|
Name |
Accession |
Description |
Interval |
E-value |
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
1-877 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 1373.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 1 MLEPFFKNyfNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHF 80
Cdd:CHL00122 1 MFNNLFNN--KSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 81 DVQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPE 160
Cdd:CHL00122 79 DVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 161 ERKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLAR 240
Cdd:CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAK 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 241 VLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGR 320
Cdd:CHL00122 239 YLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR-NNEIIIVDEFTGR 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 321 TMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKD 400
Cdd:CHL00122 318 IMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKD 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 401 FPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARPENIESEAEIVSQAGCRGAI 480
Cdd:CHL00122 398 LPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSI 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 481 TISTNMAGRGTDIALGGNLESLLKVKLKKFISDLVSADFSTVLKSAQFDeFLVSFVPVFETFGLSKLNESSvredLLEYL 560
Cdd:CHL00122 478 TIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLN-ILNSLKNDLKFLSLSDFENLK----ILNEA 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 561 NEGIIPDRSDITDFITAYNSFLKERAAILLEEKTLITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDD 640
Cdd:CHL00122 553 SEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLED 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 641 KLLRLFGGDQILNLLQNIGLeDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESL 720
Cdd:CHL00122 633 NLLRIFGGDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSL 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 721 RDWIIEYGERSLYDITlAFSTNTNLALDKFFAL--KTQELLGMPYQVKWESAKGDINVLLNN-LKHQFQVSYTLKEAQLE 797
Cdd:CHL00122 712 RDWILAYGEQVIDDII-TFLKSRKNPNNKFINLinKFKELLKLPLCFNKSDLNTLNSGELKKfLYQQFWISYDLKELYLE 790
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 798 AIEPGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKIT 877
Cdd:CHL00122 791 QIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSIL 870
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
16-876 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1121.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 16 KYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQI 95
Cdd:COG0653 19 RLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGMRHFDVQLIGGIVLHQGKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 96 AEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTN 175
Cdd:COG0653 99 AEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMDPEERRAAYAADITYGTN 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 176 NELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDEKNQ 255
Cdd:COG0653 179 NEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINKLVPRLKRDGDYTVDEKAR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 256 VVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGRTMAGRRWSDGLHQA 334
Cdd:COG0653 259 TVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVK-DGEVVIVDEFTGRLMPGRRYSDGLHQA 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 335 IESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYLKWQ 414
Cdd:COG0653 338 IEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFN 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 415 AIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGTDIA 494
Cdd:COG0653 418 AVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQAGRPGAVTIATNMAGRGTDIV 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 495 LGGNLESLLKVKLKKfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnESSVREDLLEylnegiipdrsditdf 574
Cdd:COG0653 496 LGGNPEFLAAAELAD---------------------------------------RGLEWEEAIA---------------- 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 575 itaynsflKERAAIlLEEKTLITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQILNL 654
Cdd:COG0653 521 --------KIKAEW-QAEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGM 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 655 LQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEYGERSLYD 734
Cdd:COG0653 592 MDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIED 671
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 735 ITLAFSTNTNLA----LDKFF-ALKTQELLGMPYQvKWESAKG-DINVLLNNLKHQFQVSYTLKEAQleaIEPGIMRELE 808
Cdd:COG0653 672 LVDEYIPEGSYPeqwdLEGLEeALKELFGLDLPIE-EWLDEEGlDEEELRERLLEAADEAYEEKEEE---LGPEVMRELE 747
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 122220080 809 RSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKI 876
Cdd:COG0653 748 RVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQV 815
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
24-863 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1058.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 24 INNFGPMLSNLSDDEIRQRVQILKQQL-LSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEMKTGE 102
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLaKQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 103 GKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNELGFDY 182
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 183 LRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDEKNQVVKLTDE 262
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 263 GTLFCEQALKIADLYSPS-DPWISYVLNSIKAKELFIRNTHYIVnVEEEVIIVDEFTGRTMAGRRWSDGLHQAIESKENL 341
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLEnSPLIHYINNALKAKELFQKDVDYIV-RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 342 PIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYLKWQAIANECI 421
