245643 114 VICHYRGEqaiqqgdseiaeawFDQAAEYWKQAIALTPGNYIEAHNWL 161
Cdd:COG3914  188 NALQDLGR--------------LEEAIAAYRRALELDPDNADAHSNLL 221
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 45-161 1.54e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  45 AQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHyrgeqai 124
Cdd:COG3914   88 LQALGRYEEALALYRRA--LALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR------- 157

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 122245643 125 QQGDseiaeawFDQAAEYWKQAIALTPgNYIEAHNWL 161
Cdd:COG3914  158 RLGR-------LEEAIAALRRALELDP-DNAEALNNL 186
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
34-161 5.27e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 5.27e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  34 EAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG0457   41 DAEALYNLGLAYLRLGRYEEALADYEQA--LELDP-DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 122245643 114 VICHYRGEqaiqqgdseiaeawFDQAAEYWKQAIALTPgNYIEAHNWL 161
Cdd:COG0457  118 LALLELGR--------------YDEAIEAYERALELDP-DDADALYNL 150
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
21-142 2.75e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.54  E-value: 2.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  21 ILLRVIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALE 100
Cdd:COG4785   59 AAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA--LELDP-DLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 122245643 101 RNPFLPQAFNNMAVICHYRgeqaiqqGDSEIAEAWFDQAAEY 142
Cdd:COG4785  136 LDPDYAYAYLNRGIALYYL-------GRYELAIADLEKALEL 170
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 6.43e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.24  E-value: 6.43e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchyrge 121
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKA--LRLDP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA------ 94

                         90       100       110
                 ....*....|....*....|....*....|..
gi 122245643 122 qAIQQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG4235   95 -AFQQGD-------YAEAIAAWQKLLALLPAD 118
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-166 1.21e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.40  E-value: 1.21e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKA--LELDPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 122245643 115 ICHYRG--EQAIQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAHNWLKITRR 166
Cdd:COG0457  153 ALEKLGryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-141 1.87e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 1.87e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG5010   51 AKAFAIESPSDNLYNKLGDFEESLALLEQA--LQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                         90       100       110
                 ....*....|....*....|....*....|
gi 122245643 112 MAVIchyrgeqAIQQGDSEIAEAWFDQAAE 141
Cdd:COG5010  128 LAAL-------LLSLGQDDEAKAALQRALG 150
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 4.63e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 4.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  45 AQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYyFRALERNPFLPQAFNNMAVICHYRGEqai 124
Cdd:COG3063    2 YLKLGDLEEAEEYYEKA--LELDP-DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGD--- 74

                         90       100       110
                 ....*....|....*....|....*....|
gi 122245643 125 qqgdseiaeawFDQAAEYWKQAIALTPGNY 154
Cdd:COG3063   75 -----------YDEALAYLERALELDPSAL 93
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-164 1.71e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 51.84  E-value: 1.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPY----DRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG4785   30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 122245643 109 FNNMAVICHYRGEqaiqqgdseiaeawFDQAAEYWKQAIALTPgNYIEAHNWLKIT 164
Cdd:COG4785  110 YNNRGLAYLLLGD--------------YDAALEDFDRALELDP-DYAYAYLNRGIA 150
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-161 3.41e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 3.41e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 122245643 115 IchyrgeqAIQQGDseiaeawFDQAAEYWKQAIALTPgNYIEAHNWL 161
Cdd:COG4783   81 A-------LLKAGD-------YDEALALLEKALKLDP-EHPEAYLRL 112
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 32-153 6.29e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 6.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDRSyILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG2956   73 PDRAEALLELAQDYLKAGLLDRAEELLEKL--LELDPDDAE-ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE 149

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 122245643 112 MAvichyrgEQAIQQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG2956  150 LA-------ELYLEQGD-------YDEAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-153 2.23e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 2.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  42 GMSAQSEGNYAEALQNYYEAMRLeiDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGE 121
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                         90       100       110
                 ....*....|....*....|....*....|..
gi 122245643 122 qaiqqgdseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG4783  122 --------------PDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-141 4.76e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 4.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFN 110
Cdd:COG2956  140 GPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216

                         90       100       110
                 ....*....|....*....|....*....|.
gi 122245643 111 NMAVIchyrgeqAIQQGDSEIAEAWFDQAAE 141
Cdd:COG2956  217 RLAEL-------YEKLGDPEEALELLRKALE 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-162 8.55e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 8.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEA--LELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 122245643 115 IchyrgeqAIQQGDseiaeawFDQAAEYWKQAIALTPGN----------YIEAHNWLK 162
Cdd:COG2956   85 D-------YLKAGL-------LDRAEELLEKLLELDPDDaealrllaeiYEQEGDWEK 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-159 4.23e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 4.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  38 YYRDGMSAQSEGNYAEALQnYYEAMrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIch 117
Cdd:COG2956  113 LRLLAEIYEQEGDWEKAIE-VLERL-LKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL-- 187

