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Conserved domains on  [gi|1218187086|gb|ASM61675|]
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cytochrome b, partial (mitochondrion) [Goniophyto honshuensis]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 2.62e-136

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 386.44  E-value: 2.62e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 2.62e-136

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 386.44  E-value: 2.62e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.57e-50

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 168.82  E-value: 1.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHILFLHETGSNNPMG----LNSNMDKIPFHPYFTF 75
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  76 KDIVGFTIMTMSLILLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALIISIAILAIL 153
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086 154 PFYHLSKFRGIQFYPINQLFFWIMVMTVILLTWIGARPveEPYVLTGQILSLVYFSYFLV 213
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 56-202 7.15e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 146.64  E-value: 7.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  56 NPMGLNSNMDKIPFHPYFTFKDIVGFTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187086 136 KLGGVIALIISIAILAILPFYHLSKFRGiQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQI 202
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
107-207 9.93e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 119.12  E-value: 9.93e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSKFRGIQFYPINQLFFWIMVMTVILLTW 186
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1218187086 187 IGARPVEEPYVLTGQILSLVY 207
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 91-198 6.68e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 6.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFY-HLSKFRGIQFYPI 169
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1218187086 170 NQLFFWIMVMTVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-215 2.62e-136

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 386.44  E-value: 2.62e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00156  142 AIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVG 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00156  222 FIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSK 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNP 215
Cdd:MTH00156  302 FRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-225 8.30e-116

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 335.34  E-value: 8.30e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00145  153 AIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00145  233 FVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00145  313 FRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 1-223 9.52e-115

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 332.77  E-value: 9.52e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00131  152 AVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00131  232 FAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSK 311

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDN 223
Cdd:MTH00131  312 QRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00191
cytochrome b; Provisional
 1-213 1.84e-112

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 326.10  E-value: 1.84e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00191  149 AIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILG 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00191  229 FFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSK 308

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLV 213
Cdd:MTH00191  309 QRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00119
cytochrome b; Provisional
 1-217 4.13e-111

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 323.39  E-value: 4.13e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00119  153 AIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00119  233 LTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSK 312

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLV-NPLI 217
Cdd:MTH00119  313 QRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLL 370
CYTB MTH00016
cytochrome b; Validated
 1-225 4.45e-111

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 323.17  E-value: 4.45e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00016  153 AIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00016  233 FIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00016  313 FRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-225 6.36e-111

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 322.79  E-value: 6.36e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00074  153 AIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00074  233 FLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSK 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00074  313 QRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00100
cytochrome b; Provisional
 1-213 6.25e-108

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 315.42  E-value: 6.25e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00100  152 AIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00100  232 LLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSK 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLV 213
Cdd:MTH00100  312 QRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILI 364
CYTB MTH00034
cytochrome b; Validated
 1-217 2.42e-99

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 293.54  E-value: 2.42e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00034  152 AVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVG 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00034  232 FLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSN 311

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLV-NPLI 217
Cdd:MTH00034  312 NQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLI 369
CYTB MTH00224
cytochrome b; Provisional
 1-225 1.29e-92

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 276.42  E-value: 1.29e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00224  153 AIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00224  233 YLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMN 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00224  313 KRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00022
cytochrome b; Validated
 1-225 1.12e-90

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 271.19  E-value: 1.12e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00022  151 AIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYG 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00022  231 IVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSW 310

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00022  311 LRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00053
cytochrome b; Provisional
 1-225 2.20e-90

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 270.81  E-value: 2.20e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00053  153 AIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYG 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSK 160
Cdd:MTH00053  233 AVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSR 312

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00053  313 FRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKL 377
CYTB MTH00033
cytochrome b; Provisional
 1-225 1.25e-63

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 202.48  E-value: 1.25e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00033  149 AIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILG 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILlVLINPY---LLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYH 157
Cdd:MTH00033  229 FLILFGVFVI-IGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187086 158 LSKFRGIQFYPINQLFFWIMVMTVILLTWIGARPV-EEPYVLTGQILSLVYFSYFLVNPLIIKWWDNLL 225
Cdd:MTH00033  308 RSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLF 376
CYTB MTH00086
cytochrome b; Provisional
 1-213 5.55e-59

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 189.38  E-value: 5.55e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIVG 80
Cdd:MTH00086  141 VIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN 220

