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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Pararchidendron pruinosum]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 909.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 1 M NA PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI V QYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI I QYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 81 ITVN G PEQLGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 161 GGVAADLP H GWIDKCLDFCDYFLT R V V EYQKLITRNPIFLERVEGVGI V GGEE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGI I GGEE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM V ESIKIIQQALEGIPGGPYENLE I R C FDREKD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREKD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1215848246 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 909.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 1 M NA PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI V QYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI I QYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 81 ITVN G PEQLGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 161 GGVAADLP H GWIDKCLDFCDYFLT R V V EYQKLITRNPIFLERVEGVGI V GGEE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGI I GGEE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM V ESIKIIQQALEGIPGGPYENLE I R C FDREKD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREKD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1215848246 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 588.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 7 RKDL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT IV Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 87 E Q L GN I Q VP K RA S YIR I I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 167 LP H G WID K CLD F C DYF LT R VV EY QK L I T R N P IF LE R VE GVG IVGG E EV I NW G LS GP M LRASG IQW DLRK VDH Y EC Y E E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 247 WE V QWQK EGD SLA RYLVR IG EM VE S IK II Q Q A L EGI P G GP YENLEIRCFDRE K DPEWNDF E YRFIS - K KPSPT F EL P KQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215848246 326 L Y VR VE A P K GELG IF L IG D QNGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
5.04e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 447.17
E-value: 5.04e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT IV QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 89 L GN I Q VP K RA SY IR IIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 169 HG W IDKCLD F CDY F LT R VVE Y QK L ITR N P I FLE R VE GVG I V GGEEVIN WGL S GPMLR A SGI Q WD L RK VDH YE C Y E E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG V V SAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 249 V QWQKE GD SLA RYL V R IG EM V ESIKII Q Q A LE GI P G GP Y -- E N LEIRCFDR E KDPEWN dfe YRF I S -- K KPSPT F EL P KQ 324
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215848246 325 E L YV RV E A PKGELG IFL I G D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.33e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 2.33e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGVA A DLP H G WID K CLD F C DYF LT R VV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGVA R DLP E G FLE K IRE F L DYF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 205 GVG IVGG E EVINW G LS GPMLRASG IQ WDLRK VDH Y EC Y E E F D WE V QWQK EGD SLA RYLVR IG EM VE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 285 GP Y -- ENLE I RCFDR E KDPE - WNDFEYR F is K KPSPT F EL P KQ E L YV R VEAPKGELG IF L IG D QNGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1215848246 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 909.46
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 1 M NA PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI V QYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TV PATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTI I QYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 81 ITVN G PEQLGNIQVPKRASYIR I IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIR V IMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 161 GGVAADLP H GWIDKCLDFCDYFLT R V V EYQKLITRNPIFLERVEGVGI V GGEE V INWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLP Y GWIDKCLDFCDYFLT G V A EYQKLITRNPIFLERVEGVGI I GGEE A INWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 241 CY E EFDWEVQWQKEGDSLARYLVRIGEM V ESIKIIQQALEGIPGGPYENLE I R C FDREKD P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CY D EFDWEVQWQKEGDSLARYLVRIGEM T ESIKIIQQALEGIPGGPYENLE A R R FDREKD S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1215848246 321 L P KQELYVRVEAPKGELGIFLIGD QNG FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L S KQELYVRVEAPKGELGIFLIGD DSV FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 730.38
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 1 M NAPA TR KDL M IV N M GPHHPSMHGVLRLIVTLDGEDV I DCEP IL GYLHRGMEKIAENRT I V Q Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GPHHPSMHGVLRLIVTLDGEDV V DCEP VI GYLHRGMEKIAENRT N V M Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 81 ITVN G PE Q L G NI Q VPKRASYIR I IMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H N F FR 159