Cdd:TIGR00963 320 EIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 422 KMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGTDIalggnles 501
Cdd:TIGR00963 400 ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDI-------- 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 502 llkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsKLNEssvredlleylnegiipdrsditdfitaynsf 581
Cdd:TIGR00963 470 --------------------------------------------KLEE-------------------------------- 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 582 lkeraailleektlITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQILNLLQNIGLE 661
Cdd:TIGR00963 474 --------------VKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMD 539
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 662 DDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEYGERSLYDITLAFST 741
Cdd:TIGR00963 540 DDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSELILQMLESTLDRIVDAYIN 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 742 NTNLA----LDKfFALKTQELLGMPYQVKWESAKG-DINVLLNNLKHQFQVSYTLKEAQLEAIEpgiMRELERSFLLQQI 816
Cdd:TIGR00963 620 EEKLSeewdLEG-LIEKLKTLFLLDGDLTPEDLENlTSEDLKELLLEKIRAAYDEKEEQLESER---MREFERYVLLQSI 695
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 122220080 817 DFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRI 863
Cdd:TIGR00963 696 DRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
2-379 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 641.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 2 LEPFFKNYFNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARV 241
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 242 LQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGR 320
Cdd:pfam07517 241 LEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENvELLHHINQALKAHHLFKRDVDYIVR-DGEVVIVDEFTGR 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 122220080 321 TMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEF 379
Cdd:pfam07517 320 VMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
2-379 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 626.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 2 LEPFFKNYFNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSE-APTQKYLQTSQLAR 240
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEdESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 241 VLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSP-SDPWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTG 319
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVR-DGEVVIVDEFTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 320 RTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEF 379
Cdd:smart00957 320 RVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
38-392 |
1.28e-124 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 374.95 E-value: 1.28e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 38 EIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNAL 117
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 118 YGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQR 197
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 198 PLFYCVVDEVDSILIDEARTPLIISGpseaptqkylqtsqlarvlqknihyiideknqvvkltdegtlfceqalkiadly 277
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 278 spsdpwisyvlnsikakelfirnthyivnveeeviivdeftgrtmagrrwsdglhqaieskenlpiqdesqTLASITYQN 357
Cdd:cd17928 187 -----------------------------------------------------------------------TLATITFQN 195
|
330 340 350
....*....|....*....|....*....|....*
gi 122220080 358 LFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPT 392
Cdd:cd17928 196 YFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
1-877 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 1373.54 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 1 MLEPFFKNyfNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHF 80
Cdd:CHL00122 1 MFNNLFNN--KSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 81 DVQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPE 160
Cdd:CHL00122 79 DVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 161 ERKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLAR 240
Cdd:CHL00122 159 ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAK 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 241 VLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGR 320
Cdd:CHL00122 239 YLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR-NNEIIIVDEFTGR 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 321 TMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKD 400
Cdd:CHL00122 318 IMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKD 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 401 FPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARPENIESEAEIVSQAGCRGAI 480
Cdd:CHL00122 398 LPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSI 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 481 TISTNMAGRGTDIALGGNLESLLKVKLKKFISDLVSADFSTVLKSAQFDeFLVSFVPVFETFGLSKLNESSvredLLEYL 560
Cdd:CHL00122 478 TIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLN-ILNSLKNDLKFLSLSDFENLK----ILNEA 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 561 NEGIIPDRSDITDFITAYNSFLKERAAILLEEKTLITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDD 640
Cdd:CHL00122 553 SEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLED 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 641 KLLRLFGGDQILNLLQNIGLeDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESL 720
Cdd:CHL00122 633 NLLRIFGGDKIQNLMQTLNL-DDEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSL 711
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 721 RDWIIEYGERSLYDITlAFSTNTNLALDKFFAL--KTQELLGMPYQVKWESAKGDINVLLNN-LKHQFQVSYTLKEAQLE 797
