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Conserved domains on  [gi|1215843982|ref|YP_009397934|]
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cytochrome b6/f complex subunit 4 (chloroplast) [Sonderella linearis]

Protein Classification

cytochrome b6/f complex subunit IV( domain architecture ID 10000064)

cytochrome b6/f complex subunit IV is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-159 1.92e-107

cytochrome b6/f complex subunit IV


:

Pssm-ID: 176998  Cd Length: 160  Bit Score: 303.08  E-value: 1.92e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215843982  81 FFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGL 159
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-159 1.92e-107

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 303.08  E-value: 1.92e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215843982  81 FFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGL 159
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 2.31e-90

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 259.73  E-value: 2.31e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215843982  81 FFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-159 6.80e-84

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 243.55  E-value: 6.80e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   3 IIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWYFF 82
Cdd:COG5679     4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1215843982  83 PTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:COG5679    84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGL 160
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-148 2.07e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.18  E-value: 2.07e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  14 LRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWYFFPTFNLLRVIPN 93
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1215843982  94 KLIGVLSMASVPIGLIIIPFIESINKF-QNPFRRPVATIVFLIGTIITIWLGIGAT 148
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPV 136
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-160 5.37e-14

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 63.65  E-value: 5.37e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  65 QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESiNKFQNPFRRPVATIVFLIGTIITIWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79

                          90
                  ....*....|....*..
gi 1215843982 145 -IGATMPLSKAITLGII 160
Cdd:pfam00032  80 wLGKQPPTGPYTLLGQI 96
 
Name Accession Description Interval E-value
petD CHL00058
cytochrome b6/f complex subunit IV
 1-159 1.92e-107

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 303.08  E-value: 1.92e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWY 80
Cdd:CHL00058    1 MGVTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215843982  81 FFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:CHL00058   81 FFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGL 159
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 1-159 2.31e-90

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 259.73  E-value: 2.31e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWY 80
Cdd:TIGR01156   1 MSVTKKPDLSDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACVVGLAVLDPAMIGEPANPFATPLEILPEWY 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215843982  81 FFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:TIGR01156  81 FYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFRRPVATTVFLFGTVVALWLGIGATLPIDKSLTLGL 159
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 3-159 6.80e-84

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 243.55  E-value: 6.80e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982   3 IIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWYFF 82
Cdd:COG5679     4 LLKKPDLTDPKLRAKLEKGMGHNYYGEPAWPNDLLYIFPVVILGTIALCIGLAVLDPAMMGEPADPFATPLEILPEWYLY 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1215843982  83 PTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGTIITIWLGIGATMPLSKAITLGI 159
Cdd:COG5679    84 PVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFRRPVATAVFLFGTLVTLWLGIGAALPIDKSLTLGL 160
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 14-148 2.07e-46

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.18  E-value: 2.07e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  14 LRAKLAKGMGHHYYGEPAWPNDLLYMFPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWYFFPTFNLLRVIPN 93
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1215843982  94 KLIGVLSMASVPIGLIIIPFIESINKF-QNPFRRPVATIVFLIGTIITIWLGIGAT 148
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRsQFRPLRPTAFWVFLAGTLVLGWLGIQPV 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
28-150 1.05e-17

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 78.68  E-value: 1.05e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  28 GEPAWPNDLLYM--FPIVILATIACNIGLSILEPTSLGEQADPFATPLEILPEWYFFPTFNLLRVIP--NKLIGVLSMAS 103
Cdd:COG1290   233 GVPFHPYYTVKDgfGFFVFLGVFALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGL 312

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1215843982 104 VPIGLIIIPFIESiNKFQNPFRRPVATIVFLIGTIITIWLGIGATMP 150
Cdd:COG1290   313 AILVLFLLPFLDR-SPVRSPRYRPVRTALGVAFIVFFIVLTILGANP 358
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
65-160 5.37e-14