Cdd:PRK07415 81 ITVN A PE K L A NI P VPKRASYIR V IMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N N Y FR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 160 IGGVAADLP H GW ID KCLDFCDYF LTRVV EY Q KLIT R NPIF LE R V EG V G IVGG EE V INWGLSGPMLRASG IQ WDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLP Y GW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G TISR EE A INWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 240 ECY EE FDW E V Q W QK EGD S LARY L VRI G EM V ES I KII Q QA LE GIPGGPYENLE IRCFDRE K DP EWN D F E Y RFIS KK PS PTF 319
Cdd:PRK07415 241 ECY DD FDW D V A W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AKRMAEG K KS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1215848246 320 EL P KQ ELYVR V E AP KGELGIF LI G DQNGF PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KI P NG ELYVR L E SG KGELGIF IQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 588.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 7 RKDL M IV NMGP H HPS M HGVLRL IVT LDGE D V I D CE P IL GYLHRG M EK I AENRT IV Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGP Q HPS T HGVLRL VLE LDGE T V V D AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 87 E Q L GN I Q VP K RA S YIR I I ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIR V I LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 167 LP H G WID K CLD F C DYF LT R VV EY QK L I T R N P IF LE R VE GVG IVGG E EV I NW G LS GP M LRASG IQW DLRK VDH Y EC Y E E F D 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PK R LD EY ED L L T G N R IF KA R TK GVG VLSA E DA I AL G VT GP V LRASG VDY DLRK DEP Y SG Y D E L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 247 WE V QWQK EGD SLA RYLVR IG EM VE S IK II Q Q A L EGI P G GP YENLEIRCFDRE K DPEWNDF E YRFIS - K KPSPT F EL P KQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215848246 326 L Y VR VE A P K GELG IF L IG D QNGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
6-393
3.23e-171
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 483.50
E-value: 3.23e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 6 TRKDLMIV N M GP H HP SM HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AE N RT IV Q YL PY VT R W DY LAT M FT E AITVNG 85
Cdd:PRK06075 2 AEIRNYTL N F GP Q HP AA HGVLRLI LE LDGE V V VRAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 86 P E Q L GN I Q VP K RA S YIR IIM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H NFF R I GGV AA 165
Cdd:PRK06075 82 V E K L LG I E VP E RA Q YIR VLF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H AYI R P GGV RR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 166 DLP H G WIDKCL DF C DYF LT R VVE Y QK L I T R N P I FLE R VE GVG I V GG E EVINW G LS GPMLRASG IQ WDLRK VDH YE C Y E E F 245
Cdd:PRK06075 162 DLP D G LLEDIR DF L DYF PK R LDD Y ET L L T D N R I WKQ R LV GVG V V SK E RALAL G FT GPMLRASG VA WDLRK SQP YE V Y D E L 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 246 D WE V QWQ K E GD SLA RYLVR IG EM VE S IK II Q Q A L E -- GI P G GP Y -- ENLE I RCFD R EKDPEWND f EYRFIS K KPSPT F EL 321
Cdd:PRK06075 242 D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPK I APPA R LEMKTSME - ALIHHF K LVTEG F RV 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215848246 322 P KQ E L Y VR VE A PKGE L G IF L IG D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 321 P AG E V Y AA VE S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
6-393
1.16e-158
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 450.70
E-value: 1.16e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 6 T R KDL M IV N M GP H HPS M HGV L RL IVTL DGE DVIDCE P IL GYLHRG M EK I AE NRTIV Q YL PY VT R W DYL AT M FTEAITVNG 85
Cdd:PRK12322 2 L R TEE M LL N V GP Q HPS T HGV F RL VLKI DGE IIVEAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 86 P E QLGNIQ VP K RA S Y I R I I ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH N FF RIGGV AA 165
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L R V I AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF N YM RIGGV KW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 166 D L P H GWI D K CLD F CD Y FLTRVVE Y QK L I T R N P IFL E RV E GVGI VGG EE V I NWG LSG PM LR AS G IQ WDLRK VDH Y EC Y EE F 245
Cdd:PRK12322 162 D A P D GWI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVGI YSA EE A I SYS LSG VN LR CT G VN WDLRK DEP Y SI Y DR F 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 246 D WEVQWQKE GD SLA RY LV R IG E MVE S I KII Q QA L E GI P - G GP yenleircfdrekdpewndfeyrf ISK K PSPTFEL PK Q 324
Cdd:PRK12322 242 D FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKA PK G 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215848246 325 E L YVR V E A P K GE L G IFLIG D QNGF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
5.04e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 447.17
E-value: 5.04e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D V IDCE P IL GYLHRG M EK I AENRT IV QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y V VRAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 89 L GN I Q VP K RA SY IR IIML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IR VMLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 169 HG W IDKCLD F CDY F LT R VVE Y QK L ITR N P I FLE R VE GVG I V GGEEVIN WGL S GPMLR A SGI Q WD L RK VDH YE C Y E E F D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PK R LRD Y ET L LNE N R I WKQ R TQ GVG V V SAKDALD WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 249 V QWQKE GD SLA RYL V R IG EM V ESIKII Q Q A LE GI P G GP Y -- E N LEIRCFDR E KDPEWN dfe YRF I S -- K KPSPT F EL P KQ 324
