NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1218187120|gb|ASM61692|]
View 

cytochrome b, partial (mitochondrion) [Pollenia rudis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 5.88e-145

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 408.40  E-value: 5.88e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 5.88e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 408.40  E-value: 5.88e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-212 1.51e-58

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 189.23  E-value: 1.51e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPMG----LNSNVDKIPFHPYFTY 75
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  76 KDIVGFIIMTMLLFLLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAIL 153
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187120 154 PFYHLSKFQGIQFYPINQFFFWMMVITVILLTWIGARPveEPYVLIGQILTIIYFSYFL 212
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 56-202 1.12e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 156.27  E-value: 1.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  56 NPMGLNSNVDKIPFHPYFTYKDIVGFIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187120 136 KLGGVIALVLSIAILAILPFYHLSKFQGiQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQI 202
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
107-207 1.51e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 141.85  E-value: 1.51e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFQGIQFYPINQFFFWMMVITVILLTW 186
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1218187120 187 IGARPVEEPYVLIGQILTIIY 207
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 91-198 2.47e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 2.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1218187120 170 NQFFFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 5.88e-145

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 408.40  E-value: 5.88e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-225 2.51e-126

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 361.92  E-value: 2.51e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00145  153 AIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00145  233 FVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00145  313 FRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 1-223 3.40e-119

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 343.94  E-value: 3.40e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00131  152 AVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00131  232 FAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSK 311

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDN 223
Cdd:MTH00131  312 QRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00119
cytochrome b; Provisional
 1-217 5.42e-119

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 343.42  E-value: 5.42e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00119  153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00119  233 LTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSK 312

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFS-YFLMNPMI 217
Cdd:MTH00119  313 QRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLL 370
CYTB MTH00191
cytochrome b; Provisional
 1-213 2.64e-118

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 341.12  E-value: 2.64e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00191  149 AIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILG 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00191  229 FFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSK 308

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLM 213
Cdd:MTH00191  309 QRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00016
cytochrome b; Validated
 1-225 1.31e-117

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 339.73  E-value: 1.31e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00016  153 AIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00016  233 FIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00016  313 FRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-225 3.34e-117

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 338.96  E-value: 3.34e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00074  153 AIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00074  233 FLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00074  313 QRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00100
cytochrome b; Provisional
 1-212 1.85e-114

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 331.99  E-value: 1.85e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00100  152 AIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00100  232 LLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSK 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFL 212
Cdd:MTH00100  312 QRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
CYTB MTH00034
cytochrome b; Validated
 1-212 3.09e-106

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 310.87  E-value: 3.09e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00034  152 AVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00034  232 FLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSN 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFL 212
Cdd:MTH00034  312 NQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00224
cytochrome b; Provisional
 1-225 5.56e-97

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 287.59  E-value: 5.56e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00224  153 AIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00224  233 YLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMN 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00224  313 KRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 1-225 3.84e-95

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 282.74  E-value: 3.84e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00022  151 AIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYG 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00022  231 IVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSW 310

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00022  311 LRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00053
cytochrome b; Provisional
 1-225 4.86e-94

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 280.05  E-value: 4.86e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00053  153 AIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00053  233 AVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSR 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00053  313 FRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00033
cytochrome b; Provisional
 1-225 7.27e-68

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 213.26  E-value: 7.27e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00033  149 AIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMtMLLFLLVLINPY---LLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYH 157
Cdd:MTH00033  229 FLIL-FGVFVIIGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187120 158 LSKFQGIQFYPINQFFFWMMVITVILLTWIGARPV-EEPYVLIGQILTIIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00033  308 RSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
CYTB MTH00086
cytochrome b; Provisional
 1-213 7.24e-65

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 204.40  E-value: 7.24e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIVG 80
Cdd:MTH00086  141 VIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 fIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYhlsK 160
Cdd:MTH00086  221 -IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---N 296

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187120 161 FQGIQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTIIYFSYFLM 213
Cdd:MTH00086  297 NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-212 1.51e-58

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 189.23  E-value: 1.51e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPMG----LNSNVDKIPFHPYFTY 75
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  76 KDIVGFIIMTMLLFLLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAIL 153
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187120 154 PFYHLSKFQGIQFYPINQFFFWMMVITVILLTWIGARPveEPYVLIGQILTIIYFSYFL 212
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 56-202 1.12e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 156.27  E-value: 1.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  56 NPMGLNSNVDKIPFHPYFTYKDIVGFIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187120 136 KLGGVIALVLSIAILAILPFYHLSKFQGiQFYPINQFFFWMMVITVILLTWIGARPVEEPYVLIGQI 202
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
107-207 1.51e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 141.85  E-value: 1.51e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFQGIQFYPINQFFFWMMVITVILLTW 186
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1218187120 187 IGARPVEEPYVLIGQILTIIY 207
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
CYTB MTH00046
cytochrome b; Validated
 2-206 1.57e-41

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 144.36  E-value: 1.57e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   2 IPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNV-DKIPFHPYFTYKDIVG 80
Cdd:MTH00046  144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFL 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGviaLVLsiaILAILPFYHLSK 160
Cdd:MTH00046  224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVL---VLSFLFFLWVPT 297

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1218187120 161 FQGIQFYPI-NQFFFWMMVITVILLTWIGARPVEEPYVLIGQILTII 206
Cdd:MTH00046  298 FNGSSVYSVwRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-102 1.32e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 92.69  E-value: 1.32e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHF-ILPFIVLATTMIHILFLHETGSNNPMGLNSNVDKIPFHPYFTYKDIV 79
Cdd:pfam13631  67 SIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146

                          90       100
                  ....*....|....*....|...
gi 1218187120  80 GFIIMTMLLFLLVLINPYLLGDP 102
Cdd:pfam13631 147 FFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-55 3.48e-16

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 73.94  E-value: 3.48e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSN 55
Cdd:cd00284   146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-53 1.32e-14

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 69.33  E-value: 1.32e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETG 53
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 91-189 6.72e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 58.47  E-value: 6.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:CHL00058   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|
gi 1218187120 170 NQFFFWMMVITVILLTwIGA 189
Cdd:CHL00058  129 ATTVFLIGTAVALWLG-IGA 147
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 91-198 1.01e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 58.27  E-value: 1.01e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPV 129

                          90       100
                  ....*....|....*....|....*....
gi 1218187120 170 NQFFFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:COG5679   130 ATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 91-198 2.47e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 54.42  E-value: 2.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187120  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1218187120 170 NQFFFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
petB CHL00070
cytochrome b6
 1-58 3.20e-05

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.56  E-value: 3.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPM 58
Cdd:CHL00070  157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-58 1.03e-03

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 38.92  E-value: 1.03e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187120   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPM 58
Cdd:PRK03735  165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH