|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-215 |
5.41e-146 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 411.10 E-value: 5.41e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00156 142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00156 222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNP 215
Cdd:MTH00156 302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-212 |
3.21e-58 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 188.46 E-value: 3.21e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPMG----LNSNIDKIPFHPYFTY 75
Cdd:COG1290 163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 76 KDIVGFIIMTMLLFLLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAIL 153
Cdd:COG1290 243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187118 154 PFYHLSKFQGIQFYPINQFLFWMMVITVILLTWIGARPveEPYVLIGQILTVIYFSYFL 212
Cdd:COG1290 321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
56-202 |
1.70e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 155.88 E-value: 1.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 56 NPMGLNSNIDKIPFHPYFTYKDIVGFIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187118 136 KLGGVIALVLSIAILAILPFYHLSKFQGiQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQI 202
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
107-207 |
2.69e-43 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 141.08 E-value: 2.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFQGIQFYPINQFLFWMMVITVILLTW 186
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 1218187118 187 IGARPVEEPYVLIGQILTVIY 207
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
91-198 |
1.29e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.19 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:TIGR01156 54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128
|
90 100
....*....|....*....|....*....
gi 1218187118 170 NQFLFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-215 |
5.41e-146 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 411.10 E-value: 5.41e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00156 142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00156 222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNP 215
Cdd:MTH00156 302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-225 |
1.01e-126 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 363.07 E-value: 1.01e-126
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00145 153 AIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00145 233 FVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGK 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00145 313 FRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-223 |
6.47e-120 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 345.87 E-value: 6.47e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00131 152 AVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLG 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00131 232 FAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSK 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDN 223
Cdd:MTH00131 312 QRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-217 |
6.89e-120 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 345.73 E-value: 6.89e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00119 153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00119 233 LTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSK 312
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFS-YFLMNPMI 217
Cdd:MTH00119 313 QRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTiLLILFPLL 370
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-213 |
1.34e-118 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 341.89 E-value: 1.34e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00191 149 AIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00191 229 FFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSK 308
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLM 213
Cdd:MTH00191 309 QRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-225 |
1.82e-118 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 342.04 E-value: 1.82e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00016 153 AIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00016 233 FIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQK 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00016 313 FRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-225 |
3.24e-117 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 338.96 E-value: 3.24e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00074 153 AIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00074 233 FLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSK 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00074 313 QRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-212 |
1.21e-114 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 332.37 E-value: 1.21e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00100 152 AIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILG 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00100 232 LLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSK 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFL 212
Cdd:MTH00100 312 QRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIIL 363
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-212 |
2.18e-106 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 311.25 E-value: 2.18e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00034 152 AVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVG 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00034 232 FLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSN 311
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFL 212
Cdd:MTH00034 312 NQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-225 |
4.29e-97 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 287.59 E-value: 4.29e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00224 153 AIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00224 233 YLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMN 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00224 313 KRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-225 |
1.37e-95 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 283.90 E-value: 1.37e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00022 151 AIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYG 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00022 231 IVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSW 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00022 311 LRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-225 |
2.92e-94 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 280.44 E-value: 2.92e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00053 153 AIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYG 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSK 160
Cdd:MTH00053 233 AVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSR 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00053 313 FRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-225 |
5.35e-67 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 210.95 E-value: 5.35e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00033 149 AIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMtMLLFLLVLINPY---LLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYH 157
Cdd:MTH00033 229 FLIL-FGVFVIIGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187118 158 LSKFQGIQFYPINQFLFWMMVITVILLTWIGARPV-EEPYVLIGQILTVIYFSYFLMNPMITKWWDNLL 225
Cdd:MTH00033 308 RSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-213 |
4.04e-65 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 205.17 E-value: 4.04e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIVG 80
Cdd:MTH00086 141 VIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 fIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYhlsK 160
Cdd:MTH00086 221 -IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---N 296
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1218187118 161 FQGIQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVIYFSYFLM 213
Cdd:MTH00086 297 NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-212 |
3.21e-58 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 188.46 E-value: 3.21e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPMG----LNSNIDKIPFHPYFTY 75
Cdd:COG1290 163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 76 KDIVGFIIMTMLLFLLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILAIL 153
Cdd:COG1290 243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187118 154 PFYHLSKFQGIQFYPINQFLFWMMVITVILLTWIGARPveEPYVLIGQILTVIYFSYFL 212
Cdd:COG1290 321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFL 377
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
56-202 |
1.70e-48 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 155.88 E-value: 1.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 56 NPMGLNSNIDKIPFHPYFTYKDIVGFIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187118 136 KLGGVIALVLSIAILAILPFYHLSKFQGiQFYPINQFLFWMMVITVILLTWIGARPVEEPYVLIGQI 202
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
107-207 |
2.69e-43 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 141.08 E-value: 2.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFYHLSKFQGIQFYPINQFLFWMMVITVILLTW 186
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 1218187118 187 IGARPVEEPYVLIGQILTVIY 207
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
2-206 |
7.01e-42 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 145.13 E-value: 7.01e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 2 IPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSNNPMGLNSNI-DKIPFHPYFTYKDIVG 80
Cdd:MTH00046 144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 81 FIIMTMLLFLLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGviaLVLsiaILAILPFYHLSK 160
Cdd:MTH00046 224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVL---VLSFLFFLWVPT 297
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1218187118 161 FQGIQFYPI-NQFLFWMMVITVILLTWIGARPVEEPYVLIGQILTVI 206
Cdd:MTH00046 298 FNGSSVYSVwRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-102 |
3.25e-23 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 91.53 E-value: 3.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHF-ILPFIVLATTMIHILFLHETGSNNPMGLNSNIDKIPFHPYFTYKDIV 79
Cdd:pfam13631 67 SIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146
|
90 100
....*....|....*....|...
gi 1218187118 80 GFIIMTMLLFLLVLINPYLLGDP 102
Cdd:pfam13631 147 FFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-55 |
3.01e-16 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 73.94 E-value: 3.01e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETGSN 55
Cdd:cd00284 146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-53 |
1.20e-14 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 69.33 E-value: 1.20e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLATTMIHILFLHETG 53
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
91-189 |
5.33e-11 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 58.86 E-value: 5.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:CHL00058 54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128
|
90 100
....*....|....*....|
gi 1218187118 170 NQFLFWMMVITVILLTwIGA 189
Cdd:CHL00058 129 ATTVFLIGTAVALWLG-IGA 147
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
91-198 |
6.24e-11 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 58.65 E-value: 6.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:COG5679 55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPV 129
|
90 100
....*....|....*....|....*....
gi 1218187118 170 NQFLFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:COG5679 130 ATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
91-198 |
1.29e-09 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 55.19 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187118 91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILAILPFY-HLSKFQGIQFYPI 169
Cdd:TIGR01156 54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128
|
90 100
....*....|....*....|....*....
gi 1218187118 170 NQFLFWMMVITVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-58 |
3.14e-05 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 43.56 E-value: 3.14e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPM 58
Cdd:CHL00070 157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-58 |
9.59e-04 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 38.92 E-value: 9.59e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187118 1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLATTMIHILFLHETGSNNPM 58
Cdd:PRK03735 165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
|