Cdd:CHL00122 712 RDWILAYGEQVIDDII-TFLKSRKNPNNKFINLinKFKELLKLPLCFNKSDLNTLNSGELKKfLYQQFWISYDLKELYLE 790
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 798 AIEPGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKIT 877
Cdd:CHL00122 791 QIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSIL 870
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
16-876 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1121.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 16 KYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQI 95
Cdd:COG0653 19 RLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGMRHFDVQLIGGIVLHQGKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 96 AEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTN 175
Cdd:COG0653 99 AEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMDPEERRAAYAADITYGTN 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 176 NELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDEKNQ 255
Cdd:COG0653 179 NEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINKLVPRLKRDGDYTVDEKAR 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 256 VVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGRTMAGRRWSDGLHQA 334
Cdd:COG0653 259 TVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVK-DGEVVIVDEFTGRLMPGRRYSDGLHQA 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 335 IESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYLKWQ 414
Cdd:COG0653 338 IEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMIRKDEPDLVYKTEEEKFN 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 415 AIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGTDIA 494
Cdd:COG0653 418 AVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQAGRPGAVTIATNMAGRGTDIV 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 495 LGGNLESLLKVKLKKfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnESSVREDLLEylnegiipdrsditdf 574
Cdd:COG0653 496 LGGNPEFLAAAELAD---------------------------------------RGLEWEEAIA---------------- 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 575 itaynsflKERAAIlLEEKTLITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQILNL 654
Cdd:COG0653 521 --------KIKAEW-QAEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGM 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 655 LQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEYGERSLYD 734
Cdd:COG0653 592 MDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIED 671
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 735 ITLAFSTNTNLA----LDKFF-ALKTQELLGMPYQvKWESAKG-DINVLLNNLKHQFQVSYTLKEAQleaIEPGIMRELE 808
Cdd:COG0653 672 LVDEYIPEGSYPeqwdLEGLEeALKELFGLDLPIE-EWLDEEGlDEEELRERLLEAADEAYEEKEEE---LGPEVMRELE 747
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 122220080 809 RSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKI 876
Cdd:COG0653 748 RVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQV 815
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-876 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1113.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 1 MLEPFFKNYFNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHF 80
Cdd:PRK12904 4 LLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMRHF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 81 DVQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPE 160
Cdd:PRK12904 84 DVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 161 ERKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLAR 240
Cdd:PRK12904 164 ERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 241 VLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTG 319
Cdd:PRK12904 244 TLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENiALVHHLNQALRAHELFKRDVDYIVK-DGEVVIVDEFTG 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 320 RTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRK 399
Cdd:PRK12904 323 RLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRI 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 400 DFPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGA 479
Cdd:PRK12904 403 DHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 480 ITISTNMAGRGTDIALGGNLESLLKVKLKKfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredlley 559
Cdd:PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEE-------------------------------------------------- 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 560 lnegiipdrsditdfitAYNSFLKERAAILLEEKTLITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLD 639
Cdd:PRK12904 511 -----------------ETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 640 DKLLRLFGGDQILNLLQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKES 719
Cdd:PRK12904 574 DDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGED 653
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 720 LRDWIIEYGERSLYDITLAFSTNTNLA----LDKFF-ALKTQELLGMPYQvKWESAKGDINVLLNNLKHQFQVSYTLKEA 794
Cdd:PRK12904 654 LSETILDMREDVIEDLVDAYIPPGSYEedwdLEGLEeALKTDFGLELPIE-EWLEEGLDEEELRERILEAAEEAYEEKEE 732
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 795 QleaIEPGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRS 874
Cdd:PRK12904 733 E---LGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKV 809
|
..
gi 122220080 875 KI 876
Cdd:PRK12904 810 QI 811
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
24-863 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1058.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 24 INNFGPMLSNLSDDEIRQRVQILKQQL-LSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEMKTGE 102
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLaKQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 103 GKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNELGFDY 182
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 183 LRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDEKNQVVKLTDE 262
