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Conserved domains on  [gi|1215786659|ref|YP_009391745|]
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Plastid-specifi c 30S ribosomal protein 3 (chloroplast) [Laurenciella marilzae]

Protein Classification

small ribosomal subunit protein cS23( domain architecture ID 10011832)

small ribosomal subunit protein cS23 is a plastid- and cyanobacterial-specific ribosomal protein that may mediate the effects of nuclear factors in translation

Gene Ontology:  GO:0003735|GO:0006412|GO:0005840
SCOP:  4005134

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02724 PRK02724
30S ribosomal protein PSRP-3;
1-99 4.46e-58

30S ribosomal protein PSRP-3;


:

Pssm-ID: 235062  Cd Length: 104  Bit Score: 173.77  E-value: 4.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215786659   1 MNKFTFRILWLDNNVAIAVDYIVGNNISPLTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQEKGQN 80
Cdd:PRK02724    6 EGRFILKVLWLDDNVALAVDQIVGKGTSPLTAYFFWPRNDAWEQLKTELESKHWITENERVEVLNKATEVINYWQEEGKG 85

                          90
                  ....*....|....*....
gi 1215786659  81 KSLIEAKEKFPEFIFAGTN 99
Cdd:PRK02724   86 KPLAEAQLKFPEVTFCGTA 104
 
Name Accession Description Interval E-value
PRK02724 PRK02724
30S ribosomal protein PSRP-3;
1-99 4.46e-58

30S ribosomal protein PSRP-3;


Pssm-ID: 235062  Cd Length: 104  Bit Score: 173.77  E-value: 4.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215786659   1 MNKFTFRILWLDNNVAIAVDYIVGNNISPLTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQEKGQN 80
Cdd:PRK02724    6 EGRFILKVLWLDDNVALAVDQIVGKGTSPLTAYFFWPRNDAWEQLKTELESKHWITENERVEVLNKATEVINYWQEEGKG 85

                          90
                  ....*....|....*....
gi 1215786659  81 KSLIEAKEKFPEFIFAGTN 99
Cdd:PRK02724   86 KPLAEAQLKFPEVTFCGTA 104
PSRP-3_Ycf65 pfam04839
Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); This small acidic protein is ...
 30-76 6.47e-26

Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA.


Pssm-ID: 398487  Cd Length: 47  Bit Score: 90.50  E-value: 6.47e-26
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1215786659 30 LTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQE 76
Cdd:pfam04839  1 LTPYFFWPRKDAWEELKAELESKPWISERDRIELLNQATEIINYWQE 47
 
Name Accession Description Interval E-value
PRK02724 PRK02724
30S ribosomal protein PSRP-3;
1-99 4.46e-58

30S ribosomal protein PSRP-3;


Pssm-ID: 235062  Cd Length: 104  Bit Score: 173.77  E-value: 4.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215786659   1 MNKFTFRILWLDNNVAIAVDYIVGNNISPLTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQEKGQN 80
Cdd:PRK02724    6 EGRFILKVLWLDDNVALAVDQIVGKGTSPLTAYFFWPRNDAWEQLKTELESKHWITENERVEVLNKATEVINYWQEEGKG 85

                          90
                  ....*....|....*....
gi 1215786659  81 KSLIEAKEKFPEFIFAGTN 99
Cdd:PRK02724   86 KPLAEAQLKFPEVTFCGTA 104
ycf65 CHL00163
putative ribosomal protein 3; Validated
 1-99 2.95e-50

putative ribosomal protein 3; Validated


Pssm-ID: 214381  Cd Length: 99  Bit Score: 153.67  E-value: 2.95e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215786659  1 MNKFTFRILWLDNNVAIAVDYIVGNNISPLTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQEKGQN 80
Cdd:CHL00163   1 MQKFTLKVLWLENNIGIAVDQIVGNGTSPLTSYFFWPRTDAWELLKLELESKPWISEDERIEILNKTTEIINYWQENKKK 80

                         90
                 ....*....|....*....
gi 1215786659 81 KSLIEAKEKFPEFIFAGTN 99
Cdd:CHL00163  81 YSLSEAQSKFPDFIFVGKF 99
PSRP-3_Ycf65 pfam04839
Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); This small acidic protein is ...
 30-76 6.47e-26

Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA.


Pssm-ID: 398487  Cd Length: 47  Bit Score: 90.50  E-value: 6.47e-26
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1215786659 30 LTSYFFWPRNDAWEQLKTELDSKPWISENEKVELLNKATEIINFWQE 76
Cdd:pfam04839  1 LTPYFFWPRKDAWEELKAELESKPWISERDRIELLNQATEIINYWQE 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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