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK E RMLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215848246 325 E L YV RV E A PKGELG IFL I G D QNGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V YV PI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.33e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 2.33e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGVA A DLP H G WID K CLD F C DYF LT R VV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGVA R DLP E G FLE K IRE F L DYF PK R LD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 205 GVG IVGG E EVINW G LS GPMLRASG IQ WDLRK VDH Y EC Y E E F D WE V QWQK EGD SLA RYLVR IG EM VE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVG VLSA E DALAL G VT GPMLRASG VP WDLRK DEP Y SG Y D E L D FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 285 GP Y -- ENLE I RCFDR E KDPE - WNDFEYR F is K KPSPT F EL P KQ E L YV R VEAPKGELG IF L IG D QNGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V YV A VEAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 1215848246 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
2.71e-135
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 405.70
E-value: 2.71e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 8 KDLM I V N M GP H HP SM HG VL R LIVT LDGE DVI D CEPIL GY L HRG M EKI A E NRTIV Q YL PY VT R W DYLA TMFTEAIT VN GP E 87
Cdd:PRK13292 402 EETL I L N L GP Q HP GT HG II R FVLK LDGE EIV D MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 88 Q L GN I Q VP K RA S YIR IIML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNF FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIR VMLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 168 P H GW IDKCLD F CDY F LT R VV EY QK L I T R NPIF LE R VE GVG IVGGE E VIN WG L SGP M LRA S G IQ WDLRK VDH Y EC Y EE FD W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PG R LK EY ED L L T G NPIF KA R LK GVG VITRD E AVE WG I SGP N LRA C G LA WDLRK KMP Y GG Y DR FD F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 248 EV QWQKE GD SL ARYLVR IG EM VE S IK I IQ QA LE G I PGG PYENLEI R CFDRE K DPEWN D F E --- YR F ISKKPS P T fe L PK Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQ K RDTLK D I E sli HH F VNVTRG P A -- P PK G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215848246 325 E L Y VRV EAPKGE L G I F LIG D QNGFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
1.15e-122
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 366.55
E-value: 1.15e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 9 D L M IV N M GP H HPS M HG VL R LIVT LDGE DVI DC E P IL GY L HRG M EK IA E NRTIVQ Y L PY VT R W DYL ATMFT E AIT V NGP E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EIV DC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 89 L GN I Q VP K R ASY IR IIML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IR VMLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 169 H GW i D KC L - D F C D YFLT R VV EY Q K LIT RN P I FLE R VE GV GIVGGE E VIN WG LS G PM LRA S GI QW D L RK VDH Y EC YE E FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPK R LD EY E K AAL RN S I LKG R TQ GV AAYNAK E ALE WG VT G AG LRA T GI DF D V RK ARP Y SG YE N FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 248 EV QWQKE GD SLA R YL V RIG EM VE S IK II Q Q A L EGI P G GP YENLEIRCFDRE K DPEWNDF E --- YR F ISKKPS P T fe L P KQ 324
Cdd:PRK11742 429 EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKADHPLTTPPP K ERTLQHI E tli TH F LQVSWG P V -- M P AN 506
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215848246 325 E LYVRV EA P KG ELGIF L IG D QNGFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 507 E SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
1.90e-99
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 303.82
E-value: 1.90e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 8 KDLMIVNM GP H H PSMHGVLRLIVTLD GE DVI D C E PI LGY L HRG M EK I AE N R TIV Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 78 TE A I tvngp E QLGN I Q VP K RA S Y I R I I M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNF 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L R V I L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 158 FRI GGV AA DL PHGWIDKC L DFC D YFLTR V V E YQK L ITRN P IF L E R VE G V G IVGG E EVINW G LS GP ML RASG IQW D L R KVD 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T G VLSK E DARDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215848246 238 H Y EC Y E E F D WE V QWQK EGD SL AR Y LVR IG E MV ES IKI I Q QALE GI P G GP yenleircfdrekdpewndfeyrf I SKKPSP 317
Cdd:COG3261 350 P Y AA Y D E L D FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ------------------------ I RVPVPG 405
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215848246 318 TF el P KQ E LYV RVEAP K GEL GIFLIG D QN G FPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 406 LP -- P DG E GLG RVEAP R GEL VHYVRT D GD G RLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