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 263 GTLFCEQALKIADLYSPS-DPWISYVLNSIKAKELFIRNTHYIVnVEEEVIIVDEFTGRTMAGRRWSDGLHQAIESKENL 341
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLEnSPLIHYINNALKAKELFQKDVDYIV-RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 342 PIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYLKWQAIANECI 421
Cdd:TIGR00963 320 EIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIK 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 422 KMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGTDIalggnles 501
Cdd:TIGR00963 400 ERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDI-------- 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 502 llkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsKLNEssvredlleylnegiipdrsditdfitaynsf 581
Cdd:TIGR00963 470 --------------------------------------------KLEE-------------------------------- 473
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 582 lkeraailleektlITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQILNLLQNIGLE 661
Cdd:TIGR00963 474 --------------VKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMD 539
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 662 DDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEYGERSLYDITLAFST 741
Cdd:TIGR00963 540 DDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSELILQMLESTLDRIVDAYIN 619
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 742 NTNLA----LDKfFALKTQELLGMPYQVKWESAKG-DINVLLNNLKHQFQVSYTLKEAQLEAIEpgiMRELERSFLLQQI 816
Cdd:TIGR00963 620 EEKLSeewdLEG-LIEKLKTLFLLDGDLTPEDLENlTSEDLKELLLEKIRAAYDEKEEQLESER---MREFERYVLLQSI 695
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 122220080 817 DFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRI 863
Cdd:TIGR00963 696 DRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
5-876 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 870.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 5 FFKNYF---NQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:PRK12906 4 ILKKWFdndKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRPFD 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:PRK12906 84 VQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARV 241
Cdd:PRK12906 164 KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKT 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 242 LQK-----------NIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISYVLNS-IKAKELFIRNTHYIVNvEE 309
Cdd:PRK12906 244 LIKdeaedgdddedTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQaLRANYIMLKDIDYVVQ-DG 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 310 EVIIVDEFTGRTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIP 389
Cdd:PRK12906 323 EVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVIT 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 390 IPTHRDVKRKDFPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAE 469
Cdd:PRK12906 403 IPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAK--NHAKEAE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 470 IVSQAGCRGAITISTNMAGRGTDIALGGNlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklne 549
Cdd:PRK12906 481 IIMNAGQRGAVTIATNMAGRGTDIKLGPG--------------------------------------------------- 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 550 ssvredlleylnegiipdrsditdfitaynsflkeraailleektlITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDP 629
Cdd:PRK12906 510 ----------------------------------------------VKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 630 GSSRFFLSLDDKLLRLFGGDQILNLLQNIGLEDD-APIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIY 708
Cdd:PRK12906 544 GSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMNDDdQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIY 623
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 709 SERKRVLE-----KESLRDWIIEYGERSLYDITLAFSTNTNL-ALDKFFalktQELLGMPYQVKWESAKG-DINVLLNNL 781
Cdd:PRK12906 624 KQRMQVINedkdlKEVLMPMIKRTVDRQVQMYTQGDKKDWDLdALRDFI----VSAMPDEETFDFEDLKGkSPEELKKRL 699
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 782 KHQFQVSYTLKEAQLEaiEPGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLN 861
Cdd:PRK12906 700 LDIVEDNYAEKEKQLG--DPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMIS 777
|
890
....*....|....*
gi 122220080 862 RIRHQVIYFIFRSKI 876
Cdd:PRK12906 778 NIDYDVTRLFMKAQI 792
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
14-879 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 766.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 14 LTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDG 93
Cdd:PRK09200 14 LKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQLIGALVLHEG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 94 QIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGL-IQEDMSPEERKQNYQCDVVY 172
Cdd:PRK09200 94 NIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLnFSDIDDASEKKAIYEADIIY 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 173 VTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHYIIDE 252
Cdd:PRK09200 174 TTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 253 KNQVVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVnVEEEVIIVDEFTGRTMAGRRWSDGL 331
Cdd:PRK09200 254 EKKEVWLTDQGIEKAESYFGIDNLYSLEHqVLYRHIILALRAHVLFKRDVDYIV-YDGEIVLVDRFTGRVLPGRKLQDGL 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 332 HQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYL 411
Cdd:PRK09200 333 HQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 412 KWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGT 491
Cdd:PRK09200 413 KYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAK--NAAKEAQIIAEAGQKGAVTVATNMAGRGT 490
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 492 DIALGgnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredlleylnEGiipdrsdi 571