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 63.65  E-value: 5.37e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  65 QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESiNKFQNPFRRPVATIVFLIGTIITIWLG 144
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDR-SPVRSIRYRPLFKIFFWLFVVDFVVLG 79

                          90
                  ....*....|....*..
gi 1215843982 145 -IGATMPLSKAITLGII 160
Cdd:pfam00032  80 wLGKQPPTGPYTLLGQI 96
CYTB MTH00022
cytochrome b; Validated
 24-144 2.39e-12

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 63.18  E-value: 2.39e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  24 HHYYGEPAWpndllymFPIVILATIACNIglSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGV 98
Cdd:MTH00022  220 HVYYTSKDW-------YGIVVLFFLLSFI--VYFAPNLLGDpenfiQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1215843982  99 LSMASVPIGLIIIPFIESiNKFQNPFRRPVATIVF---LIGTIITIWLG 144
Cdd:MTH00022  291 VAMFFSILILFFLPLLHT-SWLRGLTFRPLGRMAFwflIVDFILLTWIG 338
CYTB MTH00191
cytochrome b; Provisional
 52-144 4.77e-12

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 62.24  E-value: 4.77e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  52 IGLSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFrR 126
Cdd:MTH00191  237 LFLVLFSPNLLGDpenfiPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTF-R 315

                          90       100
                  ....*....|....*....|.
gi 1215843982 127 PVATIVF---LIGTIITIWLG 144
Cdd:MTH00191  316 PLTQVVFwlwVANFILLTWLG 336
CYTB MTH00034
cytochrome b; Validated
 54-144 8.63e-12

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 61.65  E-value: 8.63e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  54 LSILEPTSLGEQ-----ADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFrRPV 128
Cdd:MTH00034  242 LALLFPTALNDPenfipANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTF-RPL 320

                          90
                  ....*....|....*....
gi 1215843982 129 ATIVF--LIGT-IITIWLG 144
Cdd:MTH00034  321 SQIAFwlLIATfFILTWIG 339
CYTB MTH00053
cytochrome b; Provisional
 24-144 1.70e-11

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 60.88  E-value: 1.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  24 HHYYGepawpndLLYMFPIVILATIACNIglSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGV 98
Cdd:MTH00053  222 HYYYV-------LKDLYGAVILLIILSII--VFLFPYSLGDaenfkQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 292

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1215843982  99 LSMASVPIGLIIIPFIEsINKFQNPFRRPVATIVF--LIGTIITI-WLG 144
Cdd:MTH00053  293 VALVFSILVLFFLPYLH-KSRFRGLSFRPLSKILFwfLVGDFFLLtWIG 340
CYTB MTH00145
cytochrome b; Provisional
 52-144 2.46e-11

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 60.30  E-value: 2.46e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  52 IGLSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIeSINKFQNPFRR 126
Cdd:MTH00145  241 VFLVLFFPNLLGDpenfiPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLL-HVGKFRSLSFY 319

                          90       100
                  ....*....|....*....|.
gi 1215843982 127 PVATIVF--LIGT-IITIWLG 144
Cdd:MTH00145  320 PLNQVLFwiFVGNfFILTWIG 340
CYTB MTH00016
cytochrome b; Validated
 53-143 3.00e-11

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 60.08  E-value: 3.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  53 GLSILEPTSLGEQ-----ADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIeSINKFQNPFRRP 127
Cdd:MTH00016  242 SVVLLWPNILGDPenfipANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFI-FKQKFRGLSFYP 320

                          90
                  ....*....|....*.
gi 1215843982 128 VATIVFLIGTIITIWL 143
Cdd:MTH00016  321 LNQILFWLLVSNFLLL 336
CYTB MTH00119
cytochrome b; Provisional
 36-144 1.70e-10

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 57.99  E-value: 1.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  36 LLYMFPIVILATIAcniglsILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLII 110
Cdd:MTH00119  231 LGLTLMLTLLLTLA------LFSPNLLGDpenftPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFL 304