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 122245643 118 yrgeqAIQQGDseiaeawFDQAAEYWKQAIALTPgNYIEAHN 159
Cdd:COG2956  188 -----YLEQGD-------YEEAIAALERALEQDP-DYLPALP 216
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 1.61e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 122245643   72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-159 4.25e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 4.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEqaiqqgdse 130
Cdd:COG5010   33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--------- 103

                         90       100
                 ....*....|....*....|....*....
gi 122245643 131 iaeawFDQAAEYWKQAIALTPGNYIEAHN 159
Cdd:COG5010  104 -----KDEAKEYYEKALALSPDNPNAYSN 127
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 5.65e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 5.65e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122245643  38 YYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG1729   33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 1.16e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.51  E-value: 1.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 122245643  110 NNMAVICHyRGEQAIQQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:TIGR00990 397 EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 33-153 1.20e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILyniGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL 335

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122245643  113 AVICHYRGE--QAIQQ------------------GDSEIAEAWFDQAAEYWKQAIALTPGN 153
Cdd:TIGR02917 336 ASIQLRLGRvdEAIATlspalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDPEN 396
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.36e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.47  E-value: 1.36e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122245643   42 GMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.43e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.43e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 122245643    74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_12 pfam13424
Tetratricopeptide repeat;
35-101 2.69e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 2.69e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 122245643   35 AFTYYRDGMSAQSEGNYAEALQNYYEAMRL---EIDPYDRSY--ILYNIGLIHTSNGEHTKALEYYFRALER 101
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrLLGPDHPLTatTLLNLGRLYLELGRYEEALELLERALAL 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-107 6.12e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.07  E-value: 6.12e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 122245643  33 KEAFTYYRDGMSAQSEGNYAEALQnYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKA--LKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-152 8.91e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 8.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  48 EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNP---FLPQAFNNMAVIchyrgeqAI 124
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLS-------YL 78

                         90       100
                 ....*....|....*....|....*...
gi 122245643 125 QQGDseiaeawFDQAAEYWKQAIALTPG 152
Cdd:COG1729   79 ELGD-------YDKARATLEELIKKYPD 99
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-148 1.01e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 38.36  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4785  107 AEAYNNRGLAYLLLGDYDAALEDFDRA--LELDP-DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 122245643 115 IchyRGEQAIQQGDSEIAEAWF---------DQAAEYWKQAIA 148
Cdd:COG4785  184 A---ERKLDPEKALALLLEDWAtayllqgdtEEARELFKLALA 223
M28_like cd05640
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
 96-158 2.28e-03

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349893 [Multi-domain]  Cd Length: 281  Bit Score: 37.43  E-value: 2.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  96 FRALERNPFLPQAFnnMAVICHYRGEQAIQQGDsEIAEAWFDQAAEYWKQAIALTPGNY-------IEAH 158
Cdd:cd05640    8 LVRMERNPHDPSAF--LAAAAEYIAQELVGSGY-NVTSHFFSHQEGVYANLIADLPGSYsqdklilIGAH 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-126 2.32e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.40  E-value: 2.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGE 121
Cdd:COG2956  185 AELYLEQGDYEEAIAALERA--LEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261


                 ....*
gi 122245643 122 QAIQQ 126
Cdd:COG2956  262 EAALA 266
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 3.44e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.67  E-value: 3.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   70 DRSYILYNIGLIHTSNGEHTKALEYYFRALER--------NPFLPQAFNNMAVICHyrgeqaiQQGDSEIAEAWFDQAAE 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL-------ELGRYEEALELLERALA 73


                  ....
gi 122245643  142 YWKQ 145
Cdd:pfam13424  74 LAEK 77
EST1_DNA_bind pfam10373
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...
 76-115 7.25e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.


Pssm-ID: 431239  Cd Length: 279  Bit Score: 35.85  E-value: 7.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 122245643   76 YN-IGLIHTSNGEHTKALEYYFRAL-ERNPFlPQAFNNMAVI 115
Cdd:pfam10373  19 YNqLGVIALYVGNHLDAVYYFLRSLlSRNPF-PTAKNNLELL 59
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-149 9.74e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 35.83  E-value: 9.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122245643   42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYRGE 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKA--LSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAGL 542

                          90       100
                  ....*....|....*....|....*...
gi 122245643  122 QAiQQGDSEIAEAWFDQAAEYWKQAIAL 149
Cdd:TIGR02917 543 YL-RTGNEEEAVAWLEKAAELNPQEIEP 569
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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