Cdd:PRK09200 491 DIKLG-----------------------------------------------------------------EG-------- 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 572 tdfitaynsflkeraailleektlITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQI 651
Cdd:PRK09200 498 ------------------------VHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEEL 553
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 652 L---NLLQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKE--SLRDWIIE 726
Cdd:PRK09200 554 EklkKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVIL 633
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 727 YGERSLYDITLAFSTNTNLALDKFFALKTQELLGMPYQVKWESAKGDINVLLnnlkhqfQVSYTLKEAQLEAIEPGIM-R 805
Cdd:PRK09200 634 MIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEILSNTNFPDKKEVVQFLL-------EEAEKQLKEKRNKLPSATLyN 706
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 122220080 806 ELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKITID 879
Cdd:PRK09200 707 QFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFD 780
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
6-868 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 745.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 6 FKNYFNQS----LTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:TIGR04397 1 VKKLKGDSsareLKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARV 241
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 242 LQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWI-SYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGR 320
Cdd:TIGR04397 241 FEETEDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLyHYLIQALRAHVLFKRDVDYIVK-DGKIELVDMFTGR 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 321 TMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKD 400
Cdd:TIGR04397 320 IMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVD 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 401 FPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAI 480
Cdd:TIGR04397 400 WPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAK--TVEQEADLIALAGQKGQV 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 481 TISTNMAGRGTDIALGgnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredlleyl 560
Cdd:TIGR04397 478 TIATNMAGRGTDILLG---------------------------------------------------------------- 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 561 nEGIipdrsditdfitaynsflKEraailleektlitkLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDD 640
Cdd:TIGR04397 494 -EGV------------------HE--------------LGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLED 540
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 641 KLLRLFGGDQILNLLQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESL 720
Cdd:TIGR04397 541 DMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLRDKLLEEEDA 620
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 721 RDWIIEYGERSLYDITLAFSTNTNLALDKFFALKTQEL--LGMPYQVKWESAKGDINVLLNNLKHQFQvSYTLKEAQLEA 798
Cdd:TIGR04397 621 ISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEELnrIFPVTFVTFDKRIADKEELKDLVKDTYE-QYIAALEKLPE 699
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 799 IEPGIMRelERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVI 868
Cdd:TIGR04397 700 NEEIQMR--LKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQNIEREIC 767
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
5-876 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 709.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 5 FFKNYFNQS--LTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDV 82
Cdd:PRK12903 3 FLKLFFFKSteMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 83 QLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEER 162
Cdd:PRK12903 83 QIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 163 KQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVL 242
Cdd:PRK12903 163 REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 243 qKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISY-VLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGRT 321
Cdd:PRK12903 243 -KEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHrIQNALRAHKVMKEDVEYIVR-DGKIELVDQFTGRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 322 MAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDF 401
Cdd:PRK12903 321 MEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 402 PDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAIT 481
Cdd:PRK12903 401 PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAREAEIIAKAGQKGAIT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 482 ISTNMAGRGTDIALGgnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredlleyln 561
Cdd:PRK12903 479 IATNMAGRGTDIKLS----------------------------------------------------------------- 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 562 egiipdrsditdfitaynsflKEraailleektlITKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDK 641
Cdd:PRK12903 494 ---------------------KE-----------VLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 642 LLRLF-GGDQILNLLQNIGledDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESL 720
Cdd:PRK12903 542 LFRRFsNFDKIKEAFKKLG---DDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADDL 618
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 721 rDWIIEYGERSLYDITLA---FSTNTNL----ALDKFfaLKTQELLGMPYQVKWESAKG-DINVLLNNLKHQFQVSYTLK 792
Cdd:PRK12903 619 -SHVIEKMISRAVEQILKnsfIILKNNTinykELVEF--LNDNLLRITHFKFSEKDFENyHKEELAQYLIEALNEIYFKK 695
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 793 -EAQLEAIEPGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFI 871
Cdd:PRK12903 696 rQVILDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSL 775
|
....*
gi 122220080 872 FRSKI 876
Cdd:PRK12903 776 FNNPN 780
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