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1215843982 111 IPFIESINKFQNPFrRPVATIVF--LIGTIITI-WLG 144
Cdd:MTH00119  305 MPFLHTSKQRSMTF-RPLSQLLFwtLVANLLILtWIG 340
CYTB MTH00074
cytochrome b; Provisional
 54-144 2.43e-10

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 57.38  E-value: 2.43e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  54 LSILEPTSLGEQ-----ADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFrRPV 128
Cdd:MTH00074  243 LSLFSPNLLGDPdnftpANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMF-RPL 321

                          90
                  ....*....|....*....
gi 1215843982 129 ATIVF---LIGTIITIWLG 144
Cdd:MTH00074  322 TQILFwllVANTLILTWIG 340
CYTB MTH00156
cytochrome b; Provisional
 52-144 5.94e-10

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 56.33  E-value: 5.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  52 IGLSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESiNKFQNPFRR 126
Cdd:MTH00156  230 ILLTLINPYLLGDpenfiPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNK-SKFRGNQFY 308

                          90       100
                  ....*....|....*....|.
gi 1215843982 127 PVATIVFLIGTIITI---WLG 144
Cdd:MTH00156  309 PINKILFWIFVNIVIlltWIG 329
CYTB MTH00131
cytochrome b; Provisional
 35-144 1.44e-09

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 55.43  E-value: 1.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  35 DLLyMFPIVILATIAcnigLSILEPTSLGEQ-----ADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLI 109
Cdd:MTH00131  228 DLL-GFAILLLALTS----LALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLM 302

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1215843982 110 IIPFIESINKFQNPFrRPVATIVF--LIG-TIITIWLG 144
Cdd:MTH00131  303 VVPILHTSKQRGLTF-RPLTQFLFwtLVAdVLILTWIG 339
CYTB MTH00100
cytochrome b; Provisional
 54-144 2.32e-09

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 54.64  E-value: 2.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  54 LSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESiNKFQNPFRRPV 128
Cdd:MTH00100  242 LVLFSPDLLGDpdnytPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHT-SKQRSMMFRPL 320

                          90
                  ....*....|....*....
gi 1215843982 129 ATIVF--LIGTIITI-WLG 144
Cdd:MTH00100  321 SQCLFwlLVADLLTLtWIG 339
CYTB MTH00086
cytochrome b; Provisional
 32-144 9.97e-09

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 53.02  E-value: 9.97e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  32 WPNDLLYMFPIVILatiacnIGLSILEPTSLGE-----QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPI 106
Cdd:MTH00086  214 WNKDAYNIIFWLVF------IIFSLFYPFNLGDpemfiEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIV 287

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1215843982 107 GLIIIPFIESINKFQNPFRRpVATIVFLIGTIITIWLG 144
Cdd:MTH00086  288 VFYFFIFVNNYTSCLNKLNK-FLVFSFIVVNVILSWLG 324
CYTB MTH00224
cytochrome b; Provisional
 66-144 2.81e-08

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 51.46  E-value: 2.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  66 ADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIESINKFQNPFRRPVATIVFLIGT--IITIWL 143
Cdd:MTH00224  260 ANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTswAILTWI 339


                  .
gi 1215843982 144 G 144
Cdd:MTH00224  340 G 340
CYTB MTH00033
cytochrome b; Provisional
 36-144 1.43e-07

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 49.55  E-value: 1.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215843982  36 LLYMFPIVILATIACNIGLSILEPTSLgEQADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPIGLIIIPFIE 115
Cdd:MTH00033  229 FLILFGVFVIIGIEPRIETLLQDPENF-IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILD 307

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1215843982 116 SiNKFQNPFRRPVATIV--FLIGT-IITIWLG 144
Cdd:MTH00033  308 R-SKIRSLTFNPTGKFFfwFIVGDfIILTWIG 338
CYTB MTH00046
cytochrome b; Validated
 65-103 1.99e-03

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 37.27  E-value: 1.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1215843982  65 QADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAS 103
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLS 288
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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