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FtIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYhlsK 160
Cdd:MTH00086  221 I-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---N 296

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187086 161 FRGIQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLVYFSYFLV 213
Cdd:MTH00086  297 NYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-213 1.57e-50

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 168.82  E-value: 1.57e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHILFLHETGSNNPMG----LNSNMDKIPFHPYFTF 75
Cdd:COG1290   163 AIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTV 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  76 KDIVGFTIMTMSLILLVLINPylLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIP--NKLGGVIALIISIAILAIL 153
Cdd:COG1290   243 KDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086 154 PFYHLSKFRGIQFYPINQLFFWIMVMTVILLTWIGARPveEPYVLTGQILSLVYFSYFLV 213
Cdd:COG1290   321 PFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 56-202 7.15e-45

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 146.64  E-value: 7.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  56 NPMGLNSNMDKIPFHPYFTFKDIVGFTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPN 135
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1218187086 136 KLGGVIALIISIAILAILPFYHLSKFRGiQFYPINQLFFWIMVMTVILLTWIGARPVEEPYVLTGQI 202
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
CYTB MTH00046
cytochrome b; Validated
 2-206 4.31e-39

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 137.81  E-value: 4.31e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   2 IPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSNNPMGLNSNM-DKIPFHPYFTFKDIVG 80
Cdd:MTH00046  144 VPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFL 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  81 FTIMTMSLILLVLINPYLLGDPDNFIPANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAilailpFYHLSK 160
Cdd:MTH00046  224 FMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLF------FLWVPT 297

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1218187086 161 FRGIQFYPI-NQLFFWIMVMTVILLTWIGARPVEEPYVLTGQILSLV 206
Cdd:MTH00046  298 FNGSSVYSVwRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
107-207 9.93e-35

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 119.12  E-value: 9.93e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086 107 PANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFYHLSKFRGIQFYPINQLFFWIMVMTVILLTW 186
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1218187086 187 IGARPVEEPYVLTGQILSLVY 207
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-102 4.61e-24

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 93.85  E-value: 4.61e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHF-ILPFIVLAMTMIHILFLHETGSNNPMGLNSNMDKIPFHPYFTFKDIV 79
Cdd:pfam13631  67 SIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLL 146

                          90       100
                  ....*....|....*....|...
gi 1218187086  80 GFTIMTMSLILLVLINPYLLGDP 102
Cdd:pfam13631 147 FFLITVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-55 3.01e-17

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 76.64  E-value: 3.01e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETGSN 55
Cdd:cd00284   146 AIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-53 2.42e-15

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 71.26  E-value: 2.42e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHILFLHETG 53
Cdd:pfam00033 137 AIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 89-198 6.62e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 53.26  E-value: 6.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  89 ILLVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFY-HLSKFRGIQFY 167
Cdd:COG5679    53 IGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRR 127

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1218187086 168 PINQLFFWIMVMTVILLTWIGARPVEEPYVL 198
Cdd:COG5679   128 PVATAVFLFGTLVTLWLGIGAALPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 88-189 2.48e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.54  E-value: 2.48e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  88 LILLVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFY-HLSKFRGIQF 166
Cdd:CHL00058   51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFR 125

                          90       100
                  ....*....|....*....|...
gi 1218187086 167 YPINQLFFWIMVMTVILLTwIGA 189
Cdd:CHL00058  126 RPVATTVFLIGTAVALWLG-IGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 91-198 6.68e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.18  E-value: 6.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1218187086  91 LVLINPYLLGDPdnfipANPLVTPIHIQPEWYFLFAYAILRSIPNKLGGVIALIISIAILAILPFY-HLSKFRGIQFYPI 169
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90       100
                  ....*....|....*....|....*....
gi 1218187086 170 NQLFFWIMVMTVILLTWIGARPVEEPYVL 198
Cdd:TIGR01156 129 ATTVFLFGTVVALWLGIGATLPIDKSLTL 157
petB CHL00070
cytochrome b6
 1-58 2.07e-05

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.94  E-value: 2.07e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHILFLHETGSNNPM 58
Cdd:CHL00070  157 AIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-58 2.46e-04

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 40.85  E-value: 2.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1218187086   1 AIPYLGIDLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHILFLHETGSNNPM 58
Cdd:PRK03735  165 AIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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