21-876 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 681.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 21 VDAINNFGPMLSNLSDDEIRQRVQILKQQL------LSNKNEA------------------------------------- 57
Cdd:PRK12901 24 VEKIKAEYPELEALSNDELRAKTDEFKQYIkeavadIDAKIEElkaeaiesldiderediyaqidklekeayeilekvld 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 58 DIICEVFAIVREATFR---------------------------------------------TLDIKHFDVQLIGGLVLND 92
Cdd:PRK12901 104 EILPEAFAIVKETARRfaeneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneiTWDMVHYDVQLIGGVVLHQ 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 93 GQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQE-DMSPEERKQNYQCDVV 171
Cdd:PRK12901 184 GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKhQPNSEARRKAYNADIT 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 172 YVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGP--------------------------- 224
Cdd:PRK12901 264 YGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPvpkgddqefeelkprverlveaqrkla 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 225 ----SEA---------------------------PTQKYLQTSQLARVLQKN------------------IHYIIDEKNQ 255
Cdd:PRK12901 344 tqflAEAkkliaegdkkegglallrayrglpknkALIKFLSEEGIKALLQKTenfymqdnnrempevdeeLYFVIDEKNN 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 256 VVKLTDEG-----------TLFC-----------------------EQALKIADLYSPSDPWISYVLNSIKAKELFIRNT 301
Cdd:PRK12901 424 SVELTDKGidyitgndedpDFFVlpdigtelaeieneggldeeeeaEKKEELFQDYSVKSERVHTLNQLLKAYTLFEKDD 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 302 HYIVnVEEEVIIVDEFTGRTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEK 381
Cdd:PRK12901 504 EYVV-MDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWD 582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 382 IYGLKVIPIPTHRDVKRKDFPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARP 461
Cdd:PRK12901 583 IYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKL 662
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 462 EniESEAEIVSQAGCRGAITISTNMAGRGTDIALGGnlesllKVKlkkfisdlvsadfstvlksaqfdeflvsfvpvfet 541
Cdd:PRK12901 663 H--QKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSP------EVK----------------------------------- 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 542 fglsklnessvredlleylnegiipdrsditdfitaynsflkeraailleektlitKLGGLHVIGTERHESRRIDNQLRG 621
Cdd:PRK12901 700 --------------------------------------------------------AAGGLAIIGTERHESRRVDRQLRG 723
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 622 RSGRQGDPGSSRFFLSLDDKLLRLFGGDQILNLLQNIGLEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALT 701
Cdd:PRK12901 724 RAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMN 803
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 702 MQRNGIYSERKRVLEKESLRDWIIEygerSLYDITLAFSTNTNLALD---------------------KFFALKTQELLG 760
Cdd:PRK12901 804 SQREVIYKRRRHALMGERLGMDIAN----MIYDVCEAIVENNKVANDykgfkfelirtlamespiteeEFNKLKKDELTD 879
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 761 MPYQV-------KWESAKGDINVLLNNL------------------KHQFQVSYTLKEAqLEAIEPGIMRELERSFLLQQ 815
Cdd:PRK12901 880 KLYDAalenyqrKMERIAEIAFPVIKQVyeeqgnmyerivvpftdgKRTLNVVTNLKEA-YETEGKEIVKDFEKNITLHI 958
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 122220080 816 IDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSKI 876
Cdd:PRK12901 959 IDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEI 1019
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
2-379 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 641.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 2 LEPFFKNYFNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARV 241
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 242 LQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTGR 320
Cdd:pfam07517 241 LEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENvELLHHINQALKAHHLFKRDVDYIVR-DGEVVIVDEFTGR 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 122220080 321 TMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEF 379
Cdd:pfam07517 320 VMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
22-700 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 628.19 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 22 DAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKN-EADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEMKT 100
Cdd:PRK12898 46 DRVLAAAEALAGLSEEALRARSLALRARLRARDGfRDALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGRLAEMQT 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 101 GEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNELGF 180
Cdd:PRK12898 126 GEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVF 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 181 DYLRDNMAFTQ-------------------EEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAP--TQKYLQTSQLA 239
Cdd:PRK12898 206 DYLRDRLALGQrasdarlaleslhgrssrsTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEAdeAEVYRQALELA 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 240 RVLQKNIHYIIDEKNQVVKLTDEGtlfCEQalkIADLYSPSDP-WIS------YVLNSIKAKELFIRNTHYIVNvEEEVI 312
Cdd:PRK12898 286 AQLKEGEDYTIDAAEKRIELTEAG---RAR---IAELAESLPPaWRGavrreeLVRQALSALHLFRRDEHYIVR-DGKVV 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 313 IVDEFTGRTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPT 392
Cdd:PRK12898 359 IVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPT 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 393 HRDVKRKDFPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVS 472
Cdd:PRK12898 439 NRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAK--QDAEEAAIVA 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 473 QAGCRGAITISTNMAGRGTDIALggnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnESSV 552
Cdd:PRK12898 517 RAGQRGRITVATNMAGRGTDIKL-----------------------------------------------------EPGV 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 553 REdlleylnegiipdrsditdfitaynsflkeraailleektlitkLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 632
