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Conserved domains on  [gi|122221768|sp|Q0IUL4|]
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RecName: Full=Phytosulfokines 2; Contains: RecName: Full=Phytosulfokine-alpha; Short=PSK-alpha; Short=Phytosulfokine-a; Contains: RecName: Full=Phytosulfokine-beta; Short=PSK-beta; Short=Phytosulfokine-b; Flags: Precursor

Protein Classification

PSK domain-containing protein( domain architecture ID 10533975)

PSK domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 43-118 3.26e-17

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


:

Pssm-ID: 399419  Cd Length: 89  Bit Score: 70.54  E-value: 3.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122221768   43 HQENGGVKAVAAVaadqlvlqlEGDTGNGDEVS---ELMGAAEEEAAAC-EEGKNNDECVQRRLLSDAHLDYIYTQHKNK 118
Cdd:pfam06404  19 HQGENEVKLNEIN---------EGATAEGEEGEdfsELMGLEEAEAAEAcEEGDDDEECLMRRTLVEAHLDYIYTQHHNH 89
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 43-118 3.26e-17

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 70.54  E-value: 3.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122221768   43 HQENGGVKAVAAVaadqlvlqlEGDTGNGDEVS---ELMGAAEEEAAAC-EEGKNNDECVQRRLLSDAHLDYIYTQHKNK 118
Cdd:pfam06404  19 HQGENEVKLNEIN---------EGATAEGEEGEdfsELMGLEEAEAAEAcEEGDDDEECLMRRTLVEAHLDYIYTQHHNH 89
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 43-118 3.26e-17

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 70.54  E-value: 3.26e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122221768   43 HQENGGVKAVAAVaadqlvlqlEGDTGNGDEVS---ELMGAAEEEAAAC-EEGKNNDECVQRRLLSDAHLDYIYTQHKNK 118
Cdd:pfam06404  19 HQGENEVKLNEIN---------EGATAEGEEGEdfsELMGLEEAEAAEAcEEGDDDEECLMRRTLVEAHLDYIYTQHHNH 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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