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Conserved domains on  [gi|1220131342|gb|ASN78266|]
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CAD1, partial [Hyptia sp. 501]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12564 super family cl36145
carbamoyl-phosphate synthase small subunit;
7-40 2.58e-08

carbamoyl-phosphate synthase small subunit;


The actual alignment was detected with superfamily member PRK12564:

Pssm-ID: 237139 [Multi-domain]  Cd Length: 360  Bit Score: 48.92  E-value: 2.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIV 40
Cdd:PRK12564  100 EYLKENGIPGISGIDTRALTRKLREKGAMKGVIA 133
 
Name Accession Description Interval E-value
PRK12564 PRK12564
carbamoyl-phosphate synthase small subunit;
7-40 2.58e-08

carbamoyl-phosphate synthase small subunit;


Pssm-ID: 237139 [Multi-domain]  Cd Length: 360  Bit Score: 48.92  E-value: 2.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIV 40
Cdd:PRK12564  100 EYLKENGIPGISGIDTRALTRKLREKGAMKGVIA 133
CarA COG0505
Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide ...
 7-43 5.16e-08

Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase small subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440271 [Multi-domain]  Cd Length: 361  Bit Score: 47.71  E-value: 5.16e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIVCNE 43
Cdd:COG0505   100 EYLKEHGIPGISGIDTRALTRHLREKGAMKGVISTGD 136
 
Name Accession Description Interval E-value
PRK12564 PRK12564
carbamoyl-phosphate synthase small subunit;
7-40 2.58e-08

carbamoyl-phosphate synthase small subunit;


Pssm-ID: 237139 [Multi-domain]  Cd Length: 360  Bit Score: 48.92  E-value: 2.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIV 40
Cdd:PRK12564  100 EYLKENGIPGISGIDTRALTRKLREKGAMKGVIA 133
CarA COG0505
Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide ...
 7-43 5.16e-08

Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase small subunit is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 440271 [Multi-domain]  Cd Length: 361  Bit Score: 47.71  E-value: 5.16e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIVCNE 43
Cdd:COG0505   100 EYLKEHGIPGISGIDTRALTRHLREKGAMKGVISTGD 136
PRK12838 PRK12838
carbamoyl phosphate synthase small subunit; Reviewed
 7-43 8.31e-08

carbamoyl phosphate synthase small subunit; Reviewed


Pssm-ID: 183784 [Multi-domain]  Cd Length: 354  Bit Score: 47.19  E-value: 8.31e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1220131342   7 QWMKKENIPGI*EID*RA*TKII*EKGTILGRIVCNE 43
Cdd:PRK12838   98 DFLKEWNIPGISGVDTRALVKHIREKGTMKASITTTD 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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