Cdd:PRK12898 544 AA--------------------------------------------RGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 122220080 633 RFFLSLDDKLLRLFGGDQILNLLQNIGLEddapiqsPILTKSLES-----AQKKVEVYYFDSRKQLFEYDQAL 700
Cdd:PRK12898 580 EAILSLEDDLLQSFLGSRGLAIRRMELLG-------PRGGRALGAlllrrAQRRAERLHARARRALLHADEQL 645
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
2-379 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 626.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 2 LEPFFKNYFNQSLTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFD 81
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 82 VQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEE 161
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 162 RKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSE-APTQKYLQTSQLAR 240
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEdESSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 241 VLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSP-SDPWISYVLNSIKAKELFIRNTHYIVNvEEEVIIVDEFTG 319
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVR-DGEVVIVDEFTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 320 RTMAGRRWSDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEF 379
Cdd:smart00957 320 RVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
14-864 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 598.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 14 LTKYNSQVDAINNFGPMLSNLSDDEIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDG 93
Cdd:TIGR03714 6 LKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIVLHQG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 94 QIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGL-----IQEDMSPEERKQNYQC 168
Cdd:TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLgvvddPDEEYDANEKRKIYNS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 169 DVVYVTNNELGFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISGPSEAPTQKYLQTSQLARVLQKNIHY 248
Cdd:TIGR03714 166 DIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDY 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 249 IIDEKNQVVKLTDEGTLFCEQALKIADLYSPSDPWISYVLN-SIKAKELFIRNTHYIVnVEEEVIIVDEFTGRTMAGRRW 327
Cdd:TIGR03714 246 IFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINlALRAHYLFKRNKDYVV-TNGEVVLLDRITGRLLEGTKL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 328 SDGLHQAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYK 407
Cdd:TIGR03714 325 QSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYA 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 408 NQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNArpENIESEAEIVSQAGCRGAITISTNMA 487
Cdd:TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA--QNAAKEAQIIAEAGQKGAVTVATSMA 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 488 GRGTDIALGgnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklneSSVREdlleylnegiipd 567
Cdd:TIGR03714 483 GRGTDIKLG-----------------------------------------------------KGVAE------------- 496
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 568 rsditdfitaynsflkeraailleektlitkLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFG 647
Cdd:TIGR03714 497 -------------------------------LGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWS 545
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 648 GDQILNLLQNIGLEDDAPIQSPILT----KSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDW 723
Cdd:TIGR03714 546 PSWLKKYYKKYSVKDSKLKPSALFKrrfrKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDD 625
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 724 IIEYGERSLYDITLAFSTNTNLALDKFFALKTqellgMPYQVKWESAKGDINV---LLNNLKHQFQVSYTLKEAQLeaIE 800
Cdd:TIGR03714 626 DVDQIIDDVFNMYAEEQDLSNKSLLKRFILEN-----LSYQFKNDPDEFDLKNkeaIKDFLKEIADKELSEKKKVL--NN 698
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 122220080 801 PGIMRELERSFLLQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIR 864
Cdd:TIGR03714 699 DYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
19-863 |
3.22e-159 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 484.33 E-value: 3.22e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 19 SQVDAINNFGPMLSNLSDDEIRQRVQILKQQllsnkNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEM 98
Cdd:TIGR04221 22 AIVPAAASRMKELSALDDEELTKAARDLVLS-----GEAADAAQFLAILREAAERTLGMRPFDVQLLGALRLLAGDVIEM 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 99 KTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNEL 178
Cdd:TIGR04221 97 ATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYACDVTYASVNEI 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 179 GFDYLRDNMAFTQEEVVQRPLFYCVVDEVDSILIDEARTPLIISG--PSEAPTqkyLQTSQLARVLQKNIHYIIDEKNQV 256
Cdd:TIGR04221 177 GFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGnePGEAPR---GRITDLVRRLREDKHYTVDEDGRN 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 257 VKLTDEGTLFCEQALKIADLYSpsDPWISYVLNSIK----AKELFIRNTHYIVnVEEEVIIVDEFTGRTMAGRRWSDGLH 332
Cdd:TIGR04221 254 VHLTEDGARAVEAELGIDDLYS--EEHVGTTLVQVNvalhAHALLIRDVHYIV-RDGKVALIDASRGRVAQLQRWPDGLQ 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 333 QAIESKENLPIQDESQTLASITYQNLFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPTHRDVKRKDFPDLVYKNQYLK 412
Cdd:TIGR04221 331 AAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADRVYATAAEK 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 413 WQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARpeNIESEAEIVSQAGCRGAITISTNMAGRGTD 492
Cdd:TIGR04221 411 NDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAK--NDAEEAAIIAEAGDIGAVTVSTQMAGRGTD 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 493 IALGGnlesllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredlleylnegiipdrSDIT 572
Cdd:TIGR04221 489 IRLGG-----------------------------------------------------------------------SDEA 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 573 DfitaynsflKERAAilleektlitKLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLDDKLLRLFGGDQIL 652
Cdd:TIGR04221 498 D---------HDRVA----------ELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGAGETV 558
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 653 NLLQniglEDDAPIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEygersl 732
Cdd:TIGR04221 559 PAQP----AEDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERRETLLDTDTAWQELSE------ 628
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 733 yditlafstntnLALDKFFALKTQellgmpyqvkwesakgdinvllnnlkhqfqvsytLKEAQLEAIepgimrelERSFL 812
Cdd:TIGR04221 629 ------------RAADRAAELKKE----------------------------------VSEDALERA--------AREIM 654
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 122220080 813 LQQIDFSWKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRI 863
Cdd:TIGR04221 655 LYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRA 705
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
38-392 |
1.28e-124 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 374.95 E-value: 1.28e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 38 EIRQRVQILKQQLLSNKNEADIICEVFAIVREATFRTLDIKHFDVQLIGGLVLNDGQIAEMKTGEGKTIVALLPTFLNAL 117
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 118 YGKGVHVVTVNDYLARRDAETVGRVHRFLGLTVGLIQEDMSPEERKQNYQCDVVYVTNNELGFDYLRDNMAFTQEEVVQR 197
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 198 PLFYCVVDEVDSILIDEARTPLIISGpseaptqkylqtsqlarvlqknihyiideknqvvkltdegtlfceqalkiadly 277
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 278 spsdpwisyvlnsikakelfirnthyivnveeeviivdeftgrtmagrrwsdglhqaieskenlpiqdesqTLASITYQN 357
Cdd:cd17928 187 -----------------------------------------------------------------------TLATITFQN 195
|
330 340 350
....*....|....*....|....*....|....*
gi 122220080 358 LFLLYDKLSGMTGTAKTEELEFEKIYGLKVIPIPT 392
Cdd:cd17928 196 YFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
398-637 |
3.84e-67 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 219.73 E-value: 3.84e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 398 RKDFPDLVYKNQYLKWQAIANECIKMNEIDRPVLIGTTTIEKSELLAALLSEYNVPYRLLNARPEniESEAEIVSQAGCR 477
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNH--AREAEIIAEAGQK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 478 GAITISTNMAGRGTDIALGGNLESllkvklkkfisdlvsadfstvlksaqfdeflvsfvpvfetfglsklnessvredll 557
Cdd:cd18803 79 GAVTIATNMAGRGTDIKLGGNVEE-------------------------------------------------------- 102
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 558 eylnegiipdrsditdfitaynsflkeraailleektlitkLGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 637
Cdd:cd18803 103 -----------------------------------------LGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
665-875 |
2.31e-56 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 193.09 E-value: 2.31e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 665 PIQSPILTKSLESAQKKVEVYYFDSRKQLFEYDQALTMQRNGIYSERKRVLEKESLRDWIIEYGERSLYDITLAFSTNTN 744
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 745 LA----LDKFF-ALKTQELLGMPYQVKWESAKGDINVLLNNLKHQFQVSYTLKEAQleaIEPGIMRELERSFLLQQIDFS 819
Cdd:pfam07516 81 SPeewdLEGLKeALNEIFGLELPISEWEEEEDLDKEELKERLLEAAEEAYEEKEEE---IGPELMRELERVVLLQVIDSK 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 122220080 820 WKEHLQKISALRDSIRWRSYGQRDPLTDYKKESYSTFVTMLNRIRHQVIYFIFRSK 875
Cdd:pfam07516 158 WKEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
228-336 |
5.53e-43 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 151.41 E-value: 5.53e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 228 PTQKYLQTSQLARVLQKNIHYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPSD-PWISYVLNSIKAKELFIRNTHYIVN 306
Cdd:pfam01043 2 STELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENiELVHHINQALKAHHLFKRDVDYIVK 81
|
90 100 110
....*....|....*....|....*....|
gi 122220080 307 vEEEVIIVDEFTGRTMAGRRWSDGLHQAIE 336
Cdd:pfam01043 82 -DGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
224-336 |
3.33e-42 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 149.53 E-value: 3.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 224 PSEAPTQKYLQTSQLARVLQKNI-HYIIDEKNQVVKLTDEGTLFCEQALKIADLYSPS-DPWISYVLNSIKAKELFIRNT 301
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKDEeDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPEnIELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....*
gi 122220080 302 HYIVNvEEEVIIVDEFTGRTMAGRRWSDGLHQAIE 336
Cdd:smart00958 81 DYIVR-DGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
93-220 |
3.97e-17 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 78.98 E-value: 3.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122220080 93 GQIAEMKTGEGKTIVALLPTFLNAL-YGKGVHVVTVNDYLARRDAETVGRVhRFLGLTVGLIQEDMSPEERKQN--YQCD 169
Cdd:cd00046 3 NVLITAPTGSGKTLAALLAALLLLLkKGKKVLVLVPTKALALQTAERLREL-FGPGIRVAVLVGGSSAEEREKNklGDAD 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 122220080 170 VVYVTNNELGFDYLRDNMAFTqeevvqRPLFYCVVDEVDSILIDEARTPLI 220
Cdd:cd00046 82 IIIATPDMLLNLLLREDRLFL------KDLKLIIVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
93-147 |
1.56e-10 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 57.91 E-value: 1.56e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 122220080 93 GQIAEMKTGEGKTIVALLPTFLNALYGKGVHVVTVNDYLARRDAETVGRVHRFLG 147
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEILIVIDEIQ*ILD 55
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
599-635 |
2.76e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 48.31 E-value: 2.76e-07
10 20 30
....*....|....*....|....*....|....*..
gi 122220080 599 LGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 635
Cdd:cd09300 22 